Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Forward (+)

55814278 .. 55816124

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG374400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCGGCGGCAACTGCAGCAGCAGCAGCTTCAGGAGCTCCAAGCTCCTCCTCCGGTACTCTCCCTCTTCTGGGCCTGCAAACAACTTCATGGCCTCTTCAAAAGCTGCCATCCACATCCCACATTGCTTCTCTTCCACGCCGGCCAAAGGGTCTTTTCCCATCCGAGCTCTTGACCCTCGCAGACGACAAGAAGAAGAAGCAGAAGAGAATTCAGGCTTCGTTAACAACGCCACCGGTTTCAACTCTCGGTCGGAATAGTTTGGATAAGGAATTCAATATGAACGATTTGGAATATCTGGGGAAGGTGCTAGCTGGTTCCATTGTGGGTGGAGCTGTAATAAAGTATGGCAGCATAGTTTTTCCTGAGATAGCCAGACCCAACGTCATACTGGCTCTTATTATGATATTCACTCCTGTCATTCTAGCTACTTTACTTCTGATCAAGCAAAGTCGTGCAAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

16.3

Weight (kDa)

10.19

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 8
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	2 cut(s)	210, 272
AcuI	CTGAAG	1 cut(s)	15
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	3 cut(s)	70, 71, 148
AgeI	ACCGGT	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	101, 243, 277
AhdI	GACNNNNNGTC	1 cut(s)	383
AluBI	AGCT	8 cut(s)	29, 38, 45, 106, 169, 314, 335, 428
AluI	AGCT	8 cut(s)	29, 38, 45, 106, 169, 314, 335, 428
Alw21I	GWGCWC	2 cut(s)	40, 171
AoxI	GGCC	3 cut(s)	73, 92, 143
ApeKI	GCWGC	6 cut(s)	17, 20, 23, 26, 106, 351
ApoI	RAATTY	2 cut(s)	210, 272
AsiGI	ACCGGT	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	73
AsuNHI	GCTAGC	1 cut(s)	310
BanII	GRGCYC	2 cut(s)	40, 171
Bbv12I	GWGCWC	2 cut(s)	40, 171
BbvI	GCAGC	6 cut(s)	29, 32, 35, 38, 93, 363
BccI	CCATC	2 cut(s)	118, 169
BclI	TGATCA	1 cut(s)	441
BfaI	CTAG	2 cut(s)	311, 425
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 27, 107, 352
BlsI	GCNGC	8 cut(s)	7, 10, 19, 22, 25, 28, 108, 353
BmeRI	GACNNNNNGTC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	319
BmtI	GCTAGC	1 cut(s)	314
BsaWI	WCCGGW	2 cut(s)	53, 235
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 71, 148
Bse118I	RCCGGY	2 cut(s)	141, 235
Bse1I	ACTGG	1 cut(s)	396
Bse3DI	GCAATG	1 cut(s)	123
BseGI	GGATG	3 cut(s)	110, 116, 161
BseLI	CCNNNNNNNGG	3 cut(s)	70, 71, 148
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	2 cut(s)	37, 40
BseXI	GCAGC	6 cut(s)	29, 32, 35, 38, 93, 363
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	3 cut(s)	75, 94, 145
BshTI	ACCGGT	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	253
BsiHKAI	GWGCWC	2 cut(s)	40, 171
BsiSI	CCGG	3 cut(s)	54, 142, 236
BslI	CCNNNNNNNGG	3 cut(s)	70, 71, 148
BsnI	GGCC	3 cut(s)	75, 94, 145
Bsp1286I	GDGCHC	2 cut(s)	40, 171
Bsp143I	GATC	1 cut(s)	441
BspACI	CCGC	2 cut(s)	5, 8
BspANI	GGCC	3 cut(s)	75, 94, 145
BspCNI	CTCAG	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	319
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	123
BsrFI	RCCGGY	2 cut(s)	141, 235
BsrI	ACTGG	1 cut(s)	396
BssAI	RCCGGY	2 cut(s)	141, 235
BssMI	GATC	1 cut(s)	441
Bst6I	CTCTTC	4 cut(s)	72, 102, 138, 200
BstC8I	GCNNGC	3 cut(s)	77, 143, 312
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	3 cut(s)	110, 116, 161
BstKTI	GATC	1 cut(s)	444
BstMBI	GATC	1 cut(s)	441
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 26, 35
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	6 cut(s)	29, 32, 35, 38, 93, 363
BsuRI	GGCC	3 cut(s)	75, 94, 145
BtsCI	GGATG	3 cut(s)	110, 116, 161
Cac8I	GCNNGC	3 cut(s)	77, 143, 312
Cfr10I	RCCGGY	2 cut(s)	141, 235
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	57
CspAI	ACCGGT	1 cut(s)	235
CviAII	CATG	1 cut(s)	90
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
DriI	GACNNNNNGTC	1 cut(s)	383
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	4 cut(s)	72, 102, 138, 200
Eam1105I	GACNNNNNGTC	1 cut(s)	383
EarI	CTCTTC	4 cut(s)	72, 102, 138, 200
Ecl136II	GAGCTC	2 cut(s)	38, 169
Eco24I	GRGCYC	2 cut(s)	40, 171
Eco53kI	GAGCTC	2 cut(s)	38, 169
Eco57I	CTGAAG	1 cut(s)	15
EcoICRI	GAGCTC	2 cut(s)	38, 169
EcoRI	GAATTC	2 cut(s)	210, 272
EcoT38I	GRGCYC	2 cut(s)	40, 171
FaeI	CATG	1 cut(s)	93
FaiI	YATR	6 cut(s)	91, 281, 348, 356, 389, 404
FatI	CATG	1 cut(s)	89
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 27, 107, 352
FokI	GGATG	3 cut(s)	97, 103, 148
FriOI	GRGCYC	2 cut(s)	40, 171
Fsp4HI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 27, 107, 352
FspBI	CTAG	2 cut(s)	311, 425
GluI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 27, 107, 352
HaeIII	GGCC	3 cut(s)	75, 94, 145
HapII	CCGG	3 cut(s)	54, 142, 236
Hin1II	CATG	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HpaI	GTTAAC	1 cut(s)	225
HpaII	CCGG	3 cut(s)	54, 142, 236
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	3 cut(s)	166, 255, 441
Hpy188III	TCNNGA	3 cut(s)	33, 172, 365
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	17, 79, 458
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 26, 35
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	93
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	441
KspAI	GTTAAC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	441
LmnI	GCTCC	4 cut(s)	35, 43, 50, 332
Lsp1109I	GCAGC	6 cut(s)	29, 32, 35, 38, 93, 363
MaeI	CTAG	2 cut(s)	311, 425
MaeII	ACGT	1 cut(s)	384
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MboII	GAAGA	6 cut(s)	59, 89, 125, 205, 208, 217
MhlI	GDGCHC	2 cut(s)	40, 171
MluCI	AATT	2 cut(s)	210, 272
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	5 cut(s)	58, 61, 75, 105, 188
MroNI	GCCGGC	1 cut(s)	141
MseI	TTAA	1 cut(s)	224
MspI	CCGG	3 cut(s)	54, 142, 236
MwoI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 26, 35
NaeI	GCCGGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	441
NgoMIV	GCCGGC	1 cut(s)	141
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	1 cut(s)	93
NlaIV	GGNNCC	1 cut(s)	319
PdiI	GCCGGC	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	235
PkrI	GCNGC	8 cut(s)	7, 10, 19, 22, 25, 28, 108, 353
Psp124BI	GAGCTC	2 cut(s)	40, 171
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SacI	GAGCTC	2 cut(s)	40, 171
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 27, 107, 352
Sau3AI	GATC	1 cut(s)	441
Sau96I	GGNCC	1 cut(s)	73
SduI	GDGCHC	2 cut(s)	40, 171
SfcI	CTRYAG	1 cut(s)	15
Sse9I	AATT	2 cut(s)	210, 272
SsiI	CCGC	2 cut(s)	5, 8
SspMI	CTAG	2 cut(s)	311, 425
SstI	GAGCTC	2 cut(s)	40, 171
TaiI	ACGT	1 cut(s)	387
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	2 cut(s)	210, 272
TauI	GCSGC	2 cut(s)	8, 11
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TseI	GCWGC	6 cut(s)	17, 20, 23, 26, 106, 351
TspDTI	ATGAA	2 cut(s)	78, 296
XapI	RAATTY	2 cut(s)	210, 272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XspI	CTAG	2 cut(s)	311, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.