Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Reverse (-)

26055821 .. 26057911

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1213600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGTGGTGGCAACTGCCTCAGCTACGGTGACAGGAGCCTCCAGCCTCCGATACTCGTCCGGGTCTGATCAACGGCGGCTACGGCCCGCACAGAAGTTCACGAGTTACACGAAATTTGCCATCCACTACCCCAATTGCTTATCTTCCACAAGGGTAAAGGGGTATTTCCCTATCCGAGCTCTTGACCCTCAAAGAGGAGGTGAGGAAGAAGAAGTGAATTCAAACGTGGGTAACAATGGCAGCGGTTTGATCTCTGAGGACGATTTGGAATATCTGGGGAAGGTGGTAGCCGGTTCCCTTGTGGCTGCAGCGGTAATAAAGTACGGAAGCGTAGTTTTGCCTGAGATAACTAGACCCAATATCGTCCAGGCTCTTATCATGATATTCATGCCTATTGTTGTAGCTGTTTTGCTTTTGATCAAGCAAAGCCGTGCGGAGGGCCGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.02

Weight (kDa)

9.37

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	76, 87, 243, 311, 434
AcsI	RAATTY	2 cut(s)	113, 217
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	194, 436
AgsI	TTSAA	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	4 cut(s)	23, 179, 404, 447
AluI	AGCT	4 cut(s)	23, 179, 404, 447
Alw21I	GWGCWC	1 cut(s)	181
AoxI	GGCC	2 cut(s)	83, 439
ApeKI	GCWGC	3 cut(s)	240, 305, 308
ApoI	RAATTY	2 cut(s)	113, 217
AspS9I	GGNCC	2 cut(s)	84, 439
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	40, 212
BanII	GRGCYC	1 cut(s)	181
BauI	CACGAG	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	181
BbvCI	CCTCAGC	1 cut(s)	19
BbvI	GCAGC	3 cut(s)	252, 292, 320
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	3 cut(s)	89, 98, 414
BciT130I	CCWGG	1 cut(s)	368
BclI	TGATCA	2 cut(s)	67, 417
BcnI	CCSGG	1 cut(s)	61
BfaI	CTAG	2 cut(s)	351, 448
BfmI	CTRYAG	1 cut(s)	306
BisI	GCNGC	4 cut(s)	77, 241, 306, 309
BlsI	GCNGC	4 cut(s)	78, 242, 307, 310
Bme1390I	CCNGG	2 cut(s)	61, 368
BmgT120I	GGNCC	2 cut(s)	84, 439
BmiI	GGNNCC	2 cut(s)	37, 295
BmrFI	CCNGG	2 cut(s)	61, 368
BpmI	CTGGAG	1 cut(s)	25
Bpu10I	CCTNAGC	1 cut(s)	19
BpuMI	CCSGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 436
Bse118I	RCCGGY	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	194, 436
BseMII	CTCAG	3 cut(s)	33, 246, 333
BseRI	GAGGAG	1 cut(s)	210
BseXI	GCAGC	3 cut(s)	252, 292, 320
BshFI	GGCC	2 cut(s)	85, 441
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	60, 291
BslI	CCNNNNNNNGG	2 cut(s)	194, 436
BsnI	GGCC	2 cut(s)	85, 441
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	3 cut(s)	67, 249, 417
BspACI	CCGC	5 cut(s)	76, 87, 243, 311, 434
BspANI	GGCC	2 cut(s)	85, 441
BspCNI	CTCAG	3 cut(s)	32, 247, 334
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	37, 295
BspMAI	CTGCAG	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	290
BssMI	GATC	3 cut(s)	67, 249, 417
BssSI	CACGAG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	3 cut(s)	19, 255, 342
BstENI	CCTNNNNNAGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	120
BstKTI	GATC	3 cut(s)	70, 252, 420
BstMBI	GATC	3 cut(s)	67, 249, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	2 cut(s)	59, 366
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	3 cut(s)	252, 292, 320
BsuRI	GGCC	2 cut(s)	85, 441
BtsCI	GGATG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	378
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	84, 439
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	2 cut(s)	379, 388
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	3 cut(s)	19, 255, 342
DpnI	GATC	3 cut(s)	69, 251, 419
DpnII	GATC	3 cut(s)	67, 249, 417
Ecl136II	GAGCTC	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	2 cut(s)	382, 391
FaiI	YATR	2 cut(s)	380, 389
FatI	CATG	2 cut(s)	378, 387
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	2 cut(s)	67, 417
Fnu4HI	GCNGC	4 cut(s)	77, 241, 306, 309
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	4 cut(s)	77, 241, 306, 309
FspBI	CTAG	2 cut(s)	351, 448
GluI	GCNGC	4 cut(s)	77, 241, 306, 309
GsuI	CTGGAG	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	85, 441
HapII	CCGG	2 cut(s)	60, 291
Hin1II	CATG	2 cut(s)	382, 391
HpaII	CCGG	2 cut(s)	60, 291
HphI	GGTGA	2 cut(s)	40, 212
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	4 cut(s)	50, 67, 176, 256
Hpy188III	TCNNGA	3 cut(s)	100, 182, 379
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	3 cut(s)	19, 255, 342
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	382, 391
Ksp22I	TGATCA	2 cut(s)	67, 417
Kzo9I	GATC	3 cut(s)	67, 249, 417
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	8 cut(s)	18, 55, 73, 260, 304, 353, 354, 380
Lsp1109I	GCAGC	3 cut(s)	252, 292, 320
MaeI	CTAG	2 cut(s)	351, 448
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	3 cut(s)	28, 104, 230
MalI	GATC	3 cut(s)	69, 251, 419
MboI	GATC	3 cut(s)	67, 249, 417
MboII	GAAGA	3 cut(s)	135, 218, 221
MfeI	CAATTG	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	3 cut(s)	113, 133, 217
MnlI	CCTC	9 cut(s)	28, 49, 56, 188, 191, 196, 198, 250, 430
MspA1I	CMGCKG	2 cut(s)	243, 311
MspI	CCGG	2 cut(s)	60, 291
MspR9I	CCNGG	2 cut(s)	61, 368
MunI	CAATTG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	82
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	3 cut(s)	67, 249, 417
NlaIII	CATG	2 cut(s)	382, 391
NlaIV	GGNNCC	2 cut(s)	37, 295
NmuCI	GTSAC	1 cut(s)	28
PagI	TCATGA	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PkrI	GCNGC	4 cut(s)	78, 242, 307, 310
Psp124BI	GAGCTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	37, 295
PspPI	GGNCC	2 cut(s)	84, 439
PstI	CTGCAG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	181
SatI	GCNGC	4 cut(s)	77, 241, 306, 309
Sau3AI	GATC	3 cut(s)	67, 249, 417
Sau96I	GGNCC	2 cut(s)	84, 439
ScrFI	CCNGG	2 cut(s)	61, 368
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	7 cut(s)	25, 181, 202, 228, 285, 406, 449
SfcI	CTRYAG	1 cut(s)	306
Sse9I	AATT	3 cut(s)	113, 133, 217
SsiI	CCGC	5 cut(s)	76, 87, 243, 311, 434
SspMI	CTAG	2 cut(s)	351, 448
SstI	GAGCTC	1 cut(s)	181
StyD4I	CCNGG	2 cut(s)	59, 366
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	1 cut(s)	228
TasI	AATT	3 cut(s)	113, 133, 217
TauI	GCSGC	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	3 cut(s)	240, 305, 308
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	376
TspGWI	ACGGA	1 cut(s)	339
XagI	CCTNNNNNAGG	1 cut(s)	192
XapI	RAATTY	2 cut(s)	113, 217
XspI	CTAG	2 cut(s)	351, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.