Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Reverse (-)

57280616 .. 57282114

Gene Structure 1499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG394100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCGGCGGCAACTGCAGCAGCAGCTTCAGGAGCCCCCAAGTTCCTCCTCCGGTGCAGGCAGTCCTCCTCTTCCGGGCCTGCAAACAACTTCATGGCCTCTTCAAAAGCTGCCATCCACATCCCAGATTGCTTTTCTTCCACAGGGGCCAGAGTGTCTTCTCCCATCCGAGCTCTTGACCCTCGCAGACGACAAGAAGAAGAAGAAGCAGAAGATAATTCAAGCATCGTTAACAACGCCACCGGTTTCAACTCTCAGAAGGATTTGGAATATCTGGGGAAGGTGCTAGCTGGTTCCGTTGTGGGTGGAGCTGTAATAAAGTATGGCAGCATAGTTTTTCCTGAGATAACCAGACCCAACATCATACTGGCTCTTATTATGATATTCACTCCTGTCATTCTAGCTACTTTACTTCTGATCAAGCAAAGTCGTGCAAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.48

Weight (kDa)

9.39

Isoelectric Point (pI)

63.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 8
AcuI	CTGAAG	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgeI	ACCGGT	1 cut(s)	242
AgsI	TTSAA	3 cut(s)	105, 222, 250
AluBI	AGCT	6 cut(s)	26, 110, 173, 290, 311, 404
AluI	AGCT	6 cut(s)	26, 110, 173, 290, 311, 404
Alw21I	GWGCWC	1 cut(s)	175
AoxI	GGCC	3 cut(s)	77, 96, 147
ApeKI	GCWGC	5 cut(s)	17, 20, 23, 110, 327
AsiGI	ACCGGT	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	77, 147
AsuC2I	CCSGG	1 cut(s)	76
AsuNHI	GCTAGC	1 cut(s)	286
BanII	GRGCYC	2 cut(s)	37, 175
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	5 cut(s)	29, 32, 35, 97, 339
BccI	CCATC	2 cut(s)	122, 173
BclI	TGATCA	1 cut(s)	417
BcnI	CCSGG	1 cut(s)	76
BfaI	CTAG	2 cut(s)	287, 401
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 111, 328
BlsI	GCNGC	7 cut(s)	7, 10, 19, 22, 25, 112, 329
Bme1390I	CCNGG	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	77, 147
BmiI	GGNNCC	3 cut(s)	34, 148, 295
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	234
BmtI	GCTAGC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	76
BsaWI	WCCGGW	2 cut(s)	51, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	372
BseGI	GGATG	3 cut(s)	114, 120, 165
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	269, 333
BseNI	ACTGG	1 cut(s)	372
BseRI	GAGGAG	2 cut(s)	38, 58
BseXI	GCAGC	5 cut(s)	29, 32, 35, 97, 339
BsgI	GTGCAG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	79, 98, 149
BshTI	ACCGGT	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	3 cut(s)	52, 75, 243
BslI	CCNNNNNNNGG	1 cut(s)	75
BsnI	GGCC	3 cut(s)	79, 98, 149
Bsp1286I	GDGCHC	2 cut(s)	37, 175
Bsp143I	GATC	1 cut(s)	417
BspACI	CCGC	2 cut(s)	5, 8
BspANI	GGCC	3 cut(s)	79, 98, 149
BspCNI	CTCAG	2 cut(s)	268, 334
BspLI	GGNNCC	3 cut(s)	34, 148, 295
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	242
BssMI	GATC	1 cut(s)	417
Bst6I	CTCTTC	2 cut(s)	76, 106
BstC8I	GCNNGC	3 cut(s)	59, 81, 288
BstDEI	CTNAG	2 cut(s)	255, 342
BstF5I	GGATG	3 cut(s)	114, 120, 165
BstKTI	GATC	1 cut(s)	420
BstMBI	GATC	1 cut(s)	417
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	5 cut(s)	29, 32, 35, 97, 339
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	79, 98, 149
BtsCI	GGATG	3 cut(s)	114, 120, 165
Cac8I	GCNNGC	3 cut(s)	59, 81, 288
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	77, 147
CspAI	ACCGGT	1 cut(s)	242
CviAII	CATG	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	255, 342
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
Eam1104I	CTCTTC	2 cut(s)	76, 106
EarI	CTCTTC	2 cut(s)	76, 106
Ecl136II	GAGCTC	1 cut(s)	173
Eco24I	GRGCYC	2 cut(s)	37, 175
Eco53kI	GAGCTC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	173
EcoT38I	GRGCYC	2 cut(s)	37, 175
FaeI	CATG	1 cut(s)	97
FaiI	YATR	5 cut(s)	95, 324, 332, 365, 380
FatI	CATG	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	417
Fnu4HI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 111, 328
FokI	GGATG	3 cut(s)	101, 107, 152
FriOI	GRGCYC	2 cut(s)	37, 175
Fsp4HI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 111, 328
FspBI	CTAG	2 cut(s)	287, 401
GluI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 111, 328
HaeIII	GGCC	3 cut(s)	79, 98, 149
HapII	CCGG	3 cut(s)	52, 75, 243
Hin1II	CATG	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HpaI	GTTAAC	1 cut(s)	232
HpaII	CCGG	3 cut(s)	52, 75, 243
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	170, 258, 417
Hpy188III	TCNNGA	3 cut(s)	30, 176, 341
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	253, 274
HpyCH4V	TGCA	4 cut(s)	17, 57, 83, 434
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
HpyF3I	CTNAG	2 cut(s)	255, 342
Hsp92II	CATG	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	417
KspAI	GTTAAC	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	417
LmnI	GCTCC	2 cut(s)	32, 308
Lsp1109I	GCAGC	5 cut(s)	29, 32, 35, 97, 339
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	287, 401
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MboII	GAAGA	8 cut(s)	63, 93, 129, 150, 209, 212, 215, 224
MhlI	GDGCHC	2 cut(s)	37, 175
MluCI	AATT	1 cut(s)	217
MnlI	CCTC	6 cut(s)	56, 59, 76, 79, 109, 192
MseI	TTAA	1 cut(s)	231
MspI	CCGG	3 cut(s)	52, 75, 243
MspR9I	CCNGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	1 cut(s)	417
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	3 cut(s)	34, 148, 295
PinAI	ACCGGT	1 cut(s)	242
PkrI	GCNGC	7 cut(s)	7, 10, 19, 22, 25, 112, 329
Psp124BI	GAGCTC	1 cut(s)	175
PspN4I	GGNNCC	3 cut(s)	34, 148, 295
PspPI	GGNCC	2 cut(s)	77, 147
PstI	CTGCAG	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 111, 328
Sau3AI	GATC	1 cut(s)	417
Sau96I	GGNCC	2 cut(s)	77, 147
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	2 cut(s)	37, 175
SetI	ASST	7 cut(s)	28, 112, 175, 285, 292, 313, 406
SfaNI	GCATC	1 cut(s)	234
SfcI	CTRYAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	2 cut(s)	5, 8
SspMI	CTAG	2 cut(s)	287, 401
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	74
TasI	AATT	1 cut(s)	217
TauI	GCSGC	2 cut(s)	8, 11
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseI	GCWGC	5 cut(s)	17, 20, 23, 110, 327
TspDTI	ATGAA	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XspI	CTAG	2 cut(s)	287, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.