Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Reverse (-)

51803294 .. 51805147

Gene Structure 1854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019419

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGGCGGCAACTGCAGCAGCAGCTTCAGGAGCCCCCAAGTTCCTCCTCCGTTGCAGGCAGTCCTCCTCTTCCGGGCCTGCAAACAACTTCATGGCCTCTTCAAAAGCTGCCATCCACATCCCACATTGCTTCTCTTCCACAAGGGCCAAAGGGTCTTCTCCCATCCGAGCTCTTGACCCTCGCAGACGACAAGAAGAAGAAGCAGAAGAGAATTCAAGCATAGTTAACAACACCACTGGTTTCAACTCTCACAAGGATTTGGAATATCTGGGGAAGGTGCTAGCTGGTTCCATTGTGGGTGGAGCTGTAATAAAGTATGGCAGCATAGTTTTTCCTGAGATAACCAGACCCAACATCATACTGGCTCTTATTATGATATTCACTCCTGTCATTCTAGCTACTTTACTTCTGATCAAGCAAAGTCGTGCAAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.47

Weight (kDa)

9.93

Isoelectric Point (pI)

62.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 8
AcsI	RAATTY	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	105, 219, 247
AluBI	AGCT	6 cut(s)	26, 110, 173, 287, 308, 401
AluI	AGCT	6 cut(s)	26, 110, 173, 287, 308, 401
Alw21I	GWGCWC	1 cut(s)	175
AoxI	GGCC	3 cut(s)	77, 96, 147
ApeKI	GCWGC	5 cut(s)	17, 20, 23, 110, 324
ApoI	RAATTY	1 cut(s)	214
AspS9I	GGNCC	2 cut(s)	77, 147
AsuC2I	CCSGG	1 cut(s)	76
AsuNHI	GCTAGC	1 cut(s)	283
BanII	GRGCYC	2 cut(s)	37, 175
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	5 cut(s)	29, 32, 35, 97, 336
BccI	CCATC	2 cut(s)	122, 173
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	76
BfaI	CTAG	2 cut(s)	284, 398
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 111, 325
BlsI	GCNGC	7 cut(s)	7, 10, 19, 22, 25, 112, 326
Bme1390I	CCNGG	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	77, 147
BmiI	GGNNCC	2 cut(s)	34, 292
BmrFI	CCNGG	1 cut(s)	76
BmtI	GCTAGC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	2 cut(s)	244, 369
Bse3DI	GCAATG	1 cut(s)	127
BseGI	GGATG	3 cut(s)	114, 120, 165
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	244, 369
BseRI	GAGGAG	2 cut(s)	38, 58
BseXI	GCAGC	5 cut(s)	29, 32, 35, 97, 336
BshFI	GGCC	3 cut(s)	79, 98, 149
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	75
BsnI	GGCC	3 cut(s)	79, 98, 149
Bsp1286I	GDGCHC	2 cut(s)	37, 175
Bsp143I	GATC	1 cut(s)	414
BspACI	CCGC	2 cut(s)	5, 8
BspANI	GGCC	3 cut(s)	79, 98, 149
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	34, 292
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	244, 369
BssMI	GATC	1 cut(s)	414
Bst6I	CTCTTC	4 cut(s)	76, 106, 142, 204
BstC8I	GCNNGC	3 cut(s)	59, 81, 285
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	114, 120, 165
BstKTI	GATC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	5 cut(s)	29, 32, 35, 97, 336
BstV2I	GAAGAC	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	79, 98, 149
BtsCI	GGATG	3 cut(s)	114, 120, 165
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	3 cut(s)	59, 81, 285
Cfr13I	GGNCC	2 cut(s)	77, 147
CviAII	CATG	1 cut(s)	94
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
Eam1104I	CTCTTC	4 cut(s)	76, 106, 142, 204
EarI	CTCTTC	4 cut(s)	76, 106, 142, 204
Ecl136II	GAGCTC	1 cut(s)	173
Eco24I	GRGCYC	2 cut(s)	37, 175
Eco53kI	GAGCTC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	214
EcoT38I	GRGCYC	2 cut(s)	37, 175
FaeI	CATG	1 cut(s)	97
FaiI	YATR	6 cut(s)	95, 224, 321, 329, 362, 377
FatI	CATG	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 111, 325
FokI	GGATG	3 cut(s)	101, 107, 152
FriOI	GRGCYC	2 cut(s)	37, 175
Fsp4HI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 111, 325
FspBI	CTAG	2 cut(s)	284, 398
GluI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 111, 325
HaeIII	GGCC	3 cut(s)	79, 98, 149
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HpaI	GTTAAC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	170, 414
Hpy188III	TCNNGA	3 cut(s)	30, 176, 338
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	271
HpyCH4V	TGCA	4 cut(s)	17, 57, 83, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
HpyF3I	CTNAG	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	414
KspAI	GTTAAC	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	2 cut(s)	32, 305
Lsp1109I	GCAGC	5 cut(s)	29, 32, 35, 97, 336
MaeI	CTAG	2 cut(s)	284, 398
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MboII	GAAGA	7 cut(s)	63, 93, 129, 150, 209, 212, 221
MhlI	GDGCHC	2 cut(s)	37, 175
MluCI	AATT	1 cut(s)	214
MnlI	CCTC	6 cut(s)	56, 59, 76, 79, 109, 192
MseI	TTAA	1 cut(s)	228
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	1 cut(s)	414
NheI	GCTAGC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	2 cut(s)	34, 292
PkrI	GCNGC	7 cut(s)	7, 10, 19, 22, 25, 112, 326
Psp124BI	GAGCTC	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	34, 292
PspPI	GGNCC	2 cut(s)	77, 147
PstI	CTGCAG	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 111, 325
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	2 cut(s)	77, 147
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	2 cut(s)	37, 175
SetI	ASST	7 cut(s)	28, 112, 175, 282, 289, 310, 403
SfcI	CTRYAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	2 cut(s)	5, 8
SspMI	CTAG	2 cut(s)	284, 398
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	74
TasI	AATT	1 cut(s)	214
TauI	GCSGC	2 cut(s)	8, 11
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	5 cut(s)	17, 20, 23, 110, 324
TspDTI	ATGAA	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XspI	CTAG	2 cut(s)	284, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.