Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Reverse (-)

33689269 .. 33691258

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACAGGAAGGCAATTGGCGTCAACTGCGGCGGCAACTGCAACAGCAGCTTCTGGAGCCCCCAAGCTCCTCCTCCGGTGCAGCCACTCCTCCTCTTCCGGGCCTGCCATCCACATCCCAGATTGCTTCTCTTCCACGAGGGCCAAAGGGTCTTTCCCCATCGGAGCTCTTGACCCTCGCAGACGACAAGAAGAAGAAATAGAAGAGAATTCAAGCATCGTTAACAACACCACCGGTTTCAACTTTCAGAACGATTTGGAATATCTGGTGAAGGTGCTAGCTGGTTCTATTGTGGGTGGAGCTGTAATAAAGTACGGCAGCATAGTTCTTCCTGCGATAACCAGACCCAACATCATACCGGCTCTTATTATGATATTCACTCCTGTACTTCTGGCTACTTTACTACTGATCAAGCAAAGTCGTGCAAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.15

Weight (kDa)

9.44

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	29, 32
AcsI	RAATTY	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	2 cut(s)	314, 387
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgeI	ACCGGT	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	213, 241
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	5 cut(s)	50, 67, 167, 281, 302
AluI	AGCT	5 cut(s)	50, 67, 167, 281, 302
Alw21I	GWGCWC	1 cut(s)	169
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	101, 141
ApeKI	GCWGC	3 cut(s)	47, 81, 318
ApoI	RAATTY	1 cut(s)	208
AsiGI	ACCGGT	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	101, 141
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	280
AsuNHI	GCTAGC	1 cut(s)	277
BanII	GRGCYC	2 cut(s)	61, 169
BauI	CACGAG	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	3 cut(s)	59, 93, 330
BccI	CCATC	2 cut(s)	116, 167
BceAI	ACGGC	1 cut(s)	331
BclI	TGATCA	1 cut(s)	408
BcnI	CCSGG	1 cut(s)	100
BfaI	CTAG	1 cut(s)	278
BisI	GCNGC	5 cut(s)	30, 33, 48, 82, 319
BlsI	GCNGC	5 cut(s)	31, 34, 49, 83, 320
Bme1390I	CCNGG	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	101, 141
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	225
BmtI	GCTAGC	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	100
BsaHI	GRCGYC	1 cut(s)	20
BsaWI	WCCGGW	2 cut(s)	75, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse118I	RCCGGY	2 cut(s)	233, 358
BseGI	GGATG	2 cut(s)	108, 114
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseRI	GAGGAG	4 cut(s)	59, 62, 79, 82
BseXI	GCAGC	3 cut(s)	59, 93, 330
BsgI	GTGCAG	1 cut(s)	100
BshFI	GGCC	2 cut(s)	103, 143
BshTI	ACCGGT	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	4 cut(s)	76, 99, 234, 359
BslI	CCNNNNNNNGG	1 cut(s)	99
BsnI	GGCC	2 cut(s)	103, 143
Bsp1286I	GDGCHC	2 cut(s)	61, 169
Bsp143I	GATC	1 cut(s)	408
BspACI	CCGC	2 cut(s)	29, 32
BspANI	GGCC	2 cut(s)	103, 143
BspLI	GGNNCC	1 cut(s)	58
BspOI	GCTAGC	1 cut(s)	281
BsrFI	RCCGGY	2 cut(s)	233, 358
BssAI	RCCGGY	2 cut(s)	233, 358
BssMI	GATC	1 cut(s)	408
BssNI	GRCGYC	1 cut(s)	20
BssSI	CACGAG	1 cut(s)	136
Bst2BI	CACGAG	1 cut(s)	136
Bst6I	CTCTTC	3 cut(s)	100, 136, 198
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	105, 279
BstF5I	GGATG	2 cut(s)	108, 114
BstKTI	GATC	1 cut(s)	411
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 38, 47, 56
BstSCI	CCNGG	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	59, 93, 330
BsuRI	GGCC	2 cut(s)	103, 143
BtsCI	GGATG	2 cut(s)	108, 114
Cac8I	GCNNGC	2 cut(s)	105, 279
CaiI	CAGNNNCTG	1 cut(s)	53
Cfr10I	RCCGGY	2 cut(s)	233, 358
Cfr13I	GGNCC	2 cut(s)	101, 141
CseI	GACGC	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	313, 386
CspAI	ACCGGT	1 cut(s)	233
CviQI	GTAC	2 cut(s)	313, 386
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
Eam1104I	CTCTTC	3 cut(s)	100, 136, 198
EarI	CTCTTC	3 cut(s)	100, 136, 198
Ecl136II	GAGCTC	1 cut(s)	167
Eco24I	GRGCYC	2 cut(s)	61, 169
Eco53kI	GAGCTC	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	208
EcoT38I	GRGCYC	2 cut(s)	61, 169
FaiI	YATR	3 cut(s)	323, 356, 371
FbaI	TGATCA	1 cut(s)	408
Fnu4HI	GCNGC	5 cut(s)	30, 33, 48, 82, 319
FokI	GGATG	2 cut(s)	95, 101
FriOI	GRGCYC	2 cut(s)	61, 169
Fsp4HI	GCNGC	5 cut(s)	30, 33, 48, 82, 319
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	5 cut(s)	30, 33, 48, 82, 319
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	103, 143
HapII	CCGG	4 cut(s)	76, 99, 234, 359
HgaI	GACGC	1 cut(s)	9
Hin1I	GRCGYC	1 cut(s)	20
HincII	GTYRAC	2 cut(s)	24, 223
HindII	GTYRAC	2 cut(s)	24, 223
HpaI	GTTAAC	1 cut(s)	223
HpaII	CCGG	4 cut(s)	76, 99, 234, 359
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	24, 223
Hpy188I	TCNGA	2 cut(s)	164, 249
Hpy188III	TCNNGA	2 cut(s)	54, 170
Hpy8I	GTNNAC	2 cut(s)	24, 223
HpyAV	CCTTC	2 cut(s)	3, 265
HpyCH4V	TGCA	3 cut(s)	41, 81, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 38, 47, 56
Hsp92I	GRCGYC	1 cut(s)	20
Ksp22I	TGATCA	1 cut(s)	408
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	4 cut(s)	56, 72, 164, 299
Lsp1109I	GCAGC	3 cut(s)	59, 93, 330
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	278
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	6 cut(s)	87, 123, 203, 206, 215, 320
MfeI	CAATTG	1 cut(s)	14
MhlI	GDGCHC	2 cut(s)	61, 169
MluCI	AATT	2 cut(s)	14, 208
MnlI	CCTC	6 cut(s)	80, 83, 100, 103, 132, 186
MseI	TTAA	1 cut(s)	222
MspI	CCGG	4 cut(s)	76, 99, 234, 359
MspR9I	CCNGG	1 cut(s)	100
MunI	CAATTG	1 cut(s)	14
MwoI	GCNNNNNNNGC	4 cut(s)	26, 38, 47, 56
NciI	CCSGG	1 cut(s)	100
NdeII	GATC	1 cut(s)	408
NheI	GCTAGC	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	58
PinAI	ACCGGT	1 cut(s)	233
PkrI	GCNGC	5 cut(s)	31, 34, 49, 83, 320
Psp124BI	GAGCTC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	2 cut(s)	101, 141
PstNI	CAGNNNCTG	1 cut(s)	53
RsaI	GTAC	2 cut(s)	314, 387
RsaNI	GTAC	2 cut(s)	313, 386
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	5 cut(s)	30, 33, 48, 82, 319
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	2 cut(s)	101, 141
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	2 cut(s)	61, 169
SetI	ASST	6 cut(s)	52, 69, 169, 276, 283, 304
SfaNI	GCATC	1 cut(s)	225
Sse9I	AATT	2 cut(s)	14, 208
SsiI	CCGC	2 cut(s)	29, 32
SspMI	CTAG	1 cut(s)	278
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	98
TasI	AATT	2 cut(s)	14, 208
TatI	WGTACW	1 cut(s)	385
TauI	GCSGC	2 cut(s)	32, 35
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseI	GCWGC	3 cut(s)	47, 81, 318
XapI	RAATTY	1 cut(s)	208
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.