Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Reverse (-)

57340337 .. 57342091

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG394300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCCTCTTCAAAAGCTGCCATCCACATCCCACATTGCTTCTCTTCCATGGCGGCCAAAGGGTCTTTTCCCATCCGAGCTCTTGACCCTCGCAGACGACAAGAAGAAGAAGCAGAAGAGAATTCAGGCATCGTTAACAACGCCACCGGTTTCAACTCTCGGAACGATTTGGAATATCTGGGGAAGGTGCTAGCTGGTTCCATTGTGGGTGGAGCTGTAATAAAGTATGGCAGCATAGTTTTTCCTGAGATAGCCAGACCCAACGTCATACTGGCTCTTATTATGATATTCACTCCTGTCATTCTAGCTACTTTACTTCTGATCAAGCAAAGTAGTGCAAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.27

Weight (kDa)

8.93

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	121
AgeI	ACCGGT	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	12, 154
AhdI	GACNNNNNGTC	1 cut(s)	263
AluBI	AGCT	5 cut(s)	17, 80, 194, 215, 308
AluI	AGCT	5 cut(s)	17, 80, 194, 215, 308
Alw21I	GWGCWC	1 cut(s)	82
AoxI	GGCC	2 cut(s)	3, 54
ApeKI	GCWGC	2 cut(s)	17, 231
ApoI	RAATTY	1 cut(s)	121
AsiGI	ACCGGT	1 cut(s)	146
AsuNHI	GCTAGC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	4, 243
BccI	CCATC	2 cut(s)	29, 80
BclI	TGATCA	1 cut(s)	321
BfaI	CTAG	2 cut(s)	191, 305
BisI	GCNGC	3 cut(s)	18, 54, 232
BlsI	GCNGC	3 cut(s)	19, 55, 233
BmeRI	GACNNNNNGTC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	1 cut(s)	138
BmtI	GCTAGC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	3 cut(s)	21, 27, 72
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	4, 243
BshFI	GGCC	2 cut(s)	5, 56
BshTI	ACCGGT	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	147
BsnI	GGCC	2 cut(s)	5, 56
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	321
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	2 cut(s)	5, 56
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	199
BspOI	GCTAGC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	48
Bst6I	CTCTTC	3 cut(s)	13, 49, 111
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	3 cut(s)	21, 27, 72
BstKTI	GATC	1 cut(s)	324
BstMBI	GATC	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	4, 243
BsuRI	GGCC	2 cut(s)	5, 56
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	21, 27, 72
Cac8I	GCNNGC	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	146
CspAI	ACCGGT	1 cut(s)	146
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	9 cut(s)	5, 17, 56, 80, 194, 215, 254, 275, 308
CviKI_1	RGCY	9 cut(s)	5, 17, 56, 80, 194, 215, 254, 275, 308
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
DriI	GACNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	3 cut(s)	13, 49, 111
Eam1105I	GACNNNNNGTC	1 cut(s)	263
EarI	CTCTTC	3 cut(s)	13, 49, 111
Ecl136II	GAGCTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	52
FaiI	YATR	5 cut(s)	50, 228, 236, 269, 284
FatI	CATG	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	18, 54, 232
FokI	GGATG	3 cut(s)	8, 14, 59
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	3 cut(s)	18, 54, 232
FspBI	CTAG	2 cut(s)	191, 305
GluI	GCNGC	3 cut(s)	18, 54, 232
HaeIII	GGCC	2 cut(s)	5, 56
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HpaI	GTTAAC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	3 cut(s)	77, 162, 321
Hpy188III	TCNNGA	2 cut(s)	83, 245
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	338
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	321
KspAI	GTTAAC	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	321
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	8 cut(s)	111, 160, 164, 180, 257, 258, 268, 309
Lsp1109I	GCAGC	2 cut(s)	4, 243
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	191, 305
MaeII	ACGT	1 cut(s)	264
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	4 cut(s)	36, 116, 119, 128
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	1 cut(s)	121
MnlI	CCTC	2 cut(s)	16, 99
MseI	TTAA	1 cut(s)	135
MspI	CCGG	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	321
NheI	GCTAGC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	19, 55, 233
Psp124BI	GAGCTC	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	3 cut(s)	18, 54, 232
Sau3AI	GATC	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	7 cut(s)	19, 82, 189, 196, 217, 267, 310
SfaNI	GCATC	1 cut(s)	138
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	2 cut(s)	191, 305
SstI	GAGCTC	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	48
TaiI	ACGT	1 cut(s)	267
TasI	AATT	1 cut(s)	121
TauI	GCSGC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TseI	GCWGC	2 cut(s)	17, 231
XapI	RAATTY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XspI	CTAG	2 cut(s)	191, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.