Rroxscaffold_2G00109600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002834
Physical Location & Seq
Reverse (-)
33755980 .. 33757915
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109600.1

Sequence Viewer

Length: 276 bp
ATGGCGGCGGCAACTGCAGCAGCAGCTTCAGGAGCCCCCAAGCTCCTCCTCCGGTGCAGGCAGTCCTCCTCTTCCGGGCCTGCAAACAACTTCATGGCCTCTTCAAAAGCTGCCATCCACATCCCAGATTGCTTCTCTTCCACAAGGGCCAAAGTGTCTTCTCCCATCCGAGCTCTTGACCCTCGCAGACGACAAGAAGAAGAAGAAGCAGAAGAGAGTTCAAGCATCGTTAACAACACCACCGGTTTCAACTCTCAGGTTAATCGAGTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.58

Weight (kDa)

9.38

Isoelectric Point (pI)

79.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 8
AcuI CTGAAG 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 75
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 3 cut(s) 105, 222, 250
AluBI AGCT 5 cut(s) 26, 43, 110, 173, 272
AluI AGCT 5 cut(s) 26, 43, 110, 173, 272
Alw21I GWGCWC 1 cut(s) 175
AoxI GGCC 3 cut(s) 77, 96, 147
ApeKI GCWGC 4 cut(s) 17, 20, 23, 110
AsiGI ACCGGT 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 77, 147
AsuC2I CCSGG 1 cut(s) 76
BanII GRGCYC 2 cut(s) 37, 175
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 4 cut(s) 29, 32, 35, 97
BccI CCATC 2 cut(s) 122, 173
BcnI CCSGG 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 6 cut(s) 6, 9, 18, 21, 24, 111
BlsI GCNGC 6 cut(s) 7, 10, 19, 22, 25, 112
Bme1390I CCNGG 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 77, 147
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 76
BsaWI WCCGGW 2 cut(s) 51, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 242
BseGI GGATG 3 cut(s) 114, 120, 165
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 269
BseRI GAGGAG 3 cut(s) 35, 38, 58
BseXI GCAGC 4 cut(s) 29, 32, 35, 97
BsgI GTGCAG 1 cut(s) 76
BshFI GGCC 3 cut(s) 79, 98, 149
BshTI ACCGGT 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 175
BsiSI CCGG 3 cut(s) 52, 75, 243
BslI CCNNNNNNNGG 1 cut(s) 75
BsnI GGCC 3 cut(s) 79, 98, 149
Bsp1286I GDGCHC 2 cut(s) 37, 175
BspACI CCGC 2 cut(s) 5, 8
BspANI GGCC 3 cut(s) 79, 98, 149
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 34
BspMAI CTGCAG 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
Bst6I CTCTTC 4 cut(s) 76, 106, 142, 207
BstC8I GCNNGC 2 cut(s) 59, 81
BstDEI CTNAG 2 cut(s) 255, 273
BstF5I GGATG 3 cut(s) 114, 120, 165
BstMWI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 32
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 4 cut(s) 29, 32, 35, 97
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 3 cut(s) 79, 98, 149
BtsCI GGATG 3 cut(s) 114, 120, 165
Cac8I GCNNGC 2 cut(s) 59, 81
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 77, 147
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 1 cut(s) 94
CviJI RGCY 9 cut(s) 26, 35, 43, 79, 98, 110, 149, 173, 272
CviKI_1 RGCY 9 cut(s) 26, 35, 43, 79, 98, 110, 149, 173, 272
DdeI CTNAG 2 cut(s) 255, 273
Eam1104I CTCTTC 4 cut(s) 76, 106, 142, 207
EarI CTCTTC 4 cut(s) 76, 106, 142, 207
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 2 cut(s) 37, 175
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 173
EcoT38I GRGCYC 2 cut(s) 37, 175
FaeI CATG 1 cut(s) 97
FaiI YATR 1 cut(s) 95
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 6 cut(s) 6, 9, 18, 21, 24, 111
FokI GGATG 3 cut(s) 101, 107, 152
FriOI GRGCYC 2 cut(s) 37, 175
Fsp4HI GCNGC 6 cut(s) 6, 9, 18, 21, 24, 111
GluI GCNGC 6 cut(s) 6, 9, 18, 21, 24, 111
HaeIII GGCC 3 cut(s) 79, 98, 149
HapII CCGG 3 cut(s) 52, 75, 243
Hin1II CATG 1 cut(s) 97
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 3 cut(s) 52, 75, 243
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 2 cut(s) 30, 176
Hpy8I GTNNAC 1 cut(s) 232
HpyCH4V TGCA 3 cut(s) 17, 57, 83
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 32
HpyF3I CTNAG 2 cut(s) 255, 273
Hsp92II CATG 1 cut(s) 97
KspAI GTTAAC 1 cut(s) 232
LmnI GCTCC 2 cut(s) 32, 48
LpnPI CCDG 8 cut(s) 15, 43, 65, 88, 93, 138, 242, 256
Lsp1109I GCAGC 4 cut(s) 29, 32, 35, 97
LweI GCATC 1 cut(s) 234
MboII GAAGA 8 cut(s) 63, 93, 129, 150, 209, 212, 215, 224
MhlI GDGCHC 2 cut(s) 37, 175
MnlI CCTC 6 cut(s) 56, 59, 76, 79, 109, 192
MseI TTAA 2 cut(s) 231, 261
MspI CCGG 3 cut(s) 52, 75, 243
MspR9I CCNGG 1 cut(s) 76
MwoI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 32
NciI CCSGG 1 cut(s) 76
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 34
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 6 cut(s) 7, 10, 19, 22, 25, 112
Psp124BI GAGCTC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 2 cut(s) 77, 147
PstI CTGCAG 1 cut(s) 19
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 231, 261
SatI GCNGC 6 cut(s) 6, 9, 18, 21, 24, 111
Sau96I GGNCC 2 cut(s) 77, 147
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 2 cut(s) 37, 175
SetI ASST 6 cut(s) 28, 45, 112, 175, 261, 274
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 15
SsiI CCGC 2 cut(s) 5, 8
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 74
TaqI TCGA 1 cut(s) 265
TauI GCSGC 2 cut(s) 8, 11
Tru1I TTAA 2 cut(s) 231, 261
Tru9I TTAA 2 cut(s) 231, 261
TseI GCWGC 4 cut(s) 17, 20, 23, 110
TspDTI ATGAA 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.