Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Forward (+)

34057984 .. 34060092

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCGGCGGCAACTGCTCTTCAAAAGCTGCCATCCACCTCCCAGATTGCTTCTCTTCCACAAGGGCCAAAGGGTCTTCTCCCATCCGAGCTCTTGACCCTCGCGGACGACAAGAAGAAGAAGCAGAAGAGAATTCAGGCATCGTTAACAACGCCACCGGTTTCAACTCTCGGTCGGAATAGTTTGGATAAGGAATTCAATATGAACGATTTGGAATATCTGGGGAAGGTGCTAGCTGGTTCCATTGTGGGTGGAGCTGTAATAAAGTATGGCAGCATAGTTTTTCCTGAGATAACCAGACCCAACGTCATACTGGCTCTTATTATGATATTCACTCCTGTCATTCTAGCTACTTTACTTCTGATCAAGCAAAGTCGTGCAAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

13.75

Weight (kDa)

9.93

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	104
AciI	CCGC	3 cut(s)	5, 8, 104
AcsI	RAATTY	2 cut(s)	132, 194
AgeI	ACCGGT	1 cut(s)	157
AgsI	TTSAA	3 cut(s)	23, 165, 199
AhdI	GACNNNNNGTC	1 cut(s)	305
AluBI	AGCT	5 cut(s)	28, 91, 236, 257, 350
AluI	AGCT	5 cut(s)	28, 91, 236, 257, 350
Alw21I	GWGCWC	1 cut(s)	93
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	28, 273
ApoI	RAATTY	2 cut(s)	132, 194
AsiGI	ACCGGT	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	65
AsuNHI	GCTAGC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	15, 285
BccI	CCATC	2 cut(s)	40, 91
BclI	TGATCA	1 cut(s)	363
BfaI	CTAG	2 cut(s)	233, 347
BisI	GCNGC	4 cut(s)	6, 9, 29, 274
BlsI	GCNGC	4 cut(s)	7, 10, 30, 275
BmeRI	GACNNNNNGTC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	241
BmsI	GCATC	1 cut(s)	149
BmtI	GCTAGC	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	157
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	318
BseGI	GGATG	2 cut(s)	32, 83
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	2 cut(s)	15, 285
Bsh1236I	CGCG	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	67
BshTI	ACCGGT	1 cut(s)	157
BsiEI	CGRYCG	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	158
BsnI	GGCC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	363
BspACI	CCGC	3 cut(s)	5, 8, 104
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	241
BspOI	GCTAGC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	318
BssAI	RCCGGY	1 cut(s)	157
BssMI	GATC	1 cut(s)	363
Bst6I	CTCTTC	3 cut(s)	24, 60, 122
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	32, 83
BstFNI	CGCG	1 cut(s)	104
BstKTI	GATC	1 cut(s)	366
BstMBI	GATC	1 cut(s)	363
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	2 cut(s)	15, 285
BstV2I	GAAGAC	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	32, 83
Cac8I	GCNNGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	65
CspAI	ACCGGT	1 cut(s)	157
CviJI	RGCY	7 cut(s)	28, 67, 91, 236, 257, 317, 350
CviKI_1	RGCY	7 cut(s)	28, 67, 91, 236, 257, 317, 350
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
DriI	GACNNNNNGTC	1 cut(s)	305
Eam1104I	CTCTTC	3 cut(s)	24, 60, 122
Eam1105I	GACNNNNNGTC	1 cut(s)	305
EarI	CTCTTC	3 cut(s)	24, 60, 122
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	93
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoRI	GAATTC	2 cut(s)	132, 194
EcoT38I	GRGCYC	1 cut(s)	93
FaiI	YATR	5 cut(s)	203, 270, 278, 311, 326
FbaI	TGATCA	1 cut(s)	363
Fnu4HI	GCNGC	4 cut(s)	6, 9, 29, 274
FokI	GGATG	2 cut(s)	19, 70
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	4 cut(s)	6, 9, 29, 274
FspBI	CTAG	2 cut(s)	233, 347
GluI	GCNGC	4 cut(s)	6, 9, 29, 274
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HpaI	GTTAAC	1 cut(s)	147
HpaII	CCGG	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	3 cut(s)	88, 177, 363
Hpy188III	TCNNGA	2 cut(s)	94, 287
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	363
KspAI	GTTAAC	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	363
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	9 cut(s)	56, 122, 171, 206, 222, 299, 300, 310, 351
Lsp1109I	GCAGC	2 cut(s)	15, 285
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	2 cut(s)	233, 347
MaeII	ACGT	1 cut(s)	306
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	6 cut(s)	11, 47, 68, 127, 130, 139
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	2 cut(s)	132, 194
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	2 cut(s)	49, 110
MseI	TTAA	1 cut(s)	146
MspI	CCGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	363
NheI	GCTAGC	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	24
PinAI	ACCGGT	1 cut(s)	157
PkrI	GCNGC	4 cut(s)	7, 10, 30, 275
Psp124BI	GAGCTC	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	4 cut(s)	6, 9, 29, 274
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	8 cut(s)	30, 41, 93, 231, 238, 259, 309, 352
SfaNI	GCATC	1 cut(s)	149
Sse9I	AATT	2 cut(s)	132, 194
SsiI	CCGC	3 cut(s)	5, 8, 104
SspMI	CTAG	2 cut(s)	233, 347
SstI	GAGCTC	1 cut(s)	93
TaiI	ACGT	1 cut(s)	309
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	2 cut(s)	132, 194
TauI	GCSGC	2 cut(s)	8, 11
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TseI	GCWGC	2 cut(s)	28, 273
TspDTI	ATGAA	1 cut(s)	218
XapI	RAATTY	2 cut(s)	132, 194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	2 cut(s)	233, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.