Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Reverse (-)

49540969 .. 49542810

Gene Structure 1842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G030260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGGCGGCAACTGCAGCAGCAGCTTCAGGAGCCCCCAAGCTCCTCCTCCGGTACTCTCCCTCTTCTGGGCCTGCAAACAACTTCATGGCCTCTTCAAAAGCTGCCATCCACATCCCACATTGCTTCTCTTCCATGGCGGCCAAAGGGTCTTTTCCCATCCGAGCTCTTGACCCTCGCAGACGACAAGAAGAAGAAGCAGAAGAGAATTCAGGCATCGTTAACAACGCCACCGGTTTCAACTCTCGGAACGATTTGGAATATCTGGGGAAGGTGCTAGCTGGTTCCATTGTGGGTGGAGCTGTAATAAAGTATGGCAGCATAGTTTTTCCTGAGATAGCCAGACCCAACGTCATACTGGCTCTTATTATGATATTCACTCCTGTCATTCTAGCTACTTTACTTCTGATCAAGCAAAGTAGTGCAAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.06

Weight (kDa)

9.51

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 8, 140
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	68, 69
AgeI	ACCGGT	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	99, 241
AhdI	GACNNNNNGTC	1 cut(s)	350
AluBI	AGCT	7 cut(s)	26, 43, 104, 167, 281, 302, 395
AluI	AGCT	7 cut(s)	26, 43, 104, 167, 281, 302, 395
Alw21I	GWGCWC	1 cut(s)	169
AoxI	GGCC	3 cut(s)	71, 90, 141
ApeKI	GCWGC	5 cut(s)	17, 20, 23, 104, 318
ApoI	RAATTY	1 cut(s)	208
AsiGI	ACCGGT	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	71
AsuNHI	GCTAGC	1 cut(s)	277
BanII	GRGCYC	2 cut(s)	37, 169
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	5 cut(s)	29, 32, 35, 91, 330
BccI	CCATC	2 cut(s)	116, 167
BclI	TGATCA	1 cut(s)	408
BfaI	CTAG	2 cut(s)	278, 392
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 105, 141, 319
BlsI	GCNGC	8 cut(s)	7, 10, 19, 22, 25, 106, 142, 320
BmeRI	GACNNNNNGTC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	2 cut(s)	34, 286
BmsI	GCATC	1 cut(s)	225
BmtI	GCTAGC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	2 cut(s)	51, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 69
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	3 cut(s)	108, 114, 159
BseLI	CCNNNNNNNGG	2 cut(s)	68, 69
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	2 cut(s)	35, 38
BseXI	GCAGC	5 cut(s)	29, 32, 35, 91, 330
BshFI	GGCC	3 cut(s)	73, 92, 143
BshTI	ACCGGT	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	52, 234
BslI	CCNNNNNNNGG	2 cut(s)	68, 69
BsnI	GGCC	3 cut(s)	73, 92, 143
Bsp1286I	GDGCHC	2 cut(s)	37, 169
Bsp143I	GATC	1 cut(s)	408
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	3 cut(s)	5, 8, 140
BspANI	GGCC	3 cut(s)	73, 92, 143
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	34, 286
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	135
Bst6I	CTCTTC	4 cut(s)	70, 100, 136, 198
BstC8I	GCNNGC	2 cut(s)	75, 279
BstDEI	CTNAG	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	3 cut(s)	108, 114, 159
BstKTI	GATC	1 cut(s)	411
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	5 cut(s)	29, 32, 35, 91, 330
BsuRI	GGCC	3 cut(s)	73, 92, 143
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	108, 114, 159
Cac8I	GCNNGC	2 cut(s)	75, 279
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	55
CspAI	ACCGGT	1 cut(s)	233
CviAII	CATG	2 cut(s)	88, 136
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
DriI	GACNNNNNGTC	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	4 cut(s)	70, 100, 136, 198
Eam1105I	GACNNNNNGTC	1 cut(s)	350
EarI	CTCTTC	4 cut(s)	70, 100, 136, 198
Ecl136II	GAGCTC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	37, 169
Eco53kI	GAGCTC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	12
EcoICRI	GAGCTC	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	37, 169
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	91, 139
FaiI	YATR	6 cut(s)	89, 137, 315, 323, 356, 371
FatI	CATG	2 cut(s)	87, 135
FbaI	TGATCA	1 cut(s)	408
Fnu4HI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 105, 141, 319
FokI	GGATG	3 cut(s)	95, 101, 146
FriOI	GRGCYC	2 cut(s)	37, 169
Fsp4HI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 105, 141, 319
FspBI	CTAG	2 cut(s)	278, 392
GluI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 105, 141, 319
HaeIII	GGCC	3 cut(s)	73, 92, 143
HapII	CCGG	2 cut(s)	52, 234
Hin1II	CATG	2 cut(s)	91, 139
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HpaI	GTTAAC	1 cut(s)	223
HpaII	CCGG	2 cut(s)	52, 234
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	164, 249, 408
Hpy188III	TCNNGA	3 cut(s)	30, 170, 332
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	3 cut(s)	17, 77, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	91, 139
Ksp22I	TGATCA	1 cut(s)	408
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	3 cut(s)	32, 48, 299
Lsp1109I	GCAGC	5 cut(s)	29, 32, 35, 91, 330
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	278, 392
MaeII	ACGT	1 cut(s)	351
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	6 cut(s)	57, 87, 123, 203, 206, 215
MhlI	GDGCHC	2 cut(s)	37, 169
MluCI	AATT	1 cut(s)	208
MnlI	CCTC	5 cut(s)	56, 59, 73, 103, 186
MseI	TTAA	1 cut(s)	222
MspI	CCGG	2 cut(s)	52, 234
MwoI	GCNNNNNNNGC	4 cut(s)	14, 17, 23, 32
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	408
NheI	GCTAGC	1 cut(s)	277
NlaIII	CATG	2 cut(s)	91, 139
NlaIV	GGNNCC	2 cut(s)	34, 286
PinAI	ACCGGT	1 cut(s)	233
PkrI	GCNGC	8 cut(s)	7, 10, 19, 22, 25, 106, 142, 320
Psp124BI	GAGCTC	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	34, 286
PspPI	GGNCC	1 cut(s)	71
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	8 cut(s)	6, 9, 18, 21, 24, 105, 141, 319
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	1 cut(s)	71
SduI	GDGCHC	2 cut(s)	37, 169
SetI	ASST	9 cut(s)	28, 45, 106, 169, 276, 283, 304, 354, 397
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	3 cut(s)	5, 8, 140
SspMI	CTAG	2 cut(s)	278, 392
SstI	GAGCTC	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	135
TaiI	ACGT	1 cut(s)	354
TasI	AATT	1 cut(s)	208
TauI	GCSGC	3 cut(s)	8, 11, 143
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseI	GCWGC	5 cut(s)	17, 20, 23, 104, 318
TspDTI	ATGAA	1 cut(s)	76
XapI	RAATTY	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XspI	CTAG	2 cut(s)	278, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.