Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Forward (+)

53574350 .. 53610842

Gene Structure 36493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG379300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCGGCGGCAACTGCAGCAGCAGCAGCTACTGGAGCCCCCAAGTTCCTCCTCCGGTGCAGGCACTCCCCCTCTTCTGGGCCTGCAAACAACTTCATGGCCTCTTCAAAAGCTGCCATCCATATCCCACATTGCTTCTCTTCCACAAGGGCCAAAGGGTCTTTCCCCATCCGAGCTCTTGACCCTCGCAGACGACAAGAGGAAGAAGAAGCAGAAGAGAATTCAAGCATAGTTAACAACGCCACCGGTTTCAACTATCGGAATGATTTGGAATATCTGGGGATGTTGCTAGCTGGTTCTATTGTCGGTGGAGCTGTAATAAAGTCAGCAACATCATTCAACATAAAAGAATATAGAATTAATTTCAAGACCAGAAATCTCTATACACGAAAACAGAACACTATGCATCTAAGAGCTGGTTTGAATCCTGCTAAACGAAGTCAATTCTTGAAGCGTGCTCACCAATACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.33

Weight (kDa)

10.36

Isoelectric Point (pI)

54.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 8
AcsI	RAATTY	1 cut(s)	220
AfiI	CCNNNNNNNGG	2 cut(s)	77, 78
AgeI	ACCGGT	1 cut(s)	245
AgsI	TTSAA	7 cut(s)	108, 225, 253, 340, 367, 424, 451
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	6 cut(s)	29, 113, 176, 293, 314, 416
AluI	AGCT	6 cut(s)	29, 113, 176, 293, 314, 416
Alw21I	GWGCWC	2 cut(s)	178, 460
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	3 cut(s)	80, 99, 150
ApeKI	GCWGC	5 cut(s)	17, 20, 23, 26, 113
ApoI	RAATTY	1 cut(s)	220
AseI	ATTAAT	1 cut(s)	360
AsiGI	ACCGGT	1 cut(s)	245
AspS9I	GGNCC	2 cut(s)	80, 150
AsuHPI	GGTGA	1 cut(s)	452
AsuNHI	GCTAGC	1 cut(s)	289
BanII	GRGCYC	2 cut(s)	40, 178
Bbv12I	GWGCWC	2 cut(s)	178, 460
BbvI	GCAGC	5 cut(s)	29, 32, 35, 38, 100
BccI	CCATC	2 cut(s)	125, 176
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 27, 114
BlsI	GCNGC	7 cut(s)	7, 10, 19, 22, 25, 28, 115
BmgT120I	GGNCC	2 cut(s)	80, 150
BmiI	GGNNCC	1 cut(s)	37
BmsI	GCATC	1 cut(s)	415
BmtI	GCTAGC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	54
BsaWI	WCCGGW	2 cut(s)	54, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 78
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	130
BseGI	GGATG	3 cut(s)	117, 168, 288
BseLI	CCNNNNNNNGG	2 cut(s)	77, 78
BseMI	GCAATG	1 cut(s)	130
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	5 cut(s)	29, 32, 35, 38, 100
BsgI	GTGCAG	1 cut(s)	79
BshFI	GGCC	3 cut(s)	82, 101, 152
BshTI	ACCGGT	1 cut(s)	245
BsiHKAI	GWGCWC	2 cut(s)	178, 460
BsiSI	CCGG	2 cut(s)	55, 246
BslI	CCNNNNNNNGG	2 cut(s)	77, 78
BsnI	GGCC	3 cut(s)	82, 101, 152
Bsp1286I	GDGCHC	3 cut(s)	40, 178, 460
BspACI	CCGC	2 cut(s)	5, 8
BspANI	GGCC	3 cut(s)	82, 101, 152
BspLI	GGNNCC	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	245
Bst6I	CTCTTC	4 cut(s)	79, 109, 145, 210
BstC8I	GCNNGC	4 cut(s)	62, 84, 291, 456
BstDEI	CTNAG	1 cut(s)	410
BstF5I	GGATG	3 cut(s)	117, 168, 288
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 26, 35
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	5 cut(s)	29, 32, 35, 38, 100
BsuRI	GGCC	3 cut(s)	82, 101, 152
BtsCI	GGATG	3 cut(s)	117, 168, 288
Cac8I	GCNNGC	4 cut(s)	62, 84, 291, 456
CaiI	CAGNNNCTG	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	80, 150
CspAI	ACCGGT	1 cut(s)	245
CviAII	CATG	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	410
Eam1104I	CTCTTC	4 cut(s)	79, 109, 145, 210
EarI	CTCTTC	4 cut(s)	79, 109, 145, 210
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	2 cut(s)	40, 178
Eco53kI	GAGCTC	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	408
EcoT38I	GRGCYC	2 cut(s)	40, 178
FaeI	CATG	1 cut(s)	100
FaiI	YATR	7 cut(s)	98, 123, 230, 344, 354, 384, 404
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 27, 114
FokI	GGATG	3 cut(s)	104, 155, 295
FriOI	GRGCYC	2 cut(s)	40, 178
Fsp4HI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 27, 114
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 27, 114
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	82, 101, 152
HapII	CCGG	2 cut(s)	55, 246
Hin1II	CATG	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	1 cut(s)	424
HpaI	GTTAAC	1 cut(s)	235
HpaII	CCGG	2 cut(s)	55, 246
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	2 cut(s)	173, 261
Hpy188III	TCNNGA	3 cut(s)	179, 367, 448
Hpy8I	GTNNAC	1 cut(s)	235
HpyCH4V	TGCA	4 cut(s)	17, 60, 86, 406
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 26, 35
HpyF3I	CTNAG	1 cut(s)	410
Hsp92II	CATG	1 cut(s)	100
KspAI	GTTAAC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	35, 311
Lsp1109I	GCAGC	5 cut(s)	29, 32, 35, 38, 100
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	290
MboII	GAAGA	6 cut(s)	66, 96, 132, 215, 218, 227
MhlI	GDGCHC	3 cut(s)	40, 178, 460
MluCI	AATT	4 cut(s)	220, 357, 361, 443
MnlI	CCTC	6 cut(s)	59, 62, 82, 112, 193, 195
Mph1103I	ATGCAT	1 cut(s)	408
MseI	TTAA	2 cut(s)	234, 360
MspI	CCGG	2 cut(s)	55, 246
MwoI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 26, 35
NheI	GCTAGC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	424
PinAI	ACCGGT	1 cut(s)	245
PkrI	GCNGC	7 cut(s)	7, 10, 19, 22, 25, 28, 115
PshBI	ATTAAT	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	2 cut(s)	80, 150
PstI	CTGCAG	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	234, 360
SatI	GCNGC	7 cut(s)	6, 9, 18, 21, 24, 27, 114
Sau96I	GGNCC	2 cut(s)	80, 150
SduI	GDGCHC	3 cut(s)	40, 178, 460
SetI	ASST	6 cut(s)	31, 115, 178, 295, 316, 418
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	1 cut(s)	15
Sse9I	AATT	4 cut(s)	220, 357, 361, 443
SsiI	CCGC	2 cut(s)	5, 8
SspMI	CTAG	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	178
TasI	AATT	4 cut(s)	220, 357, 361, 443
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	2 cut(s)	234, 360
Tru9I	TTAA	2 cut(s)	234, 360
TseI	GCWGC	5 cut(s)	17, 20, 23, 26, 113
TspDTI	ATGAA	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	360
XapI	RAATTY	1 cut(s)	220
XspI	CTAG	1 cut(s)	290
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.