Rroxscaffold_2G00109810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002834
Physical Location & Seq
Forward (+)
34018923 .. 34021116
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109810.1

Sequence Viewer

Length: 426 bp
ATGGCGGCGGCAACTGCAGCAGCAGCTTCAGGAGCCCCCAGGCTCCTCCTCCGGTACTCCCCTCTTCTGGGCCGGCAACCATCTTCATGGCCTCTTCAAAAGCTGCCATCCACATCCCAGATAGCTTCTCTTCCACAAGGGCCAAAGGGTCTTTTCCCATCCGAGCTCTTGACCCTCGCAGACGACAAGAAGAAGAAGCAGAAGAGAATTCAGGCATCGTTAACAACGCCACCGGTTTCAACTCTCGGTCGGAATAGTTTGGATAAGGAATTCAATATGAACGATTTGGAATATCTGGGGAAGGTGCTAGCTGGTTCCATTGTGGGTGGAGCTGTAATAAAGTATGGCAGCATAGTTTTTCCTGAGATAACCAGACCCAACGTCATACTGGCTCTTATTATGATATTCACTCTCCTGTCATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.11

Weight (kDa)

10.06

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 8
AcsI RAATTY 2 cut(s) 207, 269
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 67, 68
AgeI ACCGGT 1 cut(s) 232
AgsI TTSAA 3 cut(s) 98, 240, 274
AhdI GACNNNNNGTC 1 cut(s) 380
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 6 cut(s) 26, 103, 125, 166, 311, 332
AluI AGCT 6 cut(s) 26, 103, 125, 166, 311, 332
Alw21I GWGCWC 1 cut(s) 168
AoxI GGCC 3 cut(s) 70, 89, 140
ApeKI GCWGC 5 cut(s) 17, 20, 23, 103, 348
ApoI RAATTY 2 cut(s) 207, 269
AsiGI ACCGGT 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 70, 140
AsuNHI GCTAGC 1 cut(s) 307
BanII GRGCYC 2 cut(s) 37, 168
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 5 cut(s) 29, 32, 35, 90, 360
BccI CCATC 3 cut(s) 88, 115, 166
BciT130I CCWGG 1 cut(s) 40
BfaI CTAG 2 cut(s) 308, 424
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 7 cut(s) 6, 9, 18, 21, 24, 104, 349
BlsI GCNGC 7 cut(s) 7, 10, 19, 22, 25, 105, 350
Bme1390I CCNGG 1 cut(s) 40
BmeRI GACNNNNNGTC 1 cut(s) 380
BmgT120I GGNCC 2 cut(s) 70, 140
BmiI GGNNCC 3 cut(s) 34, 44, 316
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 224
BmtI GCTAGC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 38
BsaWI WCCGGW 2 cut(s) 51, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 68
Bse118I RCCGGY 2 cut(s) 72, 232
Bse1I ACTGG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 3 cut(s) 107, 113, 158
BseLI CCNNNNNNNGG 2 cut(s) 67, 68
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 393
BseRI GAGGAG 2 cut(s) 35, 38
BseXI GCAGC 5 cut(s) 29, 32, 35, 90, 360
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 3 cut(s) 72, 91, 142
BshTI ACCGGT 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 3 cut(s) 52, 73, 233
BslI CCNNNNNNNGG 2 cut(s) 67, 68
BsnI GGCC 3 cut(s) 72, 91, 142
Bsp1286I GDGCHC 2 cut(s) 37, 168
BspACI CCGC 2 cut(s) 5, 8
BspANI GGCC 3 cut(s) 72, 91, 142
BspCNI CTCAG 1 cut(s) 355
BspLI GGNNCC 3 cut(s) 34, 44, 316
BspMAI CTGCAG 1 cut(s) 19
BspOI GCTAGC 1 cut(s) 311
BsrFI RCCGGY 2 cut(s) 72, 232
BsrI ACTGG 1 cut(s) 393
BssAI RCCGGY 2 cut(s) 72, 232
BssECI CCNNGG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 40
Bst6I CTCTTC 4 cut(s) 69, 99, 135, 197
BstC8I GCNNGC 2 cut(s) 74, 309
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 3 cut(s) 107, 113, 158
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 32
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 5 cut(s) 29, 32, 35, 90, 360
BstXI CCANNNNNNTGG 1 cut(s) 87
BsuRI GGCC 3 cut(s) 72, 91, 142
BtsCI GGATG 3 cut(s) 107, 113, 158
Cac8I GCNNGC 2 cut(s) 74, 309
Cfr10I RCCGGY 2 cut(s) 72, 232
Cfr13I GGNCC 2 cut(s) 70, 140
Csp6I GTAC 1 cut(s) 55
CspAI ACCGGT 1 cut(s) 232
CviAII CATG 1 cut(s) 87
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 363
DriI GACNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 4 cut(s) 69, 99, 135, 197
Eam1105I GACNNNNNGTC 1 cut(s) 380
EarI CTCTTC 4 cut(s) 69, 99, 135, 197
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 2 cut(s) 37, 168
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 166
EcoRI GAATTC 2 cut(s) 207, 269
EcoRII CCWGG 1 cut(s) 38
EcoT38I GRGCYC 2 cut(s) 37, 168
FaeI CATG 1 cut(s) 90
FaiI YATR 6 cut(s) 88, 278, 345, 353, 386, 401
FatI CATG 1 cut(s) 86
Fnu4HI GCNGC 7 cut(s) 6, 9, 18, 21, 24, 104, 349
FokI GGATG 3 cut(s) 94, 100, 145
FriOI GRGCYC 2 cut(s) 37, 168
Fsp4HI GCNGC 7 cut(s) 6, 9, 18, 21, 24, 104, 349
FspBI CTAG 2 cut(s) 308, 424
GluI GCNGC 7 cut(s) 6, 9, 18, 21, 24, 104, 349
HaeIII GGCC 3 cut(s) 72, 91, 142
HapII CCGG 3 cut(s) 52, 73, 233
Hin1II CATG 1 cut(s) 90
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HpaI GTTAAC 1 cut(s) 222
HpaII CCGG 3 cut(s) 52, 73, 233
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 2 cut(s) 163, 252
Hpy188III TCNNGA 3 cut(s) 30, 169, 362
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 32
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 1 cut(s) 90
KroI GCCGGC 1 cut(s) 72
KroNI GCCGGC 1 cut(s) 74
KspAI GTTAAC 1 cut(s) 222
LmnI GCTCC 3 cut(s) 32, 48, 329
Lsp1109I GCAGC 5 cut(s) 29, 32, 35, 90, 360
LweI GCATC 1 cut(s) 224
MaeI CTAG 2 cut(s) 308, 424
MaeII ACGT 1 cut(s) 381
MboII GAAGA 7 cut(s) 56, 75, 86, 122, 202, 205, 214
MhlI GDGCHC 2 cut(s) 37, 168
MluCI AATT 2 cut(s) 207, 269
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 5 cut(s) 56, 59, 72, 102, 185
MroNI GCCGGC 1 cut(s) 72
MseI TTAA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 85
MspI CCGG 3 cut(s) 52, 73, 233
MspR9I CCNGG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 32
NaeI GCCGGC 1 cut(s) 74
NgoMIV GCCGGC 1 cut(s) 72
NheI GCTAGC 1 cut(s) 307
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 3 cut(s) 34, 44, 316
PdiI GCCGGC 1 cut(s) 74
PinAI ACCGGT 1 cut(s) 232
PkrI GCNGC 7 cut(s) 7, 10, 19, 22, 25, 105, 350
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 3 cut(s) 34, 44, 316
PspPI GGNCC 2 cut(s) 70, 140
PstI CTGCAG 1 cut(s) 19
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 85
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 7 cut(s) 6, 9, 18, 21, 24, 104, 349
Sau96I GGNCC 2 cut(s) 70, 140
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 2 cut(s) 37, 168
SetI ASST 8 cut(s) 28, 105, 127, 168, 306, 313, 334, 384
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 85
Sse9I AATT 2 cut(s) 207, 269
SsiI CCGC 2 cut(s) 5, 8
SspMI CTAG 2 cut(s) 308, 424
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 38
TaiI ACGT 1 cut(s) 384
TaqII GACCGA 1 cut(s) 236
TasI AATT 2 cut(s) 207, 269
TauI GCSGC 2 cut(s) 8, 11
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TseI GCWGC 5 cut(s) 17, 20, 23, 103, 348
TspDTI ATGAA 2 cut(s) 75, 293
XapI RAATTY 2 cut(s) 207, 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XspI CTAG 2 cut(s) 308, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.