Rorug02G0319700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002834
Physical Location & Seq
Forward (+)
39127226 .. 39127417
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0319700.1

Sequence Viewer

Length: 192 bp
ATGGCTTTTTTGAGTATCTCCTTCATCTTAACTCTCTTATGCCTTGTGGGTTATCAGCTTTTGTGCCTAATGGACCTCGAGGACGATTACATCAACTCATATGATTCATCATCTCGGATAAACCGTACTGTTTTGCCAGAGTTTATCGTTCAAGGAGTTTTCTGCGTCATTCTTTTTATAACGAGACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.26

Weight (kDa)

4.52

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cornichon PF03311 5 - 63 6.7e-17 Cornichon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AbsI CCTCGAGG 1 cut(s) 77
AfaI GTAC 1 cut(s) 127
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 73
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 178
BsoBI CYCGRG 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 125, 130
BstMAI GTCTC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 73
CseI GACGC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 126
CviJI RGCY 2 cut(s) 5, 58
CviKI_1 RGCY 2 cut(s) 5, 58
CviQI GTAC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 77
FaiI YATR 4 cut(s) 40, 100, 102, 179
FauNDI CATATG 1 cut(s) 100
HgaI GACGC 1 cut(s) 154
HinfI GANTC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 125, 130
LpnPI CCDG 1 cut(s) 150
MnlI CCTC 2 cut(s) 73, 86
MseI TTAA 1 cut(s) 29
NdeI CATATG 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PfeI GAWTC 1 cut(s) 104
PsiI TTATAA 1 cut(s) 179
PspPI GGNCC 1 cut(s) 73
PspXI VCTCGAGB 1 cut(s) 77
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 29
Sau96I GGNCC 1 cut(s) 73
SetI ASST 2 cut(s) 60, 78
Sfr274I CTCGAG 1 cut(s) 77
SgeI CNNG 6 cut(s) 56, 89, 91, 126, 149, 164
SinI GGWCC 1 cut(s) 73
SlaI CTCGAG 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
TaaI ACNGT 2 cut(s) 125, 130
TaqI TCGA 1 cut(s) 78
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 13, 96
VpaK11BI GGWCC 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.