Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002834

Physical Location & Seq

Genomic Coordinates Reverse (-)

51641601 .. 51643463

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019408

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGGCGGCAACTGCAGCAGCTACTGAAGCCCCCAAGTTCCTCCTCGGGTGCAGGCACTCCCCCTCTTCTGGGCCTGCAAACAACTTCATGGCCTCTTCAAAAGCTGCCATCCACATCCCACATTGCTTCTCTTCCACAAGGGCCAAAGGGTCTTTTCCCATCCGAGCTCTTGACCCTCGCAGACGGCAAGAAGAAGAAGAAGAAGAGAATTCAAGCATCGTTAACAACACCACCGGTTTCAACTCTCAGAACGATTTGGAATATCTGGGGAAGGTGCTAGCTGGTTCCATTGTGGGTGGAGCTGTAATAAAGTATGGCAGCATAGTTTTTCCTGAGATAACCAGACCCAACATCATACTGGCTCTTATTATGATATTCACTCCTGTCATTCTAGCTACTTTACTTCTGATCAAGCAAAGTCGTGCGAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

15.5

Weight (kDa)

9.1

Isoelectric Point (pI)

63.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15900
fragaria_vesca	FvH4_6g29470
malus_domestica	MD17G1213600.v1.1
prunus_persica	Prupe.3G089500_v2.0.a1
pyrus_communis	pycom17g21850
rosa_chinensis	RchiOBHm_Chr2g0134671 RchiOBHm_Chr2g0134751 RchiOBHm_Chr2g0134971
rosa_laevigata	RLG00000019408 RLG00000019419 RLG00000019434
rosa_multiflora	Rmu_sc0000718.1_g000038 Rmu_sc0001385.1_g000010 Rmu_ssc0000438.1_g000024
rosa_roxburghii	Rroxscaffold_2G00109530 Rroxscaffold_2G00109600 Rroxscaffold_2G00109810 Rroxscaffold_2G00109840 Rroxscaffold_2G00109910
rosa_rugosa	Rorug02G0307200 Rorug02G0319000 Rorug02G0319700 Rorug02G0332100
rosa_samantha	Rh2AG372200 Rh2AG374400 Rh2AG374500 Rh2BG376900 Rh2BG377400 Rh2BG379300 Rh2CG355300 Rh2CG355500 Rh2DG394100 Rh2DG394300 Rh2DG395900 Rh3DG355600
rosa_wichuraiana	Rw2G030250 Rw2G030260 Rw2G030450 Rw2G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 8
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	71, 72
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	3 cut(s)	102, 216, 244
AluBI	AGCT	6 cut(s)	23, 107, 170, 284, 305, 398
AluI	AGCT	6 cut(s)	23, 107, 170, 284, 305, 398
Alw21I	GWGCWC	1 cut(s)	172
AlwNI	CAGNNNCTG	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	3 cut(s)	74, 93, 144
ApeKI	GCWGC	4 cut(s)	17, 20, 107, 321
ApoI	RAATTY	1 cut(s)	211
AsiGI	ACCGGT	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	74, 144
AsuNHI	GCTAGC	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	4 cut(s)	29, 32, 94, 333
BccI	CCATC	2 cut(s)	119, 170
BceAI	ACGGC	1 cut(s)	203
BclI	TGATCA	1 cut(s)	411
BfaI	CTAG	2 cut(s)	281, 395
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	6 cut(s)	6, 9, 18, 21, 108, 322
BlsI	GCNGC	6 cut(s)	7, 10, 19, 22, 109, 323
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	74, 144
BmiI	GGNNCC	1 cut(s)	289
BmsI	GCATC	1 cut(s)	228
BmtI	GCTAGC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 72
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	3 cut(s)	111, 117, 162
BseLI	CCNNNNNNNGG	2 cut(s)	71, 72
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	263, 327
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	4 cut(s)	29, 32, 94, 333
BsgI	GTGCAG	1 cut(s)	73
BshFI	GGCC	3 cut(s)	76, 95, 146
BshTI	ACCGGT	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	172
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	71, 72
BsnI	GGCC	3 cut(s)	76, 95, 146
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	2 cut(s)	5, 8
BspANI	GGCC	3 cut(s)	76, 95, 146
BspCNI	CTCAG	2 cut(s)	262, 328
BspLI	GGNNCC	1 cut(s)	289
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	1 cut(s)	411
Bst6I	CTCTTC	4 cut(s)	73, 103, 139, 201
BstC8I	GCNNGC	3 cut(s)	56, 78, 282
BstDEI	CTNAG	2 cut(s)	249, 336
BstF5I	GGATG	3 cut(s)	111, 117, 162
BstKTI	GATC	1 cut(s)	414
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 17, 29
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	4 cut(s)	29, 32, 94, 333
BsuRI	GGCC	3 cut(s)	76, 95, 146
BtsCI	GGATG	3 cut(s)	111, 117, 162
Cac8I	GCNNGC	3 cut(s)	56, 78, 282
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	74, 144
CspAI	ACCGGT	1 cut(s)	236
CviAII	CATG	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	249, 336
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
Eam1104I	CTCTTC	4 cut(s)	73, 103, 139, 201
EarI	CTCTTC	4 cut(s)	73, 103, 139, 201
Ecl136II	GAGCTC	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	172
FaeI	CATG	1 cut(s)	94
FaiI	YATR	5 cut(s)	92, 318, 326, 359, 374
FatI	CATG	1 cut(s)	90
FbaI	TGATCA	1 cut(s)	411
Fnu4HI	GCNGC	6 cut(s)	6, 9, 18, 21, 108, 322
FokI	GGATG	3 cut(s)	98, 104, 149
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	6 cut(s)	6, 9, 18, 21, 108, 322
FspBI	CTAG	2 cut(s)	281, 395
GluI	GCNGC	6 cut(s)	6, 9, 18, 21, 108, 322
HaeIII	GGCC	3 cut(s)	76, 95, 146
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	167, 252, 411
Hpy188III	TCNNGA	2 cut(s)	173, 335
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	17, 54, 80
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 17, 29
HpyF3I	CTNAG	2 cut(s)	249, 336
Hsp92II	CATG	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	411
KspAI	GTTAAC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	302
Lsp1109I	GCAGC	4 cut(s)	29, 32, 94, 333
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	2 cut(s)	281, 395
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	8 cut(s)	60, 90, 126, 206, 209, 212, 215, 218
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	1 cut(s)	211
MnlI	CCTC	5 cut(s)	53, 56, 76, 106, 189
MseI	TTAA	1 cut(s)	225
MspI	CCGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	14, 17, 29
NdeII	GATC	1 cut(s)	411
NheI	GCTAGC	1 cut(s)	280
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	289
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	6 cut(s)	7, 10, 19, 22, 109, 323
Psp124BI	GAGCTC	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	2 cut(s)	74, 144
PstI	CTGCAG	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	6 cut(s)	6, 9, 18, 21, 108, 322
Sau3AI	GATC	1 cut(s)	411
Sau96I	GGNCC	2 cut(s)	74, 144
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	7 cut(s)	25, 109, 172, 279, 286, 307, 400
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	2 cut(s)	5, 8
SspMI	CTAG	2 cut(s)	281, 395
SstI	GAGCTC	1 cut(s)	172
TasI	AATT	1 cut(s)	211
TauI	GCSGC	2 cut(s)	8, 11
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TseI	GCWGC	4 cut(s)	17, 20, 107, 321
TspDTI	ATGAA	1 cut(s)	79
XapI	RAATTY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XspI	CTAG	2 cut(s)	281, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.