Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Reverse (-)

6429534 .. 6430517

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGATCCGTCGGAGTATTTTGCCGGCGGCAATCCTTCCGATCAACAGAACCAGAAGCGGCAGCTTCAGATCTGTGGTCCTCGTCCTTCACCTCTTAGTGTTCACAAAGACTCTCACAAAATCAAGAAACCTCCAAAACACCCTGCGCCGCCGCCAAATCGTGACCAACCGCCGCCGTATATTCCTAGAGAGCCGGTGGTTATCTACGCCGTATCCCCCAAGGTTGTACACGCAACCGCGTCTGAGTTCATGAACGTAGTCCAGCGACTCACAGGGATCTCCTCTGGTGTTTTCCTCGAATCTGGCGGCGGTGGAGATGTTTCACCGGCGGCGAGGCTAGCGTCCACGGAAAATGCTAGTCCAAGAGGAGGAAAAGAACCGGCTGCGAGAGATGAGACGGTGGAAATCAACACGGCTATGGAAGAAGCAGCTGAATTTGGTGGTTATGCTCCGGGAATACTCTCGCCATCTCCGGCCTTGTTGCCAACAGCTTCTACCGGGATATTCTCTCCGATGTATCATCAAGGTGGGATGTTTTCGCCGGCTATACCACTGGGATTATTCTCGCCGGCGGGATTTATGAGCCCGTTTCGAAGTCCTGGCTTTACTAGTTTGGTAGCTTCACCAACTTTTGCTGATTTCTTTAGTCATATTTGGGATCAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0008150 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

222

Amino Acids

23.58

Weight (kDa)

6.06

Isoelectric Point (pI)

76.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	71 - 95	1.8e-11	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	239
AclWI	GGATC	3 cut(s)	12, 284, 666
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	368
AhlI	ACTAGT	1 cut(s)	608
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	4 cut(s)	64, 431, 491, 620
AluI	AGCT	4 cut(s)	64, 431, 491, 620
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	3 cut(s)	12, 284, 666
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	3 cut(s)	61, 383, 428
ApoI	RAATTY	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	77
AsuC2I	CCSGG	2 cut(s)	453, 499
AsuHPI	GGTGA	3 cut(s)	81, 315, 615
AsuII	TTCGAA	1 cut(s)	592
AsuNHI	GCTAGC	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	587
BbvI	GCAGC	3 cut(s)	73, 370, 440
BccI	CCATC	1 cut(s)	475
BceAI	ACGGC	3 cut(s)	160, 194, 429
BciT130I	CCWGG	1 cut(s)	600
BciVI	GTATCC	1 cut(s)	223
BcnI	CCSGG	2 cut(s)	453, 499
BcoDI	GTCTC	1 cut(s)	389
BcuI	ACTAGT	1 cut(s)	608
BfaI	CTAG	4 cut(s)	186, 338, 357, 609
BfuI	GTATCC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	69
Bme1390I	CCNGG	3 cut(s)	453, 499, 600
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	453, 499, 600
BmrI	ACTGGG	1 cut(s)	563
BmtI	GCTAGC	1 cut(s)	341
BmuI	ACTGGG	1 cut(s)	563
Bpu14I	TTCGAA	1 cut(s)	592
BpuMI	CCSGG	2 cut(s)	453, 499
BsaJI	CCNNGG	2 cut(s)	219, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	6 cut(s)	23, 193, 325, 379, 541, 568
Bse1I	ACTGG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	2 cut(s)	219, 345
BseGI	GGATG	1 cut(s)	537
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	558
BseRI	GAGGAG	2 cut(s)	271, 381
BseXI	GCAGC	3 cut(s)	73, 370, 440
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	476
BsiSI	CCGG	9 cut(s)	24, 194, 326, 380, 452, 473, 498, 542, 569
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	389
BsmBI	CGTCTC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	476
Bsp119I	TTCGAA	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	587
Bsp1407I	TGTACA	1 cut(s)	226
Bsp143I	GATC	5 cut(s)	4, 40, 69, 276, 658
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	341
BspPI	GGATC	3 cut(s)	12, 284, 666
BspT104I	TTCGAA	1 cut(s)	592
BsrFI	RCCGGY	6 cut(s)	23, 193, 325, 379, 541, 568
BsrGI	TGTACA	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	558
BssAI	RCCGGY	6 cut(s)	23, 193, 325, 379, 541, 568
BssECI	CCNNGG	2 cut(s)	219, 345
BssMI	GATC	5 cut(s)	4, 40, 69, 276, 658
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	400
BstAUI	TGTACA	1 cut(s)	226
BstBI	TTCGAA	1 cut(s)	592
BstC8I	GCNNGC	4 cut(s)	25, 339, 543, 570
BstDEI	CTNAG	2 cut(s)	95, 243
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	537
BstFNI	CGCG	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	5 cut(s)	7, 43, 72, 279, 661
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	5 cut(s)	4, 40, 69, 276, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	3 cut(s)	451, 497, 598
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	3 cut(s)	73, 370, 440
BstX2I	RGATCY	3 cut(s)	4, 69, 276
BstYI	RGATCY	3 cut(s)	4, 69, 276
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	476
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	537
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	4 cut(s)	25, 339, 543, 570
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	148
Cfr10I	RCCGGY	6 cut(s)	23, 193, 325, 379, 541, 568
Cfr13I	GGNCC	1 cut(s)	77
CseI	GACGC	2 cut(s)	228, 330
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	1 cut(s)	250
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	2 cut(s)	95, 243
DpnI	GATC	5 cut(s)	6, 42, 71, 278, 660
DpnII	GATC	5 cut(s)	4, 40, 69, 276, 658
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	587
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	1 cut(s)	253
FaiI	YATR	7 cut(s)	180, 251, 419, 447, 548, 581, 651
FatI	CATG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	565
FokI	GGATG	1 cut(s)	544
FriOI	GRGCYC	1 cut(s)	587
FspBI	CTAG	4 cut(s)	186, 338, 357, 609
GlaI	GCGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	9 cut(s)	24, 194, 326, 380, 452, 473, 498, 542, 569
HgaI	GACGC	2 cut(s)	228, 330
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HinfI	GANTC	3 cut(s)	110, 267, 299
HpaII	CCGG	9 cut(s)	24, 194, 326, 380, 452, 473, 498, 542, 569
HphI	GGTGA	3 cut(s)	81, 315, 615
Hpy166II	GTNNAC	3 cut(s)	103, 229, 345
Hpy188I	TCNGA	5 cut(s)	13, 40, 69, 244, 513
Hpy188III	TCNNGA	4 cut(s)	124, 161, 250, 662
Hpy8I	GTNNAC	3 cut(s)	103, 229, 345
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	45, 96
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	95, 243
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	1 cut(s)	146
KroI	GCCGGC	3 cut(s)	23, 541, 568
KroNI	GCCGGC	3 cut(s)	25, 543, 570
Kzo9I	GATC	5 cut(s)	4, 40, 69, 276, 658
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	3 cut(s)	73, 370, 440
MaeI	CTAG	4 cut(s)	186, 338, 357, 609
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	5 cut(s)	6, 42, 71, 278, 660
MboI	GATC	5 cut(s)	4, 40, 69, 276, 658
MboII	GAAGA	1 cut(s)	434
MflI	RGATCY	3 cut(s)	4, 69, 276
MhlI	GDGCHC	1 cut(s)	587
MluCI	AATT	1 cut(s)	434
MlyI	GAGTC	2 cut(s)	104, 261
MnlI	CCTC	8 cut(s)	90, 102, 141, 292, 305, 327, 359, 362
MreI	CGCCGGCG	1 cut(s)	568
MroNI	GCCGGC	3 cut(s)	23, 541, 568
MslI	CAYNNNNRTG	2 cut(s)	416, 525
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	9 cut(s)	24, 194, 326, 380, 452, 473, 498, 542, 569
MspR9I	CCNGG	3 cut(s)	453, 499, 600
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	338
NaeI	GCCGGC	3 cut(s)	25, 543, 570
NciI	CCSGG	2 cut(s)	453, 499
NdeII	GATC	5 cut(s)	4, 40, 69, 276, 658
NgoMIV	GCCGGC	3 cut(s)	23, 541, 568
NheI	GCTAGC	1 cut(s)	337
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	161
NspV	TTCGAA	1 cut(s)	592
PagI	TCATGA	1 cut(s)	249
PdiI	GCCGGC	3 cut(s)	25, 543, 570
PfeI	GAWTC	1 cut(s)	299
PfoI	TCCNGGA	1 cut(s)	451
PleI	GAGTC	2 cut(s)	104, 261
PpsI	GAGTC	2 cut(s)	104, 261
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	77
PsuI	RGATCY	3 cut(s)	4, 69, 276
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
RseI	CAYNNNNRTG	2 cut(s)	416, 525
Sau3AI	GATC	5 cut(s)	4, 40, 69, 276, 658
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	2 cut(s)	104, 261
ScrFI	CCNGG	3 cut(s)	453, 499, 600
SduI	GDGCHC	1 cut(s)	587
SetI	ASST	9 cut(s)	66, 94, 133, 225, 258, 433, 493, 529, 622
SfuI	TTCGAA	1 cut(s)	592
SgrAI	CRCCGGYG	2 cut(s)	325, 568
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	2 cut(s)	416, 525
SpeI	ACTAGT	1 cut(s)	608
Sse9I	AATT	1 cut(s)	434
SspMI	CTAG	4 cut(s)	186, 338, 357, 609
StyD4I	CCNGG	3 cut(s)	451, 497, 598
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	297, 592
TasI	AATT	1 cut(s)	434
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	7 cut(s)	30, 61, 151, 154, 175, 309, 332
TfiI	GAWTC	1 cut(s)	299
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	3 cut(s)	61, 383, 428
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	238, 266
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	1 cut(s)	558
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	434
XspI	CTAG	4 cut(s)	186, 338, 357, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.