Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Reverse (-)

25132961 .. 25133659

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g28840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAACCCAGCAAGGCCTCCTCCAGCACCCAAAAAGGAGGTACAACTCCAAGGTCCACGCCCTTCCCCTCTCAAAGTCAACAAAGACTCCATCAAGATCAAGAAGCCACCGCCGCACCCCCACCCGCATCCAGCATCCACCCAGCATCGACCTCCAGCTCCAGCTCCACAGCCGGTGGTGATCTACTCAGTGTCTCCCAAGGTCATCCACACCACTGAAAACGAGTTCATGTCCTTGATCCAACGCCTAACCGGCCCTTCCACCCCTTCGCCCTCCCCCTCCCCCGACGGCCTCTCGCCGGCTGCAAGACTCGCCTCCGTACACAAAACAAGCCCTAATTCAACCTCAGGCCACAACAAGCCCGTGACCACCACCACTAGTATCAGTACTAGCAGTGATGACGACTTCATGGCAAGTATTTTCAATATTCCTGAAGATCAAGGAGGCGGCGGCGGCAGCGGAGGGTCAGTGCAACTTGATGAAATGGGTCAGTTTCCGGGAATATTGTCTGCGCCGCCAGCGTCTCTGCCGGCGGTAACAAGTGAGTTCTTCTCACAGCATCATCAGCATGACGTCATAAGCAGCCCAATGTTGAACAGTTGGATGGGGATGGCTTTTAGCCCTGGTCCGTCTTCGGCTATGATTTCTCCCAGTCCTTGCTCATGGGACCTCTTTAACAATTTCTTGCACAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0008150 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

233

Amino Acids

24.58

Weight (kDa)

7.2

Isoelectric Point (pI)

73.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	64 - 89	1.6e-07	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	576
AciI	CCGC	9 cut(s)	110, 113, 125, 447, 450, 453, 459, 515, 533
AclWI	GGATC	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	573
AfaI	GTAC	3 cut(s)	42, 321, 388
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	3 cut(s)	342, 424, 595
AhlI	ACTAGT	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	622
AluBI	AGCT	2 cut(s)	158, 164
AluI	AGCT	2 cut(s)	158, 164
Alw26I	GTCTC	2 cut(s)	198, 528
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	4 cut(s)	14, 253, 289, 349
ApeKI	GCWGC	3 cut(s)	302, 456, 582
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	4 cut(s)	53, 254, 626, 667
AsuC2I	CCSGG	1 cut(s)	498
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	3 cut(s)	53, 626, 667
AxyI	CCTNAGG	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	624
BbvI	GCAGC	3 cut(s)	289, 468, 594
BccI	CCATC	3 cut(s)	98, 598, 604
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	624
BcnI	CCSGG	1 cut(s)	498
BcoDI	GTCTC	2 cut(s)	198, 528
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	2 cut(s)	378, 390
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	8 cut(s)	113, 303, 448, 451, 454, 457, 515, 583
BlsI	GCNGC	8 cut(s)	114, 304, 449, 452, 455, 458, 516, 584
BmcAI	AGTACT	1 cut(s)	388
Bme1390I	CCNGG	2 cut(s)	498, 624
Bme18I	GGWCC	3 cut(s)	53, 626, 667
BmgT120I	GGNCC	4 cut(s)	53, 254, 626, 667
BmiI	GGNNCC	1 cut(s)	668
BmrFI	CCNGG	2 cut(s)	498, 624
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	4 cut(s)	136, 143, 154, 568
BmuI	ACTGGG	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	624
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpmI	CTGGAG	3 cut(s)	6, 138, 144
BpuMI	CCSGG	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	573
BsaJI	CCNNGG	3 cut(s)	49, 198, 622
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 453, 483
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	4 cut(s)	172, 251, 298, 529
Bse1I	ACTGG	1 cut(s)	651
Bse21I	CCTNAGG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	3 cut(s)	49, 198, 622
BseGI	GGATG	5 cut(s)	127, 134, 204, 609, 615
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	2 cut(s)	201, 360
BseNI	ACTGG	1 cut(s)	651
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	289, 468, 594
BseYI	CCCAGC	2 cut(s)	7, 141
BshFI	GGCC	4 cut(s)	16, 255, 291, 351
BsiSI	CCGG	5 cut(s)	173, 252, 299, 497, 530
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	2 cut(s)	198, 528
BsmBI	CGTCTC	1 cut(s)	528
BsmFI	GGGAC	1 cut(s)	680
BsnI	GGCC	4 cut(s)	16, 255, 291, 351
Bsp143I	GATC	4 cut(s)	96, 180, 237, 436
BspACI	CCGC	9 cut(s)	110, 113, 125, 447, 450, 453, 459, 515, 533
BspANI	GGCC	4 cut(s)	16, 255, 291, 351
BspCNI	CTCAG	2 cut(s)	200, 359
BspLI	GGNNCC	1 cut(s)	668
BspPI	GGATC	1 cut(s)	232
BsrFI	RCCGGY	4 cut(s)	172, 251, 298, 529
BsrI	ACTGG	1 cut(s)	651
BssAI	RCCGGY	4 cut(s)	172, 251, 298, 529
BssECI	CCNNGG	3 cut(s)	49, 198, 622
BssMI	GATC	4 cut(s)	96, 180, 237, 436
BssNI	GRCGYC	1 cut(s)	573
BssT1I	CCWWGG	2 cut(s)	49, 198
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	1 cut(s)	599
BstACI	GRCGYC	1 cut(s)	573
BstC8I	GCNNGC	3 cut(s)	300, 519, 531
BstDEI	CTNAG	2 cut(s)	187, 346
BstF5I	GGATG	5 cut(s)	127, 134, 204, 609, 615
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	4 cut(s)	99, 183, 240, 439
BstMAI	GTCTC	2 cut(s)	198, 528
BstMBI	GATC	4 cut(s)	96, 180, 237, 436
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 252, 311, 453, 456, 518, 565
BstNI	CCWGG	1 cut(s)	624
BstSCI	CCNGG	2 cut(s)	496, 622
BstV1I	GCAGC	3 cut(s)	289, 468, 594
BstV2I	GAAGAC	1 cut(s)	624
Bsu36I	CCTNAGG	1 cut(s)	346
BsuRI	GGCC	4 cut(s)	16, 255, 291, 351
BtsCI	GGATG	5 cut(s)	127, 134, 204, 609, 615
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	4 cut(s)	195, 213, 400, 474
Cac8I	GCNNGC	3 cut(s)	300, 519, 531
CfoI	GCGC	1 cut(s)	514
Cfr10I	RCCGGY	4 cut(s)	172, 251, 298, 529
Cfr13I	GGNCC	4 cut(s)	53, 254, 626, 667
CseI	GACGC	1 cut(s)	510
Csp6I	GTAC	3 cut(s)	41, 320, 387
CviAII	CATG	4 cut(s)	229, 409, 569, 663
CviQI	GTAC	3 cut(s)	41, 320, 387
DdeI	CTNAG	2 cut(s)	187, 346
DpnI	GATC	4 cut(s)	98, 182, 239, 438
DpnII	GATC	4 cut(s)	96, 180, 237, 436
Eco130I	CCWWGG	2 cut(s)	49, 198
Eco147I	AGGCCT	1 cut(s)	16
Eco47I	GGWCC	3 cut(s)	53, 626, 667
Eco57I	CTGAAG	1 cut(s)	453
Eco81I	CCTNAGG	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	622
EcoT14I	CCWWGG	2 cut(s)	49, 198
ErhI	CCWWGG	2 cut(s)	49, 198
Esp3I	CGTCTC	1 cut(s)	528
FaeI	CATG	4 cut(s)	232, 412, 572, 666
FaiI	YATR	6 cut(s)	230, 410, 570, 578, 641, 664
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	4 cut(s)	228, 408, 568, 662
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	8 cut(s)	113, 303, 448, 451, 454, 457, 515, 583
FokI	GGATG	5 cut(s)	114, 121, 191, 616, 622
Fsp4HI	GCNGC	8 cut(s)	113, 303, 448, 451, 454, 457, 515, 583
FspBI	CTAG	2 cut(s)	378, 390
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	8 cut(s)	113, 303, 448, 451, 454, 457, 515, 583
GsaI	CCCAGC	2 cut(s)	11, 145
GsuI	CTGGAG	3 cut(s)	6, 138, 144
HaeIII	GGCC	4 cut(s)	16, 255, 291, 351
HapII	CCGG	5 cut(s)	173, 252, 299, 497, 530
HgaI	GACGC	1 cut(s)	510
HhaI	GCGC	1 cut(s)	514
Hin1I	GRCGYC	1 cut(s)	573
Hin1II	CATG	4 cut(s)	232, 412, 572, 666
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	86, 309
HpaII	CCGG	5 cut(s)	173, 252, 299, 497, 530
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	56, 79, 322
Hpy188III	TCNNGA	3 cut(s)	94, 100, 431
Hpy8I	GTNNAC	3 cut(s)	56, 79, 322
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	3 cut(s)	72, 267, 276
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	3 cut(s)	305, 472, 688
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 252, 311, 453, 456, 518, 565
HpyF3I	CTNAG	2 cut(s)	187, 346
HpySE526I	ACGT	1 cut(s)	573
Hsp92I	GRCGYC	1 cut(s)	573
Hsp92II	CATG	4 cut(s)	232, 412, 572, 666
HspAI	GCGC	1 cut(s)	512
KroI	GCCGGC	2 cut(s)	298, 529
KroNI	GCCGGC	2 cut(s)	300, 531
Kzo9I	GATC	4 cut(s)	96, 180, 237, 436
LmnI	GCTCC	2 cut(s)	163, 169
Lsp1109I	GCAGC	3 cut(s)	289, 468, 594
LweI	GCATC	4 cut(s)	136, 143, 154, 568
MaeI	CTAG	2 cut(s)	378, 390
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	2 cut(s)	364, 535
MalI	GATC	4 cut(s)	98, 182, 239, 438
MboI	GATC	4 cut(s)	96, 180, 237, 436
MboII	GAAGA	3 cut(s)	446, 541, 624
MluCI	AATT	2 cut(s)	337, 679
MlyI	GAGTC	2 cut(s)	80, 303
MmeI	TCCRAC	2 cut(s)	265, 581
MroNI	GCCGGC	2 cut(s)	298, 529
MseI	TTAA	2 cut(s)	675, 697
MslI	CAYNNNNRTG	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	459
MspI	CCGG	5 cut(s)	173, 252, 299, 497, 530
MspR9I	CCNGG	2 cut(s)	498, 624
MvaI	CCWGG	1 cut(s)	624
MwoI	GCNNNNNNNGC	7 cut(s)	112, 252, 311, 453, 456, 518, 565
NaeI	GCCGGC	2 cut(s)	300, 531
NciI	CCSGG	1 cut(s)	498
NdeII	GATC	4 cut(s)	96, 180, 237, 436
NgoMIV	GCCGGC	2 cut(s)	298, 529
NlaIII	CATG	4 cut(s)	232, 412, 572, 666
NlaIV	GGNNCC	1 cut(s)	668
NmuCI	GTSAC	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	16
PdiI	GCCGGC	2 cut(s)	300, 531
PfoI	TCCNGGA	1 cut(s)	496
PkrI	GCNGC	8 cut(s)	114, 304, 449, 452, 455, 458, 516, 584
PleI	GAGTC	2 cut(s)	80, 303
PpsI	GAGTC	2 cut(s)	80, 303
PpuMI	RGGWCCY	1 cut(s)	667
Psp5II	RGGWCCY	1 cut(s)	667
Psp6I	CCWGG	1 cut(s)	622
PspFI	CCCAGC	2 cut(s)	7, 141
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	1 cut(s)	668
PspPI	GGNCC	4 cut(s)	53, 254, 626, 667
PspPPI	RGGWCCY	1 cut(s)	667
RsaI	GTAC	3 cut(s)	42, 321, 388
RsaNI	GTAC	3 cut(s)	41, 320, 387
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	2 cut(s)	675, 697
SatI	GCNGC	8 cut(s)	113, 303, 448, 451, 454, 457, 515, 583
Sau3AI	GATC	4 cut(s)	96, 180, 237, 436
Sau96I	GGNCC	4 cut(s)	53, 254, 626, 667
ScaI	AGTACT	1 cut(s)	388
SchI	GAGTC	2 cut(s)	80, 303
ScrFI	CCNGG	2 cut(s)	498, 624
SetI	ASST	9 cut(s)	42, 55, 154, 160, 166, 204, 347, 576, 672
SfaNI	GCATC	4 cut(s)	136, 143, 154, 568
SinI	GGWCC	3 cut(s)	53, 626, 667
SmiMI	CAYNNNNRTG	1 cut(s)	567
SpeI	ACTAGT	1 cut(s)	377
Sse9I	AATT	2 cut(s)	337, 679
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	9 cut(s)	110, 113, 125, 447, 450, 453, 459, 515, 533
SspI	AATATT	2 cut(s)	427, 504
SspMI	CTAG	2 cut(s)	378, 390
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	2 cut(s)	496, 622
StyI	CCWWGG	2 cut(s)	49, 198
TaaI	ACNGT	1 cut(s)	599
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	1 cut(s)	148
TasI	AATT	2 cut(s)	337, 679
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	5 cut(s)	115, 450, 453, 456, 517
Tru1I	TTAA	2 cut(s)	675, 697
Tru9I	TTAA	2 cut(s)	675, 697
TscAI	CASTG	4 cut(s)	195, 220, 400, 474
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	3 cut(s)	302, 456, 582
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	4 cut(s)	17, 217, 397, 495
TspGWI	ACGGA	2 cut(s)	307, 618
TspRI	CASTG	4 cut(s)	195, 220, 400, 474
VpaK11BI	GGWCC	3 cut(s)	53, 626, 667
XspI	CTAG	2 cut(s)	378, 390
ZraI	GACGTC	1 cut(s)	574
ZrmI	AGTACT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.