Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8303727.1

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 347

Gene Structure 346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8303727.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 346 bp

atgaacccgccaccgcagcggcccaccaccccaaaaaaggagctccaactccaaggcccccgcccagcccctctcaaagtcagcaaagactccgtcaaaatcaagaagccgcctccgcacccccacctccgccaaaacccacctcaacaacagttccagccgccgcagcagcaccaggagccggtggtcatctacaccgtctcgcccaaagtgattcacacctccgtcaacgagttcatgtccctcgtccaacgcctcaccggcccttcctcctctccccccggcgacctctcccccgccgcccgcctcgcctccattgagaaaaccagcccctcttccgatcaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0008150 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

115

Amino Acids

12.67

Weight (kDa)

10.16

Isoelectric Point (pI)

81.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	37, 181
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	205
AoxI	GGCC	3 cut(s)	20, 55, 262
ApeKI	GCWGC	3 cut(s)	16, 166, 169
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AspS9I	GGNCC	3 cut(s)	21, 56, 263
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	28, 178, 181
BciT130I	CCWGG	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	205
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	8 cut(s)	17, 20, 110, 161, 164, 167, 170, 300
BlsI	GCNGC	8 cut(s)	18, 21, 111, 162, 165, 168, 171, 301
Bme1390I	CCNGG	2 cut(s)	176, 282
BmgT120I	GGNCC	3 cut(s)	21, 56, 263
BmiI	GGNNCC	2 cut(s)	58, 180
BmrFI	CCNGG	2 cut(s)	176, 282
BpuMI	CCSGG	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	52, 280
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 181
Bse118I	RCCGGY	2 cut(s)	181, 260
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	52, 280
BseLI	CCNNNNNNNGG	2 cut(s)	37, 181
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	3 cut(s)	28, 178, 181
BseYI	CCCAGC	1 cut(s)	64
BshFI	GGCC	3 cut(s)	22, 57, 264
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	3 cut(s)	182, 261, 282
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	37, 181
BsmAI	GTCTC	1 cut(s)	205
BsmBI	CGTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	22, 57, 264
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	340
BspANI	GGCC	3 cut(s)	22, 57, 264
BspLI	GGNNCC	2 cut(s)	58, 180
BsrFI	RCCGGY	2 cut(s)	181, 260
BssAI	RCCGGY	2 cut(s)	181, 260
BssECI	CCNNGG	2 cut(s)	52, 280
BssMI	GATC	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	153, 199
Bst6I	CTCTTC	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	304
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	7 cut(s)	16, 115, 166, 169, 178, 261, 308
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	174, 280
BstV1I	GCAGC	3 cut(s)	28, 178, 181
BsuRI	GGCC	3 cut(s)	22, 57, 264
Cac8I	GCNNGC	1 cut(s)	304
Cfr10I	RCCGGY	2 cut(s)	181, 260
Cfr13I	GGNCC	3 cut(s)	21, 56, 263
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	9 cut(s)	22, 43, 57, 68, 109, 160, 181, 264, 330
CviKI_1	RGCY	9 cut(s)	22, 43, 57, 68, 109, 160, 181, 264, 330
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
EciI	GGCGGA	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	1 cut(s)	241
FaiI	YATR	1 cut(s)	239
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	1 cut(s)	237
FauI	CCCGC	4 cut(s)	15, 68, 304, 311
Fnu4HI	GCNGC	8 cut(s)	17, 20, 110, 161, 164, 167, 170, 300
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	8 cut(s)	17, 20, 110, 161, 164, 167, 170, 300
GluI	GCNGC	8 cut(s)	17, 20, 110, 161, 164, 167, 170, 300
GsaI	CCCAGC	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	22, 57, 264
HapII	CCGG	3 cut(s)	182, 261, 282
Hin1II	CATG	1 cut(s)	241
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	89, 214
HpaII	CCGG	3 cut(s)	182, 261, 282
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	340, 345
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	2 cut(s)	153, 199
HpyF10VI	GCNNNNNNNGC	7 cut(s)	16, 115, 166, 169, 178, 261, 308
Hsp92II	CATG	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	3 cut(s)	40, 48, 178
LpnPI	CCDG	8 cut(s)	78, 161, 170, 188, 195, 274, 295, 340
Lsp1109I	GCAGC	3 cut(s)	28, 178, 181
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	1 cut(s)	327
MhlI	GDGCHC	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	70, 274
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	3 cut(s)	182, 261, 282
MspR9I	CCNGG	2 cut(s)	176, 282
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	7 cut(s)	16, 115, 166, 169, 178, 261, 308
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	2 cut(s)	58, 180
PfeI	GAWTC	1 cut(s)	214
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	8 cut(s)	18, 21, 111, 162, 165, 168, 171, 301
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	58, 180
PspPI	GGNCC	3 cut(s)	21, 56, 263
PsyI	GACNNNGTC	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	45
SatI	GCNGC	8 cut(s)	17, 20, 110, 161, 164, 167, 170, 300
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	3 cut(s)	21, 56, 263
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	2 cut(s)	176, 282
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	5 cut(s)	45, 129, 145, 224, 291
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	174, 280
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	153, 199
TauI	GCSGC	5 cut(s)	22, 112, 163, 166, 302
TfiI	GAWTC	1 cut(s)	214
TseI	GCWGC	3 cut(s)	16, 166, 169
TspDTI	ATGAA	2 cut(s)	17, 226
TspGWI	ACGGA	2 cut(s)	82, 214
Tth111I	GACNNNGTC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.