Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8026628.1

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 337

Gene Structure 337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8026628.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 337 bp

cgatcagaagcacttcccgcccgtaaataccaccacagccaccgccgccattgacgacgactttatggatagtattctggagggtattgacttgatgggtcagttcccggggattctgtcgccggcgccggccaccatgccgccgatcccagctgggttcttctccccggccgccgaagacccgcaaaacttcaactggcaaggcgccaacaacatcaacagcggcttcaatagtttcatgccgagcccttcctcgaattcggctctgttttcggctcctctggtttctccgagcccttcttcgtgggacctcttcaacaatttcttggacttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0008150 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

111

Amino Acids

11.87

Weight (kDa)

4.05

Isoelectric Point (pI)

69.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	125, 204
AciI	CCGC	7 cut(s)	18, 43, 46, 141, 172, 183, 223
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	2 cut(s)	130, 169
AcsI	RAATTY	1 cut(s)	257
AcyI	GRCGYC	2 cut(s)	126, 205
AgsI	TTSAA	3 cut(s)	194, 230, 317
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
AlwI	GGATC	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	130, 169
ApoI	RAATTY	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	128, 207
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	3 cut(s)	108, 109, 168
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	308
BanI	GGYRCC	2 cut(s)	125, 204
BanII	GRGCYC	2 cut(s)	249, 297
BbsI	GAAGAC	1 cut(s)	184
BccI	CCATC	1 cut(s)	89
BcnI	CCSGG	3 cut(s)	108, 109, 168
BfaI	CTAG	1 cut(s)	335
BfoI	RGCGCY	2 cut(s)	129, 208
BisI	GCNGC	4 cut(s)	46, 141, 172, 224
BlsI	GCNGC	4 cut(s)	47, 142, 173, 225
Bme1390I	CCNGG	3 cut(s)	108, 109, 168
Bme18I	GGWCC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	4 cut(s)	127, 206, 277, 309
BmrFI	CCNGG	3 cut(s)	108, 109, 168
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	99
BpuMI	CCSGG	3 cut(s)	108, 109, 168
BsaHI	GRCGYC	2 cut(s)	126, 205
BsaJI	CCNNGG	3 cut(s)	107, 108, 166
Bse118I	RCCGGY	2 cut(s)	122, 128
Bse1I	ACTGG	1 cut(s)	201
BseDI	CCNNGG	3 cut(s)	107, 108, 166
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	268
BseX3I	CGGCCG	1 cut(s)	169
BseYI	CCCAGC	2 cut(s)	149, 153
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	132, 171
BshNI	GGYRCC	2 cut(s)	125, 204
BsiEI	CGRYCG	1 cut(s)	172
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	4 cut(s)	108, 123, 129, 168
BslFI	GGGAC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	132, 171
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	249, 297
Bsp143I	GATC	2 cut(s)	2, 145
BspACI	CCGC	7 cut(s)	18, 43, 46, 141, 172, 183, 223
BspANI	GGCC	2 cut(s)	132, 171
BspLI	GGNNCC	4 cut(s)	127, 206, 277, 309
BspPI	GGATC	1 cut(s)	140
BspT107I	GGYRCC	2 cut(s)	125, 204
BsrFI	RCCGGY	2 cut(s)	122, 128
BsrI	ACTGG	1 cut(s)	201
BssAI	RCCGGY	2 cut(s)	122, 128
BssECI	CCNNGG	3 cut(s)	107, 108, 166
BssMI	GATC	2 cut(s)	2, 145
BssNI	GRCGYC	2 cut(s)	126, 205
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	2 cut(s)	126, 205
BstC8I	GCNNGC	2 cut(s)	124, 130
BstH2I	RGCGCY	2 cut(s)	129, 208
BstHHI	GCGC	2 cut(s)	128, 207
BstKTI	GATC	2 cut(s)	5, 148
BstMBI	GATC	2 cut(s)	2, 145
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 45
BstSCI	CCNGG	3 cut(s)	106, 107, 166
BstV2I	GAAGAC	1 cut(s)	184
BstZI	CGGCCG	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	132, 171
Cac8I	GCNNGC	2 cut(s)	124, 130
CfoI	GCGC	2 cut(s)	128, 207
Cfr10I	RCCGGY	2 cut(s)	122, 128
Cfr13I	GGNCC	1 cut(s)	308
Cfr9I	CCCGGG	1 cut(s)	107
CviAII	CATG	2 cut(s)	137, 239
CviJI	RGCY	9 cut(s)	39, 132, 153, 171, 226, 247, 264, 276, 295
CviKI_1	RGCY	9 cut(s)	39, 132, 153, 171, 226, 247, 264, 276, 295
DinI	GGCGCC	2 cut(s)	127, 206
DpnI	GATC	2 cut(s)	4, 147
DpnII	GATC	2 cut(s)	2, 145
EaeI	YGGCCR	2 cut(s)	130, 169
EagI	CGGCCG	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
EclXI	CGGCCG	1 cut(s)	169
Eco24I	GRGCYC	2 cut(s)	249, 297
Eco47I	GGWCC	1 cut(s)	308
Eco52I	CGGCCG	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	107
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	257
EcoT38I	GRGCYC	2 cut(s)	249, 297
EgeI	GGCGCC	2 cut(s)	127, 206
EheI	GGCGCC	2 cut(s)	127, 206
FaeI	CATG	2 cut(s)	140, 242
FaiI	YATR	3 cut(s)	66, 138, 240
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	2 cut(s)	136, 238
FauI	CCCGC	2 cut(s)	25, 190
Fnu4HI	GCNGC	4 cut(s)	46, 141, 172, 224
FriOI	GRGCYC	2 cut(s)	249, 297
Fsp4HI	GCNGC	4 cut(s)	46, 141, 172, 224
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	2 cut(s)	127, 206
GluI	GCNGC	4 cut(s)	46, 141, 172, 224
GsaI	CCCAGC	2 cut(s)	153, 157
GsuI	CTGGAG	1 cut(s)	99
HaeII	RGCGCY	2 cut(s)	129, 208
HaeIII	GGCC	2 cut(s)	132, 171
HapII	CCGG	4 cut(s)	108, 123, 129, 168
HhaI	GCGC	2 cut(s)	128, 207
Hin1I	GRCGYC	2 cut(s)	126, 205
Hin1II	CATG	2 cut(s)	140, 242
Hin6I	GCGC	2 cut(s)	126, 205
HinP1I	GCGC	2 cut(s)	126, 205
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	4 cut(s)	108, 123, 129, 168
Hpy188I	TCNGA	2 cut(s)	7, 292
Hpy188III	TCNNGA	1 cut(s)	78
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	2 cut(s)	259, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 45
Hsp92I	GRCGYC	2 cut(s)	126, 205
Hsp92II	CATG	2 cut(s)	140, 242
HspAI	GCGC	2 cut(s)	126, 205
KasI	GGCGCC	2 cut(s)	125, 204
KroI	GCCGGC	2 cut(s)	122, 128
KroNI	GCCGGC	2 cut(s)	124, 130
Kzo9I	GATC	2 cut(s)	2, 145
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	9 cut(s)	63, 121, 136, 139, 142, 163, 181, 182, 267
MaeI	CTAG	1 cut(s)	335
MalI	GATC	2 cut(s)	4, 147
MboI	GATC	2 cut(s)	2, 145
MboII	GAAGA	4 cut(s)	152, 189, 292, 305
MhlI	GDGCHC	2 cut(s)	249, 297
MluCI	AATT	2 cut(s)	257, 320
Mly113I	GGCGCC	2 cut(s)	126, 205
MnlI	CCTC	4 cut(s)	74, 263, 289, 321
MreI	CGCCGGCG	1 cut(s)	122
MroNI	GCCGGC	2 cut(s)	122, 128
MroXI	GAANNNNTTC	1 cut(s)	12
MspA1I	CMGCKG	2 cut(s)	153, 223
MspI	CCGG	4 cut(s)	108, 123, 129, 168
MspR9I	CCNGG	3 cut(s)	108, 109, 168
MwoI	GCNNNNNNNGC	2 cut(s)	17, 45
NaeI	GCCGGC	2 cut(s)	124, 130
NarI	GGCGCC	2 cut(s)	126, 205
NciI	CCSGG	3 cut(s)	108, 109, 168
NdeII	GATC	2 cut(s)	2, 145
NgoMIV	GCCGGC	2 cut(s)	122, 128
NlaIII	CATG	2 cut(s)	140, 242
NlaIV	GGNNCC	4 cut(s)	127, 206, 277, 309
NmeAIII	GCCGAG	1 cut(s)	268
PdiI	GCCGGC	2 cut(s)	124, 130
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	4 cut(s)	47, 142, 173, 225
PluTI	GGCGCC	2 cut(s)	129, 208
PpuMI	RGGWCCY	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	308
PspFI	CCCAGC	2 cut(s)	149, 153
PspN4I	GGNNCC	4 cut(s)	127, 206, 277, 309
PspPI	GGNCC	1 cut(s)	308
PspPPI	RGGWCCY	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	153
SatI	GCNGC	4 cut(s)	46, 141, 172, 224
Sau3AI	GATC	2 cut(s)	2, 145
Sau96I	GGNCC	1 cut(s)	308
ScrFI	CCNGG	3 cut(s)	108, 109, 168
SduI	GDGCHC	2 cut(s)	249, 297
SetI	ASST	2 cut(s)	155, 313
SfoI	GGCGCC	2 cut(s)	127, 206
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	308
SmaI	CCCGGG	1 cut(s)	109
Sse9I	AATT	2 cut(s)	257, 320
SsiI	CCGC	7 cut(s)	18, 43, 46, 141, 172, 183, 223
SspDI	GGCGCC	2 cut(s)	125, 204
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	3 cut(s)	106, 107, 166
TaqI	TCGA	1 cut(s)	255
TasI	AATT	2 cut(s)	257, 320
TauI	GCSGC	4 cut(s)	48, 143, 174, 226
TfiI	GAWTC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	227
TspMI	CCCGGG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	1 cut(s)	257
XmaI	CCCGGG	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.