VQ motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18690 |
| fragaria_vesca | FvH4_1g24040 FvH4_2g14340 |
| malus_domestica | MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1 |
| prunus_persica | Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1 |
| pyrus_communis | pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840 |
| rosa_chinensis | RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681 |
| rosa_laevigata | RLG00000013379 RLG00000018529 |
| rosa_multiflora | Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00123640 Rroxscaffold_7G00192120 |
| rosa_rugosa | Rorug02G0227500 Rorug06G0102900 |
| rosa_samantha | Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700 |
| rosa_wichuraiana | Rw2G022760 Rw6G018640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 383 |
| AccI | GTMKAC | 1 cut(s) | 391 |
| AciI | CCGC | 1 cut(s) | 235 |
| AcuI | CTGAAG | 2 cut(s) | 246, 450 |
| AdeI | CACNNNGTG | 1 cut(s) | 14 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 368 |
| AgsI | TTSAA | 3 cut(s) | 266, 350, 449 |
| AluBI | AGCT | 4 cut(s) | 224, 310, 428, 464 |
| AluI | AGCT | 4 cut(s) | 224, 310, 428, 464 |
| Alw21I | GWGCWC | 1 cut(s) | 211 |
| Alw26I | GTCTC | 1 cut(s) | 436 |
| ApeKI | GCWGC | 2 cut(s) | 119, 425 |
| AseI | ATTAAT | 1 cut(s) | 437 |
| AspLEI | GCGC | 1 cut(s) | 34 |
| BanI | GGYRCC | 1 cut(s) | 383 |
| BauI | CACGAG | 1 cut(s) | 76 |
| Bbv12I | GWGCWC | 1 cut(s) | 211 |
| BbvI | GCAGC | 2 cut(s) | 106, 437 |
| BclI | TGATCA | 1 cut(s) | 330 |
| BcoDI | GTCTC | 1 cut(s) | 436 |
| BfmI | CTRYAG | 2 cut(s) | 120, 388 |
| BisI | GCNGC | 2 cut(s) | 120, 426 |
| BlpI | GCTNAGC | 1 cut(s) | 460 |
| BlsI | GCNGC | 2 cut(s) | 121, 427 |
| BmiI | GGNNCC | 1 cut(s) | 385 |
| BmsI | GCATC | 3 cut(s) | 86, 113, 284 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 460 |
| BpuEI | CTTGAG | 1 cut(s) | 332 |
| BsaAI | YACGTR | 1 cut(s) | 260 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 368 |
| Bse3DI | GCAATG | 3 cut(s) | 93, 511, 522 |
| BseGI | GGATG | 2 cut(s) | 101, 275 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 368 |
| BseMI | GCAATG | 3 cut(s) | 93, 511, 522 |
| BseMII | CTCAG | 1 cut(s) | 474 |
| BseRI | GAGGAG | 2 cut(s) | 41, 329 |
| BseXI | GCAGC | 2 cut(s) | 106, 437 |
| BshNI | GGYRCC | 1 cut(s) | 383 |
| BsiHKAI | GWGCWC | 1 cut(s) | 211 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 368 |
| BsmAI | GTCTC | 1 cut(s) | 436 |
| BsmI | GAATGC | 2 cut(s) | 88, 461 |
| Bsp1286I | GDGCHC | 1 cut(s) | 211 |
| Bsp143I | GATC | 2 cut(s) | 330, 496 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 460 |
| BspACI | CCGC | 1 cut(s) | 235 |
| BspCNI | CTCAG | 1 cut(s) | 473 |
| BspLI | GGNNCC | 1 cut(s) | 385 |
| BspMAI | CTGCAG | 1 cut(s) | 124 |
| BspT107I | GGYRCC | 1 cut(s) | 383 |
| BsrDI | GCAATG | 3 cut(s) | 93, 511, 522 |
| BssMI | GATC | 2 cut(s) | 330, 496 |
| BssSI | CACGAG | 1 cut(s) | 76 |
| Bst2BI | CACGAG | 1 cut(s) | 76 |
| Bst6I | CTCTTC | 1 cut(s) | 146 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 422 |
| BstBAI | YACGTR | 1 cut(s) | 260 |
| BstC8I | GCNNGC | 1 cut(s) | 341 |
| BstDEI | CTNAG | 1 cut(s) | 460 |
| BstF5I | GGATG | 2 cut(s) | 101, 275 |
| BstHHI | GCGC | 1 cut(s) | 34 |
| BstKTI | GATC | 2 cut(s) | 333, 499 |
| BstMAI | GTCTC | 1 cut(s) | 436 |
| BstMBI | GATC | 2 cut(s) | 330, 496 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 125, 221, 307, 413, 422, 431 |
| BstNSI | RCATGY | 1 cut(s) | 343 |
| BstSFI | CTRYAG | 2 cut(s) | 120, 388 |
| BstV1I | GCAGC | 2 cut(s) | 106, 437 |
| BtsCI | GGATG | 2 cut(s) | 101, 275 |
| BtsI | GCAGTG | 1 cut(s) | 198 |
| BtsIMutI | CAGTG | 1 cut(s) | 198 |
| Cac8I | GCNNGC | 1 cut(s) | 341 |
| CfoI | GCGC | 1 cut(s) | 34 |
| CviAII | CATG | 3 cut(s) | 212, 302, 340 |
| CviJI | RGCY | 8 cut(s) | 128, 224, 256, 310, 320, 361, 428, 464 |
| CviKI_1 | RGCY | 8 cut(s) | 128, 224, 256, 310, 320, 361, 428, 464 |
| DdeI | CTNAG | 1 cut(s) | 460 |
| DpnI | GATC | 2 cut(s) | 332, 498 |
| DpnII | GATC | 2 cut(s) | 330, 496 |
| DraIII | CACNNNGTG | 1 cut(s) | 14 |
| Eam1104I | CTCTTC | 1 cut(s) | 146 |
| EarI | CTCTTC | 1 cut(s) | 146 |
| EciI | GGCGGA | 1 cut(s) | 250 |
| Eco57I | CTGAAG | 2 cut(s) | 246, 450 |
| EcoT22I | ATGCAT | 1 cut(s) | 277 |
| FaeI | CATG | 3 cut(s) | 215, 305, 343 |
| FatI | CATG | 3 cut(s) | 211, 301, 339 |
| FauNDI | CATATG | 1 cut(s) | 469 |
| FbaI | TGATCA | 1 cut(s) | 330 |
| FblI | GTMKAC | 1 cut(s) | 391 |
| Fnu4HI | GCNGC | 2 cut(s) | 120, 426 |
| FokI | GGATG | 2 cut(s) | 108, 262 |
| Fsp4HI | GCNGC | 2 cut(s) | 120, 426 |
| GlaI | GCGC | 1 cut(s) | 33 |
| GluI | GCNGC | 2 cut(s) | 120, 426 |
| HhaI | GCGC | 1 cut(s) | 34 |
| Hin1II | CATG | 3 cut(s) | 215, 305, 343 |
| Hin6I | GCGC | 1 cut(s) | 32 |
| HinP1I | GCGC | 1 cut(s) | 32 |
| HinfI | GANTC | 1 cut(s) | 449 |
| Hpy166II | GTNNAC | 2 cut(s) | 286, 392 |
| Hpy188I | TCNGA | 1 cut(s) | 454 |
| Hpy188III | TCNNGA | 1 cut(s) | 9 |
| Hpy8I | GTNNAC | 2 cut(s) | 286, 392 |
| HpyAV | CCTTC | 1 cut(s) | 224 |
| HpyCH4IV | ACGT | 1 cut(s) | 259 |
| HpyCH4V | TGCA | 8 cut(s) | 86, 122, 191, 215, 275, 397, 407, 425 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 125, 221, 307, 413, 422, 431 |
| HpyF3I | CTNAG | 1 cut(s) | 460 |
| HpySE526I | ACGT | 1 cut(s) | 259 |
| Hsp92II | CATG | 3 cut(s) | 215, 305, 343 |
| HspAI | GCGC | 1 cut(s) | 32 |
| Ksp22I | TGATCA | 1 cut(s) | 330 |
| Kzo9I | GATC | 2 cut(s) | 330, 496 |
| LmnI | GCTCC | 2 cut(s) | 371, 469 |
| LpnPI | CCDG | 4 cut(s) | 201, 375, 400, 485 |
| Lsp1109I | GCAGC | 2 cut(s) | 106, 437 |
| LweI | GCATC | 3 cut(s) | 86, 113, 284 |
| MaeII | ACGT | 1 cut(s) | 259 |
| MaeIII | GTNAC | 1 cut(s) | 239 |
| MalI | GATC | 2 cut(s) | 332, 498 |
| MboI | GATC | 2 cut(s) | 330, 496 |
| MboII | GAAGA | 2 cut(s) | 163, 239 |
| MhlI | GDGCHC | 1 cut(s) | 211 |
| MluCI | AATT | 2 cut(s) | 39, 291 |
| MnlI | CCTC | 6 cut(s) | 19, 22, 118, 147, 307, 310 |
| Mph1103I | ATGCAT | 1 cut(s) | 277 |
| MseI | TTAA | 3 cut(s) | 158, 197, 437 |
| MslI | CAYNNNNRTG | 1 cut(s) | 402 |
| MspA1I | CMGCKG | 1 cut(s) | 428 |
| Mva1269I | GAATGC | 2 cut(s) | 88, 461 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 125, 221, 307, 413, 422, 431 |
| NdeI | CATATG | 1 cut(s) | 469 |
| NdeII | GATC | 2 cut(s) | 330, 496 |
| NlaIII | CATG | 3 cut(s) | 215, 305, 343 |
| NlaIV | GGNNCC | 1 cut(s) | 385 |
| NmuCI | GTSAC | 1 cut(s) | 239 |
| NsiI | ATGCAT | 1 cut(s) | 277 |
| NspI | RCATGY | 1 cut(s) | 343 |
| PaeI | GCATGC | 1 cut(s) | 343 |
| PctI | GAATGC | 2 cut(s) | 88, 461 |
| PfeI | GAWTC | 1 cut(s) | 449 |
| PkrI | GCNGC | 2 cut(s) | 121, 427 |
| Ppu21I | YACGTR | 1 cut(s) | 260 |
| PshBI | ATTAAT | 1 cut(s) | 437 |
| PspN4I | GGNNCC | 1 cut(s) | 385 |
| PstI | CTGCAG | 1 cut(s) | 124 |
| PvuII | CAGCTG | 1 cut(s) | 428 |
| RseI | CAYNNNNRTG | 1 cut(s) | 402 |
| SaqAI | TTAA | 3 cut(s) | 158, 197, 437 |
| SatI | GCNGC | 2 cut(s) | 120, 426 |
| Sau3AI | GATC | 2 cut(s) | 330, 496 |
| SduI | GDGCHC | 1 cut(s) | 211 |
| SetI | ASST | 9 cut(s) | 158, 165, 172, 226, 262, 312, 385, 430, 466 |
| SfaNI | GCATC | 3 cut(s) | 86, 113, 284 |
| SfcI | CTRYAG | 2 cut(s) | 120, 388 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 402 |
| SmlI | CTYRAG | 1 cut(s) | 311 |
| SmoI | CTYRAG | 1 cut(s) | 311 |
| SphI | GCATGC | 1 cut(s) | 343 |
| Sse9I | AATT | 2 cut(s) | 39, 291 |
| SsiI | CCGC | 1 cut(s) | 235 |
| TaiI | ACGT | 1 cut(s) | 262 |
| TasI | AATT | 2 cut(s) | 39, 291 |
| TfiI | GAWTC | 1 cut(s) | 449 |
| Tru1I | TTAA | 3 cut(s) | 158, 197, 437 |
| Tru9I | TTAA | 3 cut(s) | 158, 197, 437 |
| TscAI | CASTG | 1 cut(s) | 198 |
| TseFI | GTSAC | 1 cut(s) | 239 |
| TseI | GCWGC | 2 cut(s) | 119, 425 |
| Tsp45I | GTSAC | 1 cut(s) | 239 |
| TspDTI | ATGAA | 2 cut(s) | 68, 164 |
| TspRI | CASTG | 1 cut(s) | 198 |
| VspI | ATTAAT | 1 cut(s) | 437 |
| XceI | RCATGY | 1 cut(s) | 343 |
| XmiI | GTMKAC | 1 cut(s) | 391 |
| Zsp2I | ATGCAT | 1 cut(s) | 277 |