Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Forward (+)

1271923 .. 1272502

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGATTATTCACCAGGAAAATCTCCAAGAAGAGAGCTTCAACTCCAAGGTCCACGTCCAACGCCTCTCAAGATACACAAAGACTCTCACAAGATCAAGAAACCTCCAGTTGCACCACAACCGTCACAACAACCAAACCAGCAGCAGCAGCCCCATCACTACCAGCAGCCACGTCAACCGGTCATAATCTACACGGTGTCCCCGAAGGTCATCCACACAAACCCTAGCGAGTTCATGGATCTTGTCCAACGCCTCACCGGCTTACCACCATCGAATTCATCTACTGCATCTTCTTCCCCGCCTAGTAATAACAATATTAATCCTCCAAATTACGATAACTATAATAATCCTCCAGCTCATGATGATCAAGGGATGAAGAAAGCTAGTACTGCTCAAGATGTTGTGGAAGAAATGGAAATTATGGATGGTGGTGGCAAAGGGGTATGTTTCCAGGGATCTTGTCGCCTGGGCCCGCTTCGCTTACTCCGATTCCTTCAAACTTCTTCTCTCCGCCGGCGGATAGCTTCTTTCATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

180

Amino Acids

20.01

Weight (kDa)

9.73

Isoelectric Point (pI)

83.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	299, 473, 511, 517
AclWI	GGATC	2 cut(s)	246, 463
AcsI	RAATTY	1 cut(s)	274
AfaI	GTAC	1 cut(s)	388
AgeI	ACCGGT	1 cut(s)	178
AgsI	TTSAA	2 cut(s)	41, 497
AjiI	CACGTC	2 cut(s)	56, 173
AjnI	CCWGG	3 cut(s)	13, 450, 465
AluBI	AGCT	4 cut(s)	37, 356, 383, 524
AluI	AGCT	4 cut(s)	37, 356, 383, 524
AlwI	GGATC	2 cut(s)	246, 463
AoxI	GGCC	1 cut(s)	469
ApaI	GGGCCC	1 cut(s)	473
ApeKI	GCWGC	4 cut(s)	142, 145, 148, 166
ApoI	RAATTY	1 cut(s)	274
AseI	ATTAAT	1 cut(s)	318
AsiGI	ACCGGT	1 cut(s)	178
AspS9I	GGNCC	3 cut(s)	50, 469, 470
AsuHPI	GGTGA	2 cut(s)	3, 247
AvaII	GGWCC	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	473
BbvI	GCAGC	4 cut(s)	154, 157, 160, 178
BccI	CCATC	3 cut(s)	162, 277, 419
BciT130I	CCWGG	3 cut(s)	15, 452, 467
BclI	TGATCA	1 cut(s)	364
BfaI	CTAG	3 cut(s)	225, 303, 384
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	4 cut(s)	143, 146, 149, 167
BlsI	GCNGC	4 cut(s)	144, 147, 150, 168
BmcAI	AGTACT	1 cut(s)	388
Bme1390I	CCNGG	3 cut(s)	15, 452, 467
Bme18I	GGWCC	1 cut(s)	50
BmgBI	CACGTC	2 cut(s)	56, 173
BmgT120I	GGNCC	3 cut(s)	50, 469, 470
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	3 cut(s)	15, 452, 467
BmsI	GCATC	1 cut(s)	296
BpmI	CTGGAG	2 cut(s)	90, 336
BpuEI	CTTGAG	2 cut(s)	53, 378
BsaJI	CCNNGG	3 cut(s)	46, 451, 466
BsaWI	WCCGGW	1 cut(s)	178
Bse118I	RCCGGY	3 cut(s)	178, 257, 513
Bse1I	ACTGG	1 cut(s)	107
BseBI	CCWGG	3 cut(s)	15, 452, 467
BseDI	CCNNGG	3 cut(s)	46, 451, 466
BseGI	GGATG	3 cut(s)	210, 378, 430
BseNI	ACTGG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	4 cut(s)	154, 157, 160, 178
BshFI	GGCC	1 cut(s)	471
BshTI	ACCGGT	1 cut(s)	178
BsiSI	CCGG	3 cut(s)	179, 258, 514
BslFI	GGGAC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	471
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	4 cut(s)	93, 238, 364, 455
BspACI	CCGC	4 cut(s)	299, 473, 511, 517
BspANI	GGCC	1 cut(s)	471
BspHI	TCATGA	2 cut(s)	358, 531
BspLI	GGNNCC	1 cut(s)	471
BspPI	GGATC	2 cut(s)	246, 463
BsrFI	RCCGGY	3 cut(s)	178, 257, 513
BsrI	ACTGG	1 cut(s)	107
BssAI	RCCGGY	3 cut(s)	178, 257, 513
BssECI	CCNNGG	3 cut(s)	46, 451, 466
BssMI	GATC	4 cut(s)	93, 238, 364, 455
BssT1I	CCWWGG	1 cut(s)	46
Bst2UI	CCWGG	3 cut(s)	15, 452, 467
Bst4CI	ACNGT	2 cut(s)	123, 196
Bst6I	CTCTTC	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	473, 515
BstF5I	GGATG	3 cut(s)	210, 378, 430
BstKTI	GATC	4 cut(s)	96, 241, 367, 458
BstMBI	GATC	4 cut(s)	93, 238, 364, 455
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 258, 389, 477
BstNI	CCWGG	3 cut(s)	15, 452, 467
BstSCI	CCNGG	3 cut(s)	13, 450, 465
BstSLI	GKGCMC	1 cut(s)	473
BstV1I	GCAGC	4 cut(s)	154, 157, 160, 178
BstX2I	RGATCY	2 cut(s)	238, 455
BstYI	RGATCY	2 cut(s)	238, 455
BsuRI	GGCC	1 cut(s)	471
BtrI	CACGTC	2 cut(s)	56, 173
BtsCI	GGATG	3 cut(s)	210, 378, 430
Cac8I	GCNNGC	2 cut(s)	473, 515
CciI	TCATGA	2 cut(s)	358, 531
Cfr10I	RCCGGY	3 cut(s)	178, 257, 513
Cfr13I	GGNCC	3 cut(s)	50, 469, 470
Csp6I	GTAC	1 cut(s)	387
CspAI	ACCGGT	1 cut(s)	178
CviAII	CATG	3 cut(s)	235, 359, 532
CviJI	RGCY	8 cut(s)	37, 151, 169, 261, 356, 383, 471, 524
CviKI_1	RGCY	8 cut(s)	37, 151, 169, 261, 356, 383, 471, 524
CviQI	GTAC	1 cut(s)	387
DpnI	GATC	4 cut(s)	95, 240, 366, 457
DpnII	GATC	4 cut(s)	93, 238, 364, 455
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
EciI	GGCGGA	2 cut(s)	500, 532
Eco130I	CCWWGG	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	3 cut(s)	13, 450, 465
EcoT14I	CCWWGG	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	3 cut(s)	238, 362, 535
FaiI	YATR	7 cut(s)	185, 236, 342, 360, 422, 445, 533
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	3 cut(s)	234, 358, 531
FauI	CCCGC	2 cut(s)	306, 480
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	4 cut(s)	143, 146, 149, 167
FokI	GGATG	3 cut(s)	197, 385, 437
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	4 cut(s)	143, 146, 149, 167
FspBI	CTAG	3 cut(s)	225, 303, 384
GluI	GCNGC	4 cut(s)	143, 146, 149, 167
GsuI	CTGGAG	2 cut(s)	90, 336
HaeIII	GGCC	1 cut(s)	471
HapII	CCGG	3 cut(s)	179, 258, 514
Hin1II	CATG	3 cut(s)	238, 362, 535
HincII	GTYRAC	1 cut(s)	176
HindII	GTYRAC	1 cut(s)	176
HinfI	GANTC	2 cut(s)	83, 489
HpaII	CCGG	3 cut(s)	179, 258, 514
HphI	GGTGA	2 cut(s)	3, 247
Hpy166II	GTNNAC	2 cut(s)	53, 176
Hpy188I	TCNGA	1 cut(s)	488
Hpy188III	TCNNGA	5 cut(s)	70, 97, 359, 395, 532
Hpy8I	GTNNAC	2 cut(s)	53, 176
HpyAV	CCTTC	2 cut(s)	199, 503
HpyCH4III	ACNGT	2 cut(s)	123, 196
HpyCH4IV	ACGT	2 cut(s)	55, 172
HpyCH4V	TGCA	2 cut(s)	113, 287
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 258, 389, 477
HpySE526I	ACGT	2 cut(s)	55, 172
Hsp92II	CATG	3 cut(s)	238, 362, 535
KroI	GCCGGC	1 cut(s)	513
KroNI	GCCGGC	1 cut(s)	515
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	93, 238, 364, 455
Lsp1109I	GCAGC	4 cut(s)	154, 157, 160, 178
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	3 cut(s)	225, 303, 384
MaeII	ACGT	2 cut(s)	55, 172
MaeIII	GTNAC	1 cut(s)	123
MalI	GATC	4 cut(s)	95, 240, 366, 457
MboI	GATC	4 cut(s)	93, 238, 364, 455
MboII	GAAGA	6 cut(s)	42, 282, 285, 388, 419, 495
MflI	RGATCY	2 cut(s)	238, 455
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	3 cut(s)	274, 328, 417
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	83, 271
MnlI	CCTC	5 cut(s)	75, 114, 263, 333, 360
MreI	CGCCGGCG	1 cut(s)	513
MroNI	GCCGGC	1 cut(s)	513
MseI	TTAA	1 cut(s)	318
MspI	CCGG	3 cut(s)	179, 258, 514
MspR9I	CCNGG	3 cut(s)	15, 452, 467
MvaI	CCWGG	3 cut(s)	15, 452, 467
MwoI	GCNNNNNNNGC	4 cut(s)	148, 258, 389, 477
NaeI	GCCGGC	1 cut(s)	515
NdeII	GATC	4 cut(s)	93, 238, 364, 455
NgoMIV	GCCGGC	1 cut(s)	513
NlaIII	CATG	3 cut(s)	238, 362, 535
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	1 cut(s)	123
PagI	TCATGA	2 cut(s)	358, 531
PcsI	WCGNNNNNNNCGW	2 cut(s)	200, 484
PdiI	GCCGGC	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	489
PinAI	ACCGGT	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	144, 147, 150, 168
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PshBI	ATTAAT	1 cut(s)	318
Psp6I	CCWGG	3 cut(s)	13, 450, 465
PspGI	CCWGG	3 cut(s)	13, 450, 465
PspN4I	GGNNCC	1 cut(s)	471
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	3 cut(s)	50, 469, 470
PsuI	RGATCY	2 cut(s)	238, 455
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	4 cut(s)	143, 146, 149, 167
Sau3AI	GATC	4 cut(s)	93, 238, 364, 455
Sau96I	GGNCC	3 cut(s)	50, 469, 470
ScaI	AGTACT	1 cut(s)	388
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	3 cut(s)	15, 452, 467
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	9 cut(s)	39, 52, 58, 106, 175, 210, 358, 385, 526
SfaNI	GCATC	1 cut(s)	296
SgrAI	CRCCGGYG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	2 cut(s)	68, 393
SmoI	CTYRAG	2 cut(s)	68, 393
Sse9I	AATT	3 cut(s)	274, 328, 417
SsiI	CCGC	4 cut(s)	299, 473, 511, 517
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	3 cut(s)	225, 303, 384
StyD4I	CCNGG	3 cut(s)	13, 450, 465
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	123, 196
TaiI	ACGT	2 cut(s)	58, 175
TaqI	TCGA	1 cut(s)	272
TasI	AATT	3 cut(s)	274, 328, 417
TatI	WGTACW	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	489
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	123
TseI	GCWGC	4 cut(s)	142, 145, 148, 166
Tsp45I	GTSAC	1 cut(s)	123
TspDTI	ATGAA	4 cut(s)	223, 267, 389, 520
VpaK11BI	GGWCC	1 cut(s)	50
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	1 cut(s)	274
XspI	CTAG	3 cut(s)	225, 303, 384
ZrmI	AGTACT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.