Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Reverse (-)

32619237 .. 32619911

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G022760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAACCCGCCACCGCAGCGGCCCACCACCCCAAAAAAGGAGCTCCAACTCCAAGGCCCCCGCCCAGCCCCTCTCAAAGTCAGCAAAGACTCCGTCAAAATCAAGAAGCCGCCTCCGCACCCCCACCTCCGCCAAAACCCACCTCAACAACAGTTCCAGCCGCCGCAGCAGCACCAGGAGCCGGTGGTCATCTACACCGTCTCGCCCAAAGTGATTCACACCTCCGTCAACGAGTTCATGTCCCTCGTCCAACGCCTCACCGGCCCTTCCTCCTCTCCCCCCGGCGACCTCTCCCCCGCCGCCCGCCTCGCCTCCATTGAGAAAACCAGCCCCTCTTCCGATCAGAAGCACTTCCCGCCCGTAAATACCACCTCAGCCACCGCCGCCATTGACGACGACTTTATGGATAGTATTCTGGAGGGTATTGACTTGATGGGTCAGTTCCCGGGGATTCTGTCGCCGGCGCCGGCCACCATGCCGCCGATCCCAGCTGGGTTCTTCTCCCCGGCCGCCGAAGACCCGCAAAACTTCAACTGGCAAGGCGCCAACAACATCAACAGCGGCTTCAATAGTTTCATGCCGAGCCCTTCCTCGAATTCGGCTCTGTTTTCGGCTCCTCTGGTTTCTCCGAGCCCTTCTTCGTGGGACCTCTTCAACAATTTCTTGGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0008150 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

224

Amino Acids

24.26

Weight (kDa)

6.18

Isoelectric Point (pI)

76.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	66 - 93	1.4e-12	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	463, 542
AclWI	GGATC	1 cut(s)	478
AcoI	YGGCCR	2 cut(s)	468, 507
AcsI	RAATTY	1 cut(s)	595
AcyI	GRCGYC	2 cut(s)	464, 543
AfiI	CCNNNNNNNGG	2 cut(s)	37, 181
AgsI	TTSAA	3 cut(s)	532, 568, 655
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	2 cut(s)	43, 491
AluI	AGCT	2 cut(s)	43, 491
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	478
Ama87I	CYCGRG	1 cut(s)	445
AoxI	GGCC	5 cut(s)	20, 55, 262, 468, 507
ApeKI	GCWGC	3 cut(s)	16, 166, 169
ApoI	RAATTY	1 cut(s)	595
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	2 cut(s)	466, 545
AspS9I	GGNCC	4 cut(s)	21, 56, 263, 646
AsuC2I	CCSGG	4 cut(s)	282, 446, 447, 506
AsuHPI	GGTGA	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	646
BanI	GGYRCC	2 cut(s)	463, 542
BanII	GRGCYC	3 cut(s)	45, 587, 635
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	373
BbvI	GCAGC	3 cut(s)	28, 178, 181
BccI	CCATC	1 cut(s)	427
BciT130I	CCWGG	1 cut(s)	176
BcnI	CCSGG	4 cut(s)	282, 446, 447, 506
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	673
BfoI	RGCGCY	2 cut(s)	467, 546
BglI	GCCNNNNNGGC	1 cut(s)	261
Bme1390I	CCNGG	5 cut(s)	176, 282, 446, 447, 506
Bme18I	GGWCC	1 cut(s)	646
BmeT110I	CYCGRG	1 cut(s)	445
BmgT120I	GGNCC	4 cut(s)	21, 56, 263, 646
BmiI	GGNNCC	6 cut(s)	58, 180, 465, 544, 615, 647
BmrFI	CCNGG	5 cut(s)	176, 282, 446, 447, 506
BpiI	GAAGAC	1 cut(s)	522
BpmI	CTGGAG	1 cut(s)	437
Bpu10I	CCTNAGC	1 cut(s)	373
BpuMI	CCSGG	4 cut(s)	282, 446, 447, 506
BsaHI	GRCGYC	2 cut(s)	464, 543
BsaJI	CCNNGG	5 cut(s)	52, 280, 445, 446, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 181
Bse118I	RCCGGY	4 cut(s)	181, 260, 460, 466
Bse1I	ACTGG	1 cut(s)	539
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	5 cut(s)	52, 280, 445, 446, 504
BseLI	CCNNNNNNNGG	2 cut(s)	37, 181
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	539
BseRI	GAGGAG	2 cut(s)	262, 606
BseX3I	CGGCCG	1 cut(s)	507
BseXI	GCAGC	3 cut(s)	28, 178, 181
BseYI	CCCAGC	3 cut(s)	64, 487, 491
Bsh1285I	CGRYCG	1 cut(s)	510
BshFI	GGCC	5 cut(s)	22, 57, 264, 470, 509
BshNI	GGYRCC	2 cut(s)	463, 542
BsiEI	CGRYCG	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	445
BsiSI	CCGG	7 cut(s)	182, 261, 282, 446, 461, 467, 506
BslFI	GGGAC	2 cut(s)	226, 659
BslI	CCNNNNNNNGG	2 cut(s)	37, 181
BsmAI	GTCTC	1 cut(s)	205
BsmBI	CGTCTC	1 cut(s)	205
BsmFI	GGGAC	2 cut(s)	226, 659
BsnI	GGCC	5 cut(s)	22, 57, 264, 470, 509
BsoBI	CYCGRG	1 cut(s)	445
Bsp1286I	GDGCHC	3 cut(s)	45, 587, 635
Bsp143I	GATC	2 cut(s)	340, 483
BspANI	GGCC	5 cut(s)	22, 57, 264, 470, 509
BspCNI	CTCAG	1 cut(s)	386
BspLI	GGNNCC	6 cut(s)	58, 180, 465, 544, 615, 647
BspPI	GGATC	1 cut(s)	478
BspT107I	GGYRCC	2 cut(s)	463, 542
BsrFI	RCCGGY	4 cut(s)	181, 260, 460, 466
BsrI	ACTGG	1 cut(s)	539
BssAI	RCCGGY	4 cut(s)	181, 260, 460, 466
BssECI	CCNNGG	5 cut(s)	52, 280, 445, 446, 504
BssMI	GATC	2 cut(s)	340, 483
BssNI	GRCGYC	2 cut(s)	464, 543
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	153, 199
Bst6I	CTCTTC	2 cut(s)	340, 656
BstACI	GRCGYC	2 cut(s)	464, 543
BstC8I	GCNNGC	3 cut(s)	304, 462, 468
BstDEI	CTNAG	1 cut(s)	373
BstH2I	RGCGCY	2 cut(s)	467, 546
BstHHI	GCGC	2 cut(s)	466, 545
BstKTI	GATC	2 cut(s)	343, 486
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	2 cut(s)	340, 483
BstMCI	CGRYCG	1 cut(s)	510
BstMWI	GCNNNNNNNGC	9 cut(s)	16, 115, 166, 169, 178, 261, 308, 355, 383
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	5 cut(s)	174, 280, 444, 445, 504
BstV1I	GCAGC	3 cut(s)	28, 178, 181
BstV2I	GAAGAC	1 cut(s)	522
BstZI	CGGCCG	1 cut(s)	507
BsuRI	GGCC	5 cut(s)	22, 57, 264, 470, 509
Cac8I	GCNNGC	3 cut(s)	304, 462, 468
CfoI	GCGC	2 cut(s)	466, 545
Cfr10I	RCCGGY	4 cut(s)	181, 260, 460, 466
Cfr13I	GGNCC	4 cut(s)	21, 56, 263, 646
Cfr9I	CCCGGG	1 cut(s)	445
CviAII	CATG	3 cut(s)	238, 475, 577
DdeI	CTNAG	1 cut(s)	373
DinI	GGCGCC	2 cut(s)	465, 544
DpnI	GATC	2 cut(s)	342, 485
DpnII	GATC	2 cut(s)	340, 483
EaeI	YGGCCR	2 cut(s)	468, 507
EagI	CGGCCG	1 cut(s)	507
Eam1104I	CTCTTC	2 cut(s)	340, 656
EarI	CTCTTC	2 cut(s)	340, 656
EciI	GGCGGA	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	43
EclXI	CGGCCG	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	52
Eco24I	GRGCYC	3 cut(s)	45, 587, 635
Eco47I	GGWCC	1 cut(s)	646
Eco52I	CGGCCG	1 cut(s)	507
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	43
EcoO109I	RGGNCCY	2 cut(s)	56, 646
EcoRI	GAATTC	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	3 cut(s)	45, 587, 635
EgeI	GGCGCC	2 cut(s)	465, 544
EheI	GGCGCC	2 cut(s)	465, 544
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	3 cut(s)	241, 478, 580
FaiI	YATR	4 cut(s)	239, 404, 476, 578
FaqI	GGGAC	2 cut(s)	226, 659
FatI	CATG	3 cut(s)	237, 474, 576
FauI	CCCGC	6 cut(s)	15, 68, 304, 311, 363, 528
FriOI	GRGCYC	3 cut(s)	45, 587, 635
FspBI	CTAG	1 cut(s)	673
GlaI	GCGC	2 cut(s)	465, 544
GsaI	CCCAGC	3 cut(s)	68, 491, 495
GsuI	CTGGAG	1 cut(s)	437
HaeII	RGCGCY	2 cut(s)	467, 546
HaeIII	GGCC	5 cut(s)	22, 57, 264, 470, 509
HapII	CCGG	7 cut(s)	182, 261, 282, 446, 461, 467, 506
HhaI	GCGC	2 cut(s)	466, 545
Hin1I	GRCGYC	2 cut(s)	464, 543
Hin1II	CATG	3 cut(s)	241, 478, 580
Hin6I	GCGC	2 cut(s)	464, 543
HinP1I	GCGC	2 cut(s)	464, 543
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	89, 214, 451
HpaII	CCGG	7 cut(s)	182, 261, 282, 446, 461, 467, 506
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	3 cut(s)	340, 345, 630
Hpy188III	TCNNGA	2 cut(s)	103, 416
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	3 cut(s)	276, 597, 645
HpyCH4III	ACNGT	2 cut(s)	153, 199
HpyF10VI	GCNNNNNNNGC	9 cut(s)	16, 115, 166, 169, 178, 261, 308, 355, 383
HpyF3I	CTNAG	1 cut(s)	373
Hsp92I	GRCGYC	2 cut(s)	464, 543
Hsp92II	CATG	3 cut(s)	241, 478, 580
HspAI	GCGC	2 cut(s)	464, 543
KasI	GGCGCC	2 cut(s)	463, 542
KroI	GCCGGC	2 cut(s)	460, 466
KroNI	GCCGGC	2 cut(s)	462, 468
Kzo9I	GATC	2 cut(s)	340, 483
LmnI	GCTCC	4 cut(s)	40, 48, 178, 619
Lsp1109I	GCAGC	3 cut(s)	28, 178, 181
MaeI	CTAG	1 cut(s)	673
MalI	GATC	2 cut(s)	342, 485
MboI	GATC	2 cut(s)	340, 483
MboII	GAAGA	5 cut(s)	327, 490, 527, 630, 643
MhlI	GDGCHC	3 cut(s)	45, 587, 635
MluCI	AATT	2 cut(s)	595, 658
Mly113I	GGCGCC	2 cut(s)	464, 543
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	70, 274
MreI	CGCCGGCG	1 cut(s)	460
MroNI	GCCGGC	2 cut(s)	460, 466
MroXI	GAANNNNTTC	1 cut(s)	350
MspA1I	CMGCKG	3 cut(s)	19, 491, 561
MspI	CCGG	7 cut(s)	182, 261, 282, 446, 461, 467, 506
MspR9I	CCNGG	5 cut(s)	176, 282, 446, 447, 506
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	9 cut(s)	16, 115, 166, 169, 178, 261, 308, 355, 383
NaeI	GCCGGC	2 cut(s)	462, 468
NarI	GGCGCC	2 cut(s)	464, 543
NciI	CCSGG	4 cut(s)	282, 446, 447, 506
NdeII	GATC	2 cut(s)	340, 483
NgoMIV	GCCGGC	2 cut(s)	460, 466
NlaIII	CATG	3 cut(s)	241, 478, 580
NlaIV	GGNNCC	6 cut(s)	58, 180, 465, 544, 615, 647
NmeAIII	GCCGAG	1 cut(s)	606
PdiI	GCCGGC	2 cut(s)	462, 468
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	214, 451
PflFI	GACNNNGTC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	83
PluTI	GGCGCC	2 cut(s)	467, 546
PpsI	GAGTC	1 cut(s)	83
PpuMI	RGGWCCY	1 cut(s)	646
Psp124BI	GAGCTC	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	646
Psp6I	CCWGG	1 cut(s)	174
PspFI	CCCAGC	3 cut(s)	64, 487, 491
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	6 cut(s)	58, 180, 465, 544, 615, 647
PspPI	GGNCC	4 cut(s)	21, 56, 263, 646
PspPPI	RGGWCCY	1 cut(s)	646
PsyI	GACNNNGTC	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	491
SacI	GAGCTC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	340, 483
Sau96I	GGNCC	4 cut(s)	21, 56, 263, 646
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	5 cut(s)	176, 282, 446, 447, 506
SduI	GDGCHC	3 cut(s)	45, 587, 635
SetI	ASST	8 cut(s)	45, 129, 145, 224, 291, 374, 493, 651
SfoI	GGCGCC	2 cut(s)	465, 544
SgrAI	CRCCGGYG	1 cut(s)	460
SinI	GGWCC	1 cut(s)	646
SmaI	CCCGGG	1 cut(s)	447
Sse9I	AATT	2 cut(s)	595, 658
SspDI	GGCGCC	2 cut(s)	463, 542
SspMI	CTAG	1 cut(s)	673
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	5 cut(s)	174, 280, 444, 445, 504
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	153, 199
TaqI	TCGA	1 cut(s)	593
TasI	AATT	2 cut(s)	595, 658
TauI	GCSGC	9 cut(s)	22, 112, 163, 166, 302, 386, 481, 512, 564
TfiI	GAWTC	2 cut(s)	214, 451
TseI	GCWGC	3 cut(s)	16, 166, 169
TspDTI	ATGAA	3 cut(s)	17, 226, 565
TspGWI	ACGGA	2 cut(s)	82, 214
TspMI	CCCGGG	1 cut(s)	445
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	646
XapI	RAATTY	1 cut(s)	595
XmaI	CCCGGG	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.