Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Reverse (-)

22487333 .. 22490695

Gene Structure 3363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0227500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCTTAAAAGGAATCTCATGCCACTACTAAAAAAAACCTCAATTGCTTCGAAAATTTGCGACGGAAAAATATTCCGTCGCGAAAAGTCAGCTTTTGCGACGGCATATACTACGTCGGTAGGCTGTTGTTTTAGGAGCCGTATTCCAAAAGATGAGCAGACAGTGAGATTGGATTCTGTTGATGGTCGTCTCCTCCTCAAAGAAGCTGAACGAGTTGATGGCGAGGGATGTTGGTTTCAGGACCCTGGCGTTCTTGATCTGGATAAGAGCTCCAGGGAGAAGCCTTTTCTGTATGAAATTGTGGCAACTGGGCGTAATGGTTTGATTATCTTGTCCGTGACAGCCGAGCTTGCAACAACTATTGCAGCAGTAGCTTATTTGAGATTGGCAGGAAGACCCCCAGTTCTCCCATCTAACAACTTTTCTTATTCCGAGAACTTCTTATACATGCTAGACTCCTTGGGCAATAGAGCTTATAAACCAAATTCCCGCCTCGCCCAAGTATTGGACATTCTCTTCATACTCCACGCTGAACATGAGATGAATTGCTCAACGGCTGCTGCTCGGCATCTGGCGTCAAGTGGTGTGGATGTTTACACTGCCCTTTCTGGAGCTGTTGGAGCTCTATATGGTCCCCTTCATGGTGGAGCAAATGAGGCTGTGCTTAAGATGCTAAGTGAAATTGGATCTGTTGAGAACATTCCAGAGTTCATTGAGGGTGTGAAGAGCAGGGCAATGGGATTTCCAACGGAGTTCTTCCCAGTTTTATTTGCAATCCCTAGAATGGCTGGTTACTTGGCACACTGGAGAGAATCCATGGATGCCCAAGCAGGGCTGTTCAAAAGCACAAGTCATGGATCAGTGAATGAAGAAGAAGCTGATAGGATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0008150 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

297

Amino Acids

32.57

Weight (kDa)

6.61

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_synt	PF00285	118 - 243	2.9e-42	Citrate synthase, C-terminal domain
Citrate_synt	PF00285	237 - 275	2.1e-08	Citrate synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	477
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccII	CGCG	1 cut(s)	81
AciI	CCGC	1 cut(s)	490
AclWI	GGATC	2 cut(s)	694, 865
AcsI	RAATTY	2 cut(s)	54, 484
AcyI	GRCGYC	1 cut(s)	575
AfiI	CCNNNNNNNGG	4 cut(s)	505, 641, 784, 831
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	1 cut(s)	841
AjnI	CCWGG	2 cut(s)	244, 272
AluBI	AGCT	9 cut(s)	92, 206, 270, 349, 374, 473, 614, 623, 878
AluI	AGCT	9 cut(s)	92, 206, 270, 349, 374, 473, 614, 623, 878
Alw21I	GWGCWC	2 cut(s)	272, 625
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	2 cut(s)	694, 865
ApeKI	GCWGC	3 cut(s)	365, 557, 560
ApoI	RAATTY	2 cut(s)	54, 484
AspS9I	GGNCC	2 cut(s)	241, 632
AsuII	TTCGAA	1 cut(s)	50
AvaII	GGWCC	2 cut(s)	241, 632
BanII	GRGCYC	2 cut(s)	272, 625
BbsI	GAAGAC	1 cut(s)	400
Bbv12I	GWGCWC	2 cut(s)	272, 625
BbvI	GCAGC	3 cut(s)	377, 544, 547
BccI	CCATC	3 cut(s)	176, 212, 418
BceAI	ACGGC	3 cut(s)	117, 123, 570
BciT130I	CCWGG	2 cut(s)	246, 274
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	2 cut(s)	452, 780
BfrI	CTTAAG	1 cut(s)	665
BisI	GCNGC	3 cut(s)	366, 558, 561
BlsI	GCNGC	3 cut(s)	367, 559, 562
Bme1390I	CCNGG	2 cut(s)	246, 274
Bme18I	GGWCC	2 cut(s)	241, 632
BmgT120I	GGNCC	2 cut(s)	241, 632
BmiI	GGNNCC	3 cut(s)	137, 243, 634
BmrFI	CCNGG	2 cut(s)	246, 274
BmrI	ACTGGG	3 cut(s)	318, 395, 755
BmsI	GCATC	3 cut(s)	577, 660, 811
BmuI	ACTGGG	3 cut(s)	318, 395, 755
BpiI	GAAGAC	1 cut(s)	400
BpmI	CTGGAG	3 cut(s)	256, 630, 826
Bpu14I	TTCGAA	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	575
BsaJI	CCNNGG	4 cut(s)	244, 273, 459, 816
Bsc4I	CCNNNNNNNGG	4 cut(s)	505, 641, 784, 831
Bse1I	ACTGG	4 cut(s)	313, 401, 761, 809
Bse3DI	GCAATG	1 cut(s)	741
BseBI	CCWGG	2 cut(s)	246, 274
BseDI	CCNNGG	4 cut(s)	244, 273, 459, 816
BseGI	GGATG	3 cut(s)	233, 595, 826
BseLI	CCNNNNNNNGG	4 cut(s)	505, 641, 784, 831
BseMI	GCAATG	1 cut(s)	741
BseNI	ACTGG	4 cut(s)	313, 401, 761, 809
BseRI	GAGGAG	2 cut(s)	182, 185
BseXI	GCAGC	3 cut(s)	377, 544, 547
Bsh1236I	CGCG	1 cut(s)	81
BsiHKAI	GWGCWC	2 cut(s)	272, 625
BslFI	GGGAC	1 cut(s)	618
BslI	CCNNNNNNNGG	4 cut(s)	505, 641, 784, 831
BsmAI	GTCTC	1 cut(s)	194
BsmBI	CGTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	618
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	272, 625
Bsp143I	GATC	3 cut(s)	256, 686, 857
Bsp19I	CCATGG	1 cut(s)	816
Bsp68I	TCGCGA	1 cut(s)	81
BspACI	CCGC	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	3 cut(s)	137, 243, 634
BspPI	GGATC	2 cut(s)	694, 865
BspQI	GCTCTTC	1 cut(s)	719
BspT104I	TTCGAA	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	741
BsrI	ACTGG	4 cut(s)	313, 401, 761, 809
BssECI	CCNNGG	4 cut(s)	244, 273, 459, 816
BssMI	GATC	3 cut(s)	256, 686, 857
BssNI	GRCGYC	1 cut(s)	575
BssT1I	CCWWGG	2 cut(s)	459, 816
Bst2UI	CCWGG	2 cut(s)	246, 274
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	521, 719
BstACI	GRCGYC	1 cut(s)	575
BstAFI	CTTAAG	1 cut(s)	665
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	674
BstDSI	CCRYGG	1 cut(s)	816
BstF5I	GGATG	3 cut(s)	233, 595, 826
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	3 cut(s)	259, 689, 860
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	3 cut(s)	256, 686, 857
BstMWI	GCNNNNNNNGC	5 cut(s)	350, 371, 620, 656, 670
BstNI	CCWGG	2 cut(s)	246, 274
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	2 cut(s)	244, 272
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	377, 544, 547
BstV2I	GAAGAC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	686
BtgI	CCRYGG	1 cut(s)	816
BtsCI	GGATG	3 cut(s)	233, 595, 826
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	4 cut(s)	168, 597, 802, 867
BtuMI	TCGCGA	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	351
Cfr13I	GGNCC	2 cut(s)	241, 632
CseI	GACGC	1 cut(s)	564
CspCI	CAANNNNNGTGG	2 cut(s)	567, 602
CviAII	CATG	6 cut(s)	19, 448, 536, 641, 817, 854
DdeI	CTNAG	1 cut(s)	674
DpnI	GATC	3 cut(s)	258, 688, 859
DpnII	GATC	3 cut(s)	256, 686, 857
Eam1104I	CTCTTC	2 cut(s)	521, 719
EarI	CTCTTC	2 cut(s)	521, 719
Ecl136II	GAGCTC	2 cut(s)	270, 623
Eco130I	CCWWGG	2 cut(s)	459, 816
Eco24I	GRGCYC	2 cut(s)	272, 625
Eco47I	GGWCC	2 cut(s)	241, 632
Eco53kI	GAGCTC	2 cut(s)	270, 623
EcoICRI	GAGCTC	2 cut(s)	270, 623
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRII	CCWGG	2 cut(s)	244, 272
EcoT14I	CCWWGG	2 cut(s)	459, 816
EcoT38I	GRGCYC	2 cut(s)	272, 625
ErhI	CCWWGG	2 cut(s)	459, 816
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	6 cut(s)	22, 451, 539, 644, 820, 857
FaqI	GGGAC	1 cut(s)	618
FatI	CATG	6 cut(s)	18, 447, 535, 640, 816, 853
FauI	CCCGC	1 cut(s)	497
Fnu4HI	GCNGC	3 cut(s)	366, 558, 561
FokI	GGATG	3 cut(s)	240, 602, 833
FriOI	GRGCYC	2 cut(s)	272, 625
Fsp4HI	GCNGC	3 cut(s)	366, 558, 561
FspBI	CTAG	2 cut(s)	452, 780
GluI	GCNGC	3 cut(s)	366, 558, 561
GsuI	CTGGAG	3 cut(s)	256, 630, 826
HgaI	GACGC	1 cut(s)	564
Hin1I	GRCGYC	1 cut(s)	575
Hin1II	CATG	6 cut(s)	22, 451, 539, 644, 820, 857
HinfI	GANTC	4 cut(s)	13, 173, 455, 812
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	1 cut(s)	433
Hpy188III	TCNNGA	6 cut(s)	80, 239, 254, 260, 609, 704
Hpy8I	GTNNAC	1 cut(s)	595
Hpy99I	CGWCG	4 cut(s)	65, 81, 103, 118
HpyAV	CCTTC	1 cut(s)	647
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	3 cut(s)	353, 365, 773
HpyF10VI	GCNNNNNNNGC	5 cut(s)	350, 371, 620, 656, 670
HpyF3I	CTNAG	1 cut(s)	674
HpySE526I	ACGT	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	575
Hsp92II	CATG	6 cut(s)	22, 451, 539, 644, 820, 857
Kzo9I	GATC	3 cut(s)	256, 686, 857
LguI	GCTCTTC	1 cut(s)	719
LmnI	GCTCC	5 cut(s)	135, 275, 611, 620, 647
Lsp1109I	GCAGC	3 cut(s)	377, 544, 547
LweI	GCATC	3 cut(s)	577, 660, 811
MaeI	CTAG	2 cut(s)	452, 780
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	337, 791
MalI	GATC	3 cut(s)	258, 688, 859
MboI	GATC	3 cut(s)	256, 686, 857
MboII	GAAGA	6 cut(s)	405, 508, 736, 748, 881, 884
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	686
MhlI	GDGCHC	2 cut(s)	272, 625
MluCI	AATT	6 cut(s)	42, 54, 297, 484, 544, 681
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	2 cut(s)	598, 770
MnlI	CCTC	7 cut(s)	49, 203, 206, 217, 503, 649, 709
MseI	TTAA	2 cut(s)	6, 666
MspCI	CTTAAG	1 cut(s)	665
MspR9I	CCNGG	2 cut(s)	246, 274
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	2 cut(s)	246, 274
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	5 cut(s)	350, 371, 620, 656, 670
NcoI	CCATGG	1 cut(s)	816
NdeII	GATC	3 cut(s)	256, 686, 857
NlaIII	CATG	6 cut(s)	22, 451, 539, 644, 820, 857
NlaIV	GGNNCC	3 cut(s)	137, 243, 634
NmeAIII	GCCGAG	2 cut(s)	370, 544
NmuCI	GTSAC	1 cut(s)	337
NruI	TCGCGA	1 cut(s)	81
NspI	RCATGY	1 cut(s)	451
NspV	TTCGAA	1 cut(s)	50
PciSI	GCTCTTC	1 cut(s)	719
PfeI	GAWTC	3 cut(s)	13, 173, 812
PflMI	CCANNNNNTGG	1 cut(s)	505
PkrI	GCNGC	3 cut(s)	367, 559, 562
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	241
PsiI	TTATAA	1 cut(s)	477
Psp124BI	GAGCTC	2 cut(s)	272, 625
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	2 cut(s)	244, 272
PspGI	CCWGG	2 cut(s)	244, 272
PspN4I	GGNNCC	3 cut(s)	137, 243, 634
PspPI	GGNCC	2 cut(s)	241, 632
PspPPI	RGGWCCY	1 cut(s)	241
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
PsuI	RGATCY	1 cut(s)	686
RruI	TCGCGA	1 cut(s)	81
SacI	GAGCTC	2 cut(s)	272, 625
SapI	GCTCTTC	1 cut(s)	719
SaqAI	TTAA	2 cut(s)	6, 666
SatI	GCNGC	3 cut(s)	366, 558, 561
Sau3AI	GATC	3 cut(s)	256, 686, 857
Sau96I	GGNCC	2 cut(s)	241, 632
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	2 cut(s)	246, 274
SduI	GDGCHC	2 cut(s)	272, 625
SfaNI	GCATC	3 cut(s)	577, 660, 811
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	2 cut(s)	241, 632
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
Sse9I	AATT	6 cut(s)	42, 54, 297, 484, 544, 681
SsiI	CCGC	1 cut(s)	490
SspI	AATATT	1 cut(s)	72
SspMI	CTAG	2 cut(s)	452, 780
SstI	GAGCTC	2 cut(s)	272, 625
StyD4I	CCNGG	2 cut(s)	244, 272
StyI	CCWWGG	2 cut(s)	459, 816
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	1 cut(s)	50
TasI	AATT	6 cut(s)	42, 54, 297, 484, 544, 681
TfiI	GAWTC	3 cut(s)	13, 173, 812
Tru1I	TTAA	2 cut(s)	6, 666
Tru9I	TTAA	2 cut(s)	6, 666
TscAI	CASTG	4 cut(s)	168, 604, 809, 867
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	3 cut(s)	365, 557, 560
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	6 cut(s)	309, 508, 557, 629, 700, 882
TspGWI	ACGGA	4 cut(s)	65, 78, 325, 764
TspRI	CASTG	4 cut(s)	168, 604, 809, 867
Van91I	CCANNNNNTGG	1 cut(s)	505
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	241, 632
XapI	RAATTY	2 cut(s)	54, 484
XceI	RCATGY	1 cut(s)	451
XspI	CTAG	2 cut(s)	452, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.