Rh6DG210700

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003162
Physical Location & Seq
Forward (+)
37509938 .. 37512096
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG210700.1

Sequence Viewer

Length: 645 bp
ATGGATTTTTCAGACTACCCAACAGGCAAGTCTCCAAGAAGAGAGCTCCAACTCCAGGGTCCACGTCCAACACCTCTCAAGATTCATAAAGATTCCCACAAGATCAAGAAGCCACCGATTGTTCCTCAACCCTCGCAACCTAATCAGCCTCACCAGCCGCCTCGACAACCGGTTATAATCTACACAGTCTCGCCGAAGATCATTCACACAAACCCTAGCGACTTCATGAACCTCGTCCAACGCCTCACCGGATTACCTCGCTCCAATTCTTCTGCTTCTTGTTCTTCCTCGTCTCCTCGAAATGATAAAAACACTAATGGAGGCAGTGGTGAATCGACAATGGAGCAGTCTAGGTCGTCGGATCATGAAGGAATCATGGACATGGATGATGATGATCGTGATCGTGATGCTGATGTGAAGCAGCAAAGGGGTTTGTTTCCGGGGATCTTATCGCCAGCTCCGGGTGCGCTTCCTCCGATTCCTTCAAGCTTCTTCTCTCCGGCGGCGGATAGCTTCTTCCATGATTTGAGCCCGGTACTTCATGGTAACAGGAACTTCATAGAAGGTAGCTTCATGCCTAGTCCGTCCAACTTCTTTTCCCCTACACCGTCCATTGACTTATTCAACAATTTTTCCGATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
VQ

Protein Analysis

214

Amino Acids

23.59

Weight (kDa)

6.36

Isoelectric Point (pI)

69.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 62 - 86 3.5e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AciI CCGC 3 cut(s) 158, 503, 506
AclWI GGATC 2 cut(s) 369, 452
AfaI GTAC 1 cut(s) 537
AfiI CCNNNNNNNGG 2 cut(s) 55, 461
AgeI ACCGGT 1 cut(s) 169
AgsI TTSAA 2 cut(s) 486, 625
AjiI CACGTC 1 cut(s) 65
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 5 cut(s) 46, 458, 489, 513, 570
AluI AGCT 5 cut(s) 46, 458, 489, 513, 570
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 3 cut(s) 36, 193, 297
AlwI GGATC 2 cut(s) 369, 452
ApeKI GCWGC 1 cut(s) 421
AsiGI ACCGGT 1 cut(s) 169
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 3 cut(s) 441, 462, 533
AsuHPI GGTGA 3 cut(s) 143, 238, 341
AvaII GGWCC 1 cut(s) 59
BanII GRGCYC 2 cut(s) 48, 533
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 433
BciT130I CCWGG 1 cut(s) 56
BcnI CCSGG 3 cut(s) 441, 462, 533
BcoDI GTCTC 3 cut(s) 36, 193, 297
BfaI CTAG 3 cut(s) 216, 351, 579
BisI GCNGC 3 cut(s) 158, 422, 504
BlsI GCNGC 3 cut(s) 159, 423, 505
Bme1390I CCNGG 4 cut(s) 56, 441, 462, 533
Bme18I GGWCC 1 cut(s) 59
BmgBI CACGTC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 4 cut(s) 56, 441, 462, 533
BmsI GCATC 1 cut(s) 397
BpmI CTGGAG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 3 cut(s) 441, 462, 533
BsaBI GATNNNNATC 2 cut(s) 393, 399
BsaJI CCNNGG 2 cut(s) 55, 440
BsaWI WCCGGW 2 cut(s) 169, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 461
Bse118I RCCGGY 1 cut(s) 169
Bse8I GATNNNNATC 2 cut(s) 393, 399
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 55, 440
BseGI GGATG 1 cut(s) 391
BseJI GATNNNNATC 2 cut(s) 393, 399
BseLI CCNNNNNNNGG 2 cut(s) 55, 461
BseRI GAGGAG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 433
BshTI ACCGGT 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 6 cut(s) 170, 249, 440, 461, 500, 533
BslI CCNNNNNNNGG 2 cut(s) 55, 461
BsmAI GTCTC 3 cut(s) 36, 193, 297
BsmBI CGTCTC 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 48, 533
Bsp143I GATC 6 cut(s) 102, 198, 361, 394, 400, 444
BspACI CCGC 3 cut(s) 158, 503, 506
BspHI TCATGA 2 cut(s) 225, 364
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 2 cut(s) 369, 452
BsrFI RCCGGY 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 55, 440
BssMI GATC 6 cut(s) 102, 198, 361, 394, 400, 444
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 2 cut(s) 187, 609
Bst6I CTCTTC 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 456
BstF5I GGATG 1 cut(s) 391
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 6 cut(s) 105, 201, 364, 397, 403, 447
BstMAI GTCTC 3 cut(s) 36, 193, 297
BstMBI GATC 6 cut(s) 102, 198, 361, 394, 400, 444
BstMWI GCNNNNNNNGC 2 cut(s) 154, 464
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 4 cut(s) 54, 439, 460, 531
BstV1I GCAGC 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 444
BstYI RGATCY 1 cut(s) 444
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 391
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 456
CciI TCATGA 2 cut(s) 225, 364
CfoI GCGC 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 536
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 7 cut(s) 226, 365, 376, 382, 521, 542, 574
CviJI RGCY 9 cut(s) 46, 112, 148, 157, 458, 489, 513, 531, 570
CviKI_1 RGCY 9 cut(s) 46, 112, 148, 157, 458, 489, 513, 531, 570
CviQI GTAC 1 cut(s) 536
DpnI GATC 6 cut(s) 104, 200, 363, 396, 402, 446
DpnII GATC 6 cut(s) 102, 198, 361, 394, 400, 444
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 521
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 2 cut(s) 48, 533
Eco47I GGWCC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 48, 533
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 7 cut(s) 229, 368, 379, 385, 524, 545, 577
FatI CATG 7 cut(s) 225, 364, 375, 381, 520, 541, 573
Fnu4HI GCNGC 3 cut(s) 158, 422, 504
FokI GGATG 1 cut(s) 398
FriOI GRGCYC 2 cut(s) 48, 533
Fsp4HI GCNGC 3 cut(s) 158, 422, 504
FspBI CTAG 3 cut(s) 216, 351, 579
GlaI GCGC 1 cut(s) 468
GluI GCNGC 3 cut(s) 158, 422, 504
GsuI CTGGAG 1 cut(s) 38
HapII CCGG 6 cut(s) 170, 249, 440, 461, 500, 533
HhaI GCGC 1 cut(s) 469
Hin1II CATG 7 cut(s) 229, 368, 379, 385, 524, 545, 577
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HindIII AAGCTT 1 cut(s) 487
HinfI GANTC 5 cut(s) 82, 92, 332, 372, 478
HpaII CCGG 6 cut(s) 170, 249, 440, 461, 500, 533
HphI GGTGA 3 cut(s) 143, 238, 341
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 4 cut(s) 13, 361, 477, 637
Hpy188III TCNNGA 6 cut(s) 79, 106, 226, 365, 398, 404
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 3 cut(s) 362, 492, 557
HpyCH4III ACNGT 2 cut(s) 187, 609
HpyCH4IV ACGT 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 464
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 7 cut(s) 229, 368, 379, 385, 524, 545, 577
HspAI GCGC 1 cut(s) 467
Kzo9I GATC 6 cut(s) 102, 198, 361, 394, 400, 444
LmnI GCTCC 4 cut(s) 51, 266, 343, 463
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 1 cut(s) 397
MaeI CTAG 3 cut(s) 216, 351, 579
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 545
MalI GATC 6 cut(s) 104, 200, 363, 396, 402, 446
MboI GATC 6 cut(s) 102, 198, 361, 394, 400, 444
MboII GAAGA 6 cut(s) 51, 208, 261, 276, 484, 508
MflI RGATCY 1 cut(s) 444
MhlI GDGCHC 2 cut(s) 48, 533
MluCI AATT 2 cut(s) 265, 628
MmeI TCCRAC 5 cut(s) 73, 92, 262, 339, 612
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 6 cut(s) 170, 249, 440, 461, 500, 533
MspR9I CCNGG 4 cut(s) 56, 441, 462, 533
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 154, 464
NciI CCSGG 3 cut(s) 441, 462, 533
NdeII GATC 6 cut(s) 102, 198, 361, 394, 400, 444
NlaIII CATG 7 cut(s) 229, 368, 379, 385, 524, 545, 577
NlaIV GGNNCC 1 cut(s) 60
PagI TCATGA 2 cut(s) 225, 364
PfeI GAWTC 5 cut(s) 82, 92, 332, 372, 478
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 3 cut(s) 159, 423, 505
PsiI TTATAA 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 444
RsaI GTAC 1 cut(s) 537
RsaNI GTAC 1 cut(s) 536
RseI CAYNNNNRTG 1 cut(s) 380
SacI GAGCTC 1 cut(s) 48
SatI GCNGC 3 cut(s) 158, 422, 504
Sau3AI GATC 6 cut(s) 102, 198, 361, 394, 400, 444
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 4 cut(s) 56, 441, 462, 533
SduI GDGCHC 2 cut(s) 48, 533
SfaNI GCATC 1 cut(s) 397
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 265, 628
SsiI CCGC 3 cut(s) 158, 503, 506
SspMI CTAG 3 cut(s) 216, 351, 579
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 4 cut(s) 54, 439, 460, 531
TaaI ACNGT 2 cut(s) 187, 609
TaiI ACGT 1 cut(s) 67
TaqI TCGA 3 cut(s) 163, 298, 335
TasI AATT 2 cut(s) 265, 628
TauI GCSGC 2 cut(s) 160, 506
TfiI GAWTC 5 cut(s) 82, 92, 332, 372, 478
TscAI CASTG 1 cut(s) 331
TseI GCWGC 1 cut(s) 421
TspDTI ATGAA 7 cut(s) 74, 214, 242, 381, 530, 547, 562
TspGWI ACGGA 1 cut(s) 573
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 59
XspI CTAG 3 cut(s) 216, 351, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.