Rh2DG309100

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003162
Physical Location & Seq
Reverse (-)
37843386 .. 37844848
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG309100.1

Sequence Viewer

Length: 678 bp
ATGAACCCGCCACCGCAGCGGCCCACCACCCCAAAAAAGGAGCTCCAACTCCAAGGCCCCCGCCCAGCCCCTCTCAAAGTCAGCAAAGACTCCGTCAAAATCAAGAAGCCGCCTCCCCACCCCCACCTCCGCCAAAACGCACCTCAACAACAGTTCCTGCCGCCGCCGCAGCAGCACCAGGAGCCGGTGGTCATCTACACCGTCTCGCCCAAAGTGATTCACACCTCCGTCAACGAGTTCATGTCCCTCGTCCAACGCCTCACCGGCCCTTCCTCCTCTCCCCCCGGCGACCTCTCCCCCGCCGCCCGCCTCGCCTCCATTGAGAAAACCAGCCCCTCTTCCGATCAGAAGCACTTCCTGCCCGTAAATACCACCACAGCCACCGCCGCCATTGACGACGACTTTATGGATAGTATTCTGGAGGGTATTGACTTGATGGGTCAGTTCCCGGGGATTCTGTCGCCGGCGCCGGCCACCATGCCGCCGATCCCAGCTGGGTTCTTCTCTCCGGCCGCCGAAGACCCGCAAAACTTCAACTGGCAAGGCGCCAACAACATCAACAGCGGCTTCAATAGTTTCATGCCGAGCCCTTCCTCGAATTCGGCTCTGTTTTCGGCTCCTCTGGTTTCTCCGAGCCCTTCTTCGTGGGACCTCTTCAACAATTTCTTGGACTTCTAG

Protein Analysis

225

Amino Acids

24.35

Weight (kDa)

6.18

Isoelectric Point (pI)

75.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 67 - 94 1.4e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 466, 545
AclWI GGATC 1 cut(s) 481
AcoI YGGCCR 2 cut(s) 471, 510
AcsI RAATTY 1 cut(s) 598
AcyI GRCGYC 2 cut(s) 467, 546
AfiI CCNNNNNNNGG 2 cut(s) 37, 184
AgsI TTSAA 3 cut(s) 535, 571, 658
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 2 cut(s) 43, 494
AluI AGCT 2 cut(s) 43, 494
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 1 cut(s) 481
AlwNI CAGNNNCTG 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 448
AoxI GGCC 5 cut(s) 20, 55, 265, 471, 510
ApeKI GCWGC 3 cut(s) 16, 169, 172
ApoI RAATTY 1 cut(s) 598
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
Asp700I GAANNNNTTC 1 cut(s) 353
AspLEI GCGC 2 cut(s) 469, 548
AspS9I GGNCC 4 cut(s) 21, 56, 266, 649
AsuC2I CCSGG 3 cut(s) 285, 449, 450
AsuHPI GGTGA 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 448
AvaII GGWCC 1 cut(s) 649
BanI GGYRCC 2 cut(s) 466, 545
BanII GRGCYC 3 cut(s) 45, 590, 638
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 28, 181, 184
BccI CCATC 1 cut(s) 430
BciT130I CCWGG 1 cut(s) 179
BcnI CCSGG 3 cut(s) 285, 449, 450
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 1 cut(s) 676
BfoI RGCGCY 2 cut(s) 470, 549
BglI GCCNNNNNGGC 1 cut(s) 264
Bme1390I CCNGG 4 cut(s) 179, 285, 449, 450
Bme18I GGWCC 1 cut(s) 649
BmeT110I CYCGRG 1 cut(s) 448
BmgT120I GGNCC 4 cut(s) 21, 56, 266, 649
BmiI GGNNCC 6 cut(s) 58, 183, 468, 547, 618, 650
BmrFI CCNGG 4 cut(s) 179, 285, 449, 450
BpiI GAAGAC 1 cut(s) 525
BpmI CTGGAG 1 cut(s) 440
BpuMI CCSGG 3 cut(s) 285, 449, 450
BsaHI GRCGYC 2 cut(s) 467, 546
BsaJI CCNNGG 4 cut(s) 52, 283, 448, 449
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 184
Bse118I RCCGGY 4 cut(s) 184, 263, 463, 469
Bse1I ACTGG 1 cut(s) 542
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 4 cut(s) 52, 283, 448, 449
BseLI CCNNNNNNNGG 2 cut(s) 37, 184
BseNI ACTGG 1 cut(s) 542
BseRI GAGGAG 2 cut(s) 265, 609
BseX3I CGGCCG 1 cut(s) 510
BseXI GCAGC 3 cut(s) 28, 181, 184
BseYI CCCAGC 3 cut(s) 64, 490, 494
Bsh1285I CGRYCG 1 cut(s) 513
BshFI GGCC 5 cut(s) 22, 57, 267, 473, 512
BshNI GGYRCC 2 cut(s) 466, 545
BsiEI CGRYCG 1 cut(s) 513
BsiHKAI GWGCWC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 7 cut(s) 185, 264, 285, 449, 464, 470, 509
BslFI GGGAC 2 cut(s) 229, 662
BslI CCNNNNNNNGG 2 cut(s) 37, 184
BsmAI GTCTC 1 cut(s) 208
BsmBI CGTCTC 1 cut(s) 208
BsmFI GGGAC 2 cut(s) 229, 662
BsnI GGCC 5 cut(s) 22, 57, 267, 473, 512
BsoBI CYCGRG 1 cut(s) 448
Bsp1286I GDGCHC 3 cut(s) 45, 590, 638
Bsp143I GATC 2 cut(s) 343, 486
BspANI GGCC 5 cut(s) 22, 57, 267, 473, 512
BspLI GGNNCC 6 cut(s) 58, 183, 468, 547, 618, 650
BspPI GGATC 1 cut(s) 481
BspT107I GGYRCC 2 cut(s) 466, 545
BsrFI RCCGGY 4 cut(s) 184, 263, 463, 469
BsrI ACTGG 1 cut(s) 542
BssAI RCCGGY 4 cut(s) 184, 263, 463, 469
BssECI CCNNGG 4 cut(s) 52, 283, 448, 449
BssMI GATC 2 cut(s) 343, 486
BssNI GRCGYC 2 cut(s) 467, 546
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 153, 202
Bst6I CTCTTC 2 cut(s) 343, 659
BstACI GRCGYC 2 cut(s) 467, 546
BstAPI GCANNNNNTGC 1 cut(s) 358
BstC8I GCNNGC 3 cut(s) 307, 465, 471
BstH2I RGCGCY 2 cut(s) 470, 549
BstHHI GCGC 2 cut(s) 469, 548
BstKTI GATC 2 cut(s) 346, 489
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 2 cut(s) 343, 486
BstMCI CGRYCG 1 cut(s) 513
BstMWI GCNNNNNNNGC 9 cut(s) 16, 166, 169, 172, 181, 264, 311, 358, 386
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 4 cut(s) 177, 283, 447, 448
BstV1I GCAGC 3 cut(s) 28, 181, 184
BstV2I GAAGAC 1 cut(s) 525
BstZI CGGCCG 1 cut(s) 510
BsuRI GGCC 5 cut(s) 22, 57, 267, 473, 512
Cac8I GCNNGC 3 cut(s) 307, 465, 471
CaiI CAGNNNCTG 1 cut(s) 157
CfoI GCGC 2 cut(s) 469, 548
Cfr10I RCCGGY 4 cut(s) 184, 263, 463, 469
Cfr13I GGNCC 4 cut(s) 21, 56, 266, 649
Cfr9I CCCGGG 1 cut(s) 448
CviAII CATG 3 cut(s) 241, 478, 580
DinI GGCGCC 2 cut(s) 468, 547
DpnI GATC 2 cut(s) 345, 488
DpnII GATC 2 cut(s) 343, 486
EaeI YGGCCR 2 cut(s) 471, 510
EagI CGGCCG 1 cut(s) 510
Eam1104I CTCTTC 2 cut(s) 343, 659
EarI CTCTTC 2 cut(s) 343, 659
EciI GGCGGA 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 43
EclXI CGGCCG 1 cut(s) 510
Eco130I CCWWGG 1 cut(s) 52
Eco24I GRGCYC 3 cut(s) 45, 590, 638
Eco47I GGWCC 1 cut(s) 649
Eco52I CGGCCG 1 cut(s) 510
Eco53kI GAGCTC 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 43
EcoO109I RGGNCCY 2 cut(s) 56, 649
EcoRI GAATTC 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 52
EcoT38I GRGCYC 3 cut(s) 45, 590, 638
EgeI GGCGCC 2 cut(s) 468, 547
EheI GGCGCC 2 cut(s) 468, 547
ErhI CCWWGG 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 3 cut(s) 244, 481, 583
FaiI YATR 4 cut(s) 242, 407, 479, 581
FaqI GGGAC 2 cut(s) 229, 662
FatI CATG 3 cut(s) 240, 477, 579
FauI CCCGC 5 cut(s) 15, 68, 307, 314, 531
FriOI GRGCYC 3 cut(s) 45, 590, 638
FspBI CTAG 1 cut(s) 676
GlaI GCGC 2 cut(s) 468, 547
GsaI CCCAGC 3 cut(s) 68, 494, 498
GsuI CTGGAG 1 cut(s) 440
HaeII RGCGCY 2 cut(s) 470, 549
HaeIII GGCC 5 cut(s) 22, 57, 267, 473, 512
HapII CCGG 7 cut(s) 185, 264, 285, 449, 464, 470, 509
HhaI GCGC 2 cut(s) 469, 548
Hin1I GRCGYC 2 cut(s) 467, 546
Hin1II CATG 3 cut(s) 244, 481, 583
Hin6I GCGC 2 cut(s) 467, 546
HinP1I GCGC 2 cut(s) 467, 546
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 3 cut(s) 89, 217, 454
HpaII CCGG 7 cut(s) 185, 264, 285, 449, 464, 470, 509
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 343, 348, 633
Hpy188III TCNNGA 2 cut(s) 103, 419
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 3 cut(s) 279, 600, 648
HpyCH4III ACNGT 2 cut(s) 153, 202
HpyF10VI GCNNNNNNNGC 9 cut(s) 16, 166, 169, 172, 181, 264, 311, 358, 386
Hsp92I GRCGYC 2 cut(s) 467, 546
Hsp92II CATG 3 cut(s) 244, 481, 583
HspAI GCGC 2 cut(s) 467, 546
KasI GGCGCC 2 cut(s) 466, 545
KroI GCCGGC 2 cut(s) 463, 469
KroNI GCCGGC 2 cut(s) 465, 471
Kzo9I GATC 2 cut(s) 343, 486
LmnI GCTCC 4 cut(s) 40, 48, 181, 622
Lsp1109I GCAGC 3 cut(s) 28, 181, 184
MaeI CTAG 1 cut(s) 676
MalI GATC 2 cut(s) 345, 488
MboI GATC 2 cut(s) 343, 486
MboII GAAGA 5 cut(s) 330, 493, 530, 633, 646
MhlI GDGCHC 3 cut(s) 45, 590, 638
MluCI AATT 2 cut(s) 598, 661
Mly113I GGCGCC 2 cut(s) 467, 546
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 2 cut(s) 70, 277
MreI CGCCGGCG 1 cut(s) 463
MroNI GCCGGC 2 cut(s) 463, 469
MroXI GAANNNNTTC 1 cut(s) 353
MspA1I CMGCKG 3 cut(s) 19, 494, 564
MspI CCGG 7 cut(s) 185, 264, 285, 449, 464, 470, 509
MspR9I CCNGG 4 cut(s) 179, 285, 449, 450
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 9 cut(s) 16, 166, 169, 172, 181, 264, 311, 358, 386
NaeI GCCGGC 2 cut(s) 465, 471
NarI GGCGCC 2 cut(s) 467, 546
NciI CCSGG 3 cut(s) 285, 449, 450
NdeII GATC 2 cut(s) 343, 486
NgoMIV GCCGGC 2 cut(s) 463, 469
NlaIII CATG 3 cut(s) 244, 481, 583
NlaIV GGNNCC 6 cut(s) 58, 183, 468, 547, 618, 650
NmeAIII GCCGAG 1 cut(s) 609
PdiI GCCGGC 2 cut(s) 465, 471
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 2 cut(s) 217, 454
PflFI GACNNNGTC 1 cut(s) 92
PleI GAGTC 1 cut(s) 83
PluTI GGCGCC 2 cut(s) 470, 549
PpsI GAGTC 1 cut(s) 83
PpuMI RGGWCCY 1 cut(s) 649
Psp124BI GAGCTC 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 649
Psp6I CCWGG 1 cut(s) 177
PspFI CCCAGC 3 cut(s) 64, 490, 494
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 6 cut(s) 58, 183, 468, 547, 618, 650
PspPI GGNCC 4 cut(s) 21, 56, 266, 649
PspPPI RGGWCCY 1 cut(s) 649
PstNI CAGNNNCTG 1 cut(s) 157
PsyI GACNNNGTC 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 494
SacI GAGCTC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 343, 486
Sau96I GGNCC 4 cut(s) 21, 56, 266, 649
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 4 cut(s) 179, 285, 449, 450
SduI GDGCHC 3 cut(s) 45, 590, 638
SetI ASST 7 cut(s) 45, 129, 145, 227, 294, 496, 654
SfoI GGCGCC 2 cut(s) 468, 547
SgrAI CRCCGGYG 1 cut(s) 463
SinI GGWCC 1 cut(s) 649
SmaI CCCGGG 1 cut(s) 450
Sse9I AATT 2 cut(s) 598, 661
SspDI GGCGCC 2 cut(s) 466, 545
SspMI CTAG 1 cut(s) 676
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 4 cut(s) 177, 283, 447, 448
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 2 cut(s) 153, 202
TaqI TCGA 1 cut(s) 596
TasI AATT 2 cut(s) 598, 661
TfiI GAWTC 2 cut(s) 217, 454
TseI GCWGC 3 cut(s) 16, 169, 172
TspDTI ATGAA 3 cut(s) 17, 229, 568
TspGWI ACGGA 2 cut(s) 82, 217
TspMI CCCGGG 1 cut(s) 448
Tth111I GACNNNGTC 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 649
XapI RAATTY 1 cut(s) 598
XmaI CCCGGG 1 cut(s) 448
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.