Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Forward (+)

2023441 .. 2025113

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G022500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGATTATTCGGCAGGCAAGTCTCCGAGAAGAGAGCTTCAGCTTCAAGGCCCACGTCCTACACCTCTCAGGGTTCATAAAGACTCTCACAAGATCAAGAAGCCTCCAATTGTGCCCCAACCCTCCTCACAACCACCCTCCCAGCAGCCTCATCTCTACCAGCAGCCACGTCAGCCGGTCATAATCTACACCGTGTCCCCGAAGGTCATCCACACAAACCCTAGTGAATTCATGGACCTTGTCCAACGCCTCACGGGCTTAAACTCTTCTTCATCTTCTTCCCCACCTACTCAAAATAATCCTAATAATCCTCCCAATTATGACAATAGCAATAACAATAATTCTCGTGATGATCAAGTGATGAAGACAAGTTCTGCTCAAGATGTTGCGCAAGGGATGGAGATGGACGGTGATGAAGGTGGTGTGAGGCAGAAGGGTTTGTTTCCGGGGATCTTGTCACCGGGGCCCGCTTCGCTCAATCCGATTCCTTCGAACTTCTTCTCTCCACCGTCGGATAGCTTCTTCCATGATTTGAGCCCGGTGCTCCATGGAAACAGGAACTTCATAGAAGGTAATGCTACCCAGTTGGATCGACGATCGAGTCCATTTATGTGGAGACACTCTTCTAATCCCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

213

Amino Acids

23.52

Weight (kDa)

9.52

Isoelectric Point (pI)

72.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	600
Acc16I	TGCGCA	1 cut(s)	390
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	2 cut(s)	458, 597
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	47
AjiI	CACGTC	2 cut(s)	56, 170
AluBI	AGCT	3 cut(s)	37, 43, 519
AluI	AGCT	3 cut(s)	37, 43, 519
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	2 cut(s)	27, 610
AlwI	GGATC	2 cut(s)	458, 597
AoxI	GGCC	2 cut(s)	49, 464
ApaI	GGGCCC	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	145, 163
ApoI	RAATTY	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	4 cut(s)	50, 235, 464, 465
AsuC2I	CCSGG	3 cut(s)	447, 462, 539
AsuHPI	GGTGA	2 cut(s)	422, 450
AsuII	TTCGAA	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	235
BaeGI	GKGCMC	2 cut(s)	117, 468
BanII	GRGCYC	2 cut(s)	468, 539
BauI	CACGAG	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	157, 175
BccI	CCATC	2 cut(s)	391, 397
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	3 cut(s)	447, 462, 539
BcoDI	GTCTC	2 cut(s)	27, 610
BfaI	CTAG	1 cut(s)	222
BglI	GCCNNNNNGGC	1 cut(s)	255
BisI	GCNGC	2 cut(s)	146, 164
BlsI	GCNGC	2 cut(s)	147, 165
Bme1390I	CCNGG	3 cut(s)	447, 462, 539
Bme18I	GGWCC	1 cut(s)	235
BmgBI	CACGTC	2 cut(s)	56, 170
BmgT120I	GGNCC	4 cut(s)	50, 235, 464, 465
BmiI	GGNNCC	2 cut(s)	465, 466
BmrFI	CCNGG	3 cut(s)	447, 462, 539
BmrI	ACTGGG	1 cut(s)	577
BmuI	ACTGGG	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	491
BpuEI	CTTGAG	1 cut(s)	363
BpuMI	CCSGG	3 cut(s)	447, 462, 539
BsaJI	CCNNGG	3 cut(s)	446, 461, 547
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	583
BseDI	CCNNGG	3 cut(s)	446, 461, 547
BseGI	GGATG	2 cut(s)	207, 402
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	583
BseRI	GAGGAG	1 cut(s)	115
BseSI	GKGCMC	2 cut(s)	117, 468
BseXI	GCAGC	2 cut(s)	157, 175
BseYI	CCCAGC	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	599
BshFI	GGCC	2 cut(s)	51, 466
BsiEI	CGRYCG	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	4 cut(s)	176, 446, 461, 539
BslFI	GGGAC	1 cut(s)	181
BsmAI	GTCTC	2 cut(s)	27, 610
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	51, 466
Bsp119I	TTCGAA	1 cut(s)	491
Bsp120I	GGGCCC	1 cut(s)	464
Bsp1286I	GDGCHC	4 cut(s)	117, 468, 539, 546
Bsp143I	GATC	5 cut(s)	93, 352, 450, 589, 596
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	2 cut(s)	51, 466
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	465, 466
BspPI	GGATC	2 cut(s)	458, 597
BspT104I	TTCGAA	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	583
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	446, 461, 547
BssMI	GATC	5 cut(s)	93, 352, 450, 589, 596
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	547
Bst2BI	CACGAG	1 cut(s)	345
Bst4CI	ACNGT	3 cut(s)	193, 410, 510
Bst6I	CTCTTC	3 cut(s)	25, 271, 628
BstBI	TTCGAA	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	16, 468
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	2 cut(s)	207, 402
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	5 cut(s)	96, 355, 453, 592, 599
BstMAI	GTCTC	2 cut(s)	27, 610
BstMBI	GATC	5 cut(s)	93, 352, 450, 589, 596
BstMCI	CGRYCG	1 cut(s)	599
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 255, 472
BstSCI	CCNGG	3 cut(s)	445, 460, 537
BstSLI	GKGCMC	2 cut(s)	117, 468
BstV1I	GCAGC	2 cut(s)	157, 175
BstV2I	GAAGAC	1 cut(s)	371
BstX2I	RGATCY	1 cut(s)	450
BstXI	CCANNNNNNTGG	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	450
BsuRI	GGCC	2 cut(s)	51, 466
BtgI	CCRYGG	1 cut(s)	547
BtrI	CACGTC	2 cut(s)	56, 170
BtsCI	GGATG	2 cut(s)	207, 402
Cac8I	GCNNGC	2 cut(s)	16, 468
CfoI	GCGC	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	4 cut(s)	50, 235, 464, 465
CviAII	CATG	3 cut(s)	232, 527, 548
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	5 cut(s)	95, 354, 452, 591, 598
DpnII	GATC	5 cut(s)	93, 352, 450, 589, 596
DrdI	GACNNNNNNGTC	1 cut(s)	600
DseDI	GACNNNNNNGTC	1 cut(s)	600
Eam1104I	CTCTTC	3 cut(s)	25, 271, 628
EarI	CTCTTC	3 cut(s)	25, 271, 628
Eco130I	CCWWGG	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	468, 539
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	547
EcoT38I	GRGCYC	2 cut(s)	468, 539
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	3 cut(s)	235, 530, 551
FaiI	YATR	8 cut(s)	78, 182, 233, 321, 528, 549, 566, 611
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	3 cut(s)	231, 526, 547
FauI	CCCGC	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	146, 164
FokI	GGATG	2 cut(s)	194, 409
FriOI	GRGCYC	2 cut(s)	468, 539
Fsp4HI	GCNGC	2 cut(s)	146, 164
FspBI	CTAG	1 cut(s)	222
FspI	TGCGCA	1 cut(s)	390
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	2 cut(s)	146, 164
GsaI	CCCAGC	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	51, 466
HapII	CCGG	4 cut(s)	176, 446, 461, 539
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	3 cut(s)	235, 530, 551
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	3 cut(s)	83, 484, 601
HpaII	CCGG	4 cut(s)	176, 446, 461, 539
HphI	GGTGA	2 cut(s)	422, 450
Hpy188I	TCNGA	3 cut(s)	27, 483, 514
Hpy188III	TCNNGA	3 cut(s)	97, 347, 380
Hpy99I	CGWCG	2 cut(s)	514, 597
HpyAV	CCTTC	5 cut(s)	196, 410, 427, 498, 563
HpyCH4III	ACNGT	3 cut(s)	193, 410, 510
HpyCH4IV	ACGT	2 cut(s)	55, 169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 255, 472
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	2 cut(s)	55, 169
Hsp92II	CATG	3 cut(s)	235, 530, 551
HspAI	GCGC	1 cut(s)	389
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	5 cut(s)	93, 352, 450, 589, 596
LmnI	GCTCC	1 cut(s)	549
LpnPI	CCDG	9 cut(s)	55, 155, 173, 189, 459, 474, 541, 552, 596
Lsp1109I	GCAGC	2 cut(s)	157, 175
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	2 cut(s)	55, 169
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	5 cut(s)	95, 354, 452, 591, 598
MboI	GATC	5 cut(s)	93, 352, 450, 589, 596
MboII	GAAGA	9 cut(s)	42, 258, 261, 267, 270, 376, 490, 514, 615
MfeI	CAATTG	1 cut(s)	108
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	4 cut(s)	117, 468, 539, 546
MluCI	AATT	4 cut(s)	108, 227, 316, 340
MlyI	GAGTC	2 cut(s)	77, 610
MmeI	TCCRAC	3 cut(s)	268, 492, 567
MnlI	CCTC	9 cut(s)	75, 114, 133, 136, 148, 159, 260, 321, 420
MroXI	GAANNNNTTC	1 cut(s)	497
MseI	TTAA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	610
MspI	CCGG	4 cut(s)	176, 446, 461, 539
MspR9I	CCNGG	3 cut(s)	447, 462, 539
MunI	CAATTG	1 cut(s)	108
MwoI	GCNNNNNNNGC	3 cut(s)	172, 255, 472
NciI	CCSGG	3 cut(s)	447, 462, 539
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	5 cut(s)	93, 352, 450, 589, 596
NlaIII	CATG	3 cut(s)	235, 530, 551
NlaIV	GGNNCC	2 cut(s)	465, 466
NmuCI	GTSAC	1 cut(s)	456
NsbI	TGCGCA	1 cut(s)	390
NspV	TTCGAA	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	484
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	147, 165
Ple19I	CGATCG	1 cut(s)	599
PleI	GAGTC	2 cut(s)	77, 609
PpsI	GAGTC	2 cut(s)	77, 609
PspFI	CCCAGC	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	465, 466
PspOMI	GGGCCC	1 cut(s)	464
PspPI	GGNCC	4 cut(s)	50, 235, 464, 465
PsuI	RGATCY	1 cut(s)	450
PsyI	GACNNNGTC	1 cut(s)	239
PvuI	CGATCG	1 cut(s)	599
RseI	CAYNNNNRTG	1 cut(s)	610
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	2 cut(s)	146, 164
Sau3AI	GATC	5 cut(s)	93, 352, 450, 589, 596
Sau96I	GGNCC	4 cut(s)	50, 235, 464, 465
SchI	GAGTC	2 cut(s)	77, 610
ScrFI	CCNGG	3 cut(s)	447, 462, 539
SduI	GDGCHC	4 cut(s)	117, 468, 539, 546
SfuI	TTCGAA	1 cut(s)	491
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	610
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
Sse9I	AATT	4 cut(s)	108, 227, 316, 340
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	445, 460, 537
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	3 cut(s)	193, 410, 510
TaiI	ACGT	2 cut(s)	58, 172
TaqI	TCGA	3 cut(s)	491, 592, 599
TasI	AATT	4 cut(s)	108, 227, 316, 340
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	2 cut(s)	145, 163
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	6 cut(s)	65, 220, 261, 377, 429, 553
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	497
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.