Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Forward (+)

93474 .. 94791

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G000100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAACCCCCCGCCGCCACCACCACCCACACCCAAAAAGGAGGTTCAACTCCACGGCCCACGCCCCTCCCCTCTCAAAGTCAACAAAGAATCGGTCAAGATCAAGAAGCCACCACCACACCCACGCCCAGACCCAAACCCAAACCCAAACCAACATGCAGATGTCGAACAGCGCCAGCCAGTGGTGATCTACACGGTGTCTCCTAAAGTCATCCACGCAACAGTGAGTGAGTTCATGTCCTTAGTCCAACGCCTCACCGGCCCTTCCCCTTCGTCCTCCCCCGGCGACGGCGGACTCTCACCGGCTGCAAGACTTGCCTCCATCCACAAAACAAGCCCCAATTCTTCTTCAATTTCAGATCACAATAGGCCCTTGATGCCCACCATCACTACTTCTTACCACGACGACTTCATGGCAAGTATTTTTAATAATCTTGAAGATCAAGGAAGAGGAGATGAAATGGGTCAGTTTTCGGGCATATTGTCTCCTGCCCCGGCGACTTTGCCGCCCATCATCCCAAATGGGTTTTTCTCTCATCAGCATGACGTCCTTAGCAGCCCATTTCACAGTTGGCAGGGAATTGGAAACAACAACATCAATTTCTTGCCTAGCCCTGGCCCTGCTTCAGCCCCTTTGATTTCTCCAAGTCCTTCTTCGTGGGACCTCTTTAACAATTTCTTAGACTACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0008150 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

231

Amino Acids

24.91

Weight (kDa)

6.79

Isoelectric Point (pI)

66.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	549
AccB7I	CCANNNNNTGG	1 cut(s)	181
AciI	CCGC	4 cut(s)	11, 14, 291, 506
AcuI	CTGAAG	1 cut(s)	609
AcyI	GRCGYC	1 cut(s)	546
AfiI	CCNNNNNNNGG	3 cut(s)	181, 287, 614
AgsI	TTSAA	3 cut(s)	47, 351, 437
AjnI	CCWGG	1 cut(s)	613
AjuI	GAANNNNNNNTTGG	2 cut(s)	637, 669
Alw26I	GTCTC	2 cut(s)	204, 489
AoxI	GGCC	4 cut(s)	55, 259, 368, 616
ApeKI	GCWGC	2 cut(s)	305, 555
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	5 cut(s)	56, 260, 369, 617, 661
AsuC2I	CCSGG	2 cut(s)	282, 494
AsuHPI	GGTGA	3 cut(s)	196, 247, 291
AvaII	GGWCC	1 cut(s)	661
BbvI	GCAGC	2 cut(s)	292, 567
BccI	CCATC	3 cut(s)	329, 392, 518
BceAI	ACGGC	2 cut(s)	70, 304
BciT130I	CCWGG	1 cut(s)	615
BcnI	CCSGG	2 cut(s)	282, 494
BcoDI	GTCTC	2 cut(s)	204, 489
BfaI	CTAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	175
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	4 cut(s)	14, 306, 506, 556
BlsI	GCNGC	4 cut(s)	15, 307, 507, 557
Bme1390I	CCNGG	3 cut(s)	282, 494, 615
Bme18I	GGWCC	1 cut(s)	661
BmgT120I	GGNCC	5 cut(s)	56, 260, 369, 617, 661
BmiI	GGNNCC	1 cut(s)	662
BmrFI	CCNGG	3 cut(s)	282, 494, 615
BmsI	GCATC	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	551
BpuMI	CCSGG	2 cut(s)	282, 494
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	4 cut(s)	52, 280, 492, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 287, 614
Bse118I	RCCGGY	2 cut(s)	257, 301
Bse1I	ACTGG	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	4 cut(s)	52, 280, 492, 613
BseGI	GGATG	3 cut(s)	210, 321, 513
BseLI	CCNNNNNNNGG	3 cut(s)	181, 287, 614
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	465
BseXI	GCAGC	2 cut(s)	292, 567
BshFI	GGCC	4 cut(s)	57, 261, 370, 618
BsiSI	CCGG	4 cut(s)	258, 282, 302, 494
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	3 cut(s)	181, 287, 614
BsmAI	GTCTC	2 cut(s)	204, 489
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	4 cut(s)	57, 261, 370, 618
Bsp143I	GATC	4 cut(s)	99, 186, 358, 439
BspACI	CCGC	4 cut(s)	11, 14, 291, 506
BspANI	GGCC	4 cut(s)	57, 261, 370, 618
BspLI	GGNNCC	1 cut(s)	662
BsrFI	RCCGGY	2 cut(s)	257, 301
BsrI	ACTGG	1 cut(s)	179
BssAI	RCCGGY	2 cut(s)	257, 301
BssECI	CCNNGG	4 cut(s)	52, 280, 492, 613
BssMI	GATC	4 cut(s)	99, 186, 358, 439
BssNI	GRCGYC	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	3 cut(s)	196, 223, 569
Bst6I	CTCTTC	1 cut(s)	442
BstACI	GRCGYC	1 cut(s)	546
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	3 cut(s)	241, 551, 679
BstDSI	CCRYGG	1 cut(s)	52
BstF5I	GGATG	3 cut(s)	210, 321, 513
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	4 cut(s)	102, 189, 361, 442
BstMAI	GTCTC	2 cut(s)	204, 489
BstMBI	GATC	4 cut(s)	99, 186, 358, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	258, 314, 376
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	3 cut(s)	280, 492, 613
BstV1I	GCAGC	2 cut(s)	292, 567
BsuRI	GGCC	4 cut(s)	57, 261, 370, 618
BtgI	CCRYGG	1 cut(s)	52
BtsCI	GGATG	3 cut(s)	210, 321, 513
BtsIMutI	CAGTG	2 cut(s)	186, 228
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	1 cut(s)	174
Cfr10I	RCCGGY	2 cut(s)	257, 301
Cfr13I	GGNCC	5 cut(s)	56, 260, 369, 617, 661
CviAII	CATG	4 cut(s)	155, 235, 412, 542
DdeI	CTNAG	3 cut(s)	241, 551, 679
DpnI	GATC	4 cut(s)	101, 188, 360, 441
DpnII	GATC	4 cut(s)	99, 186, 358, 439
Eam1104I	CTCTTC	1 cut(s)	442
EarI	CTCTTC	1 cut(s)	442
EciI	GGCGGA	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	661
Eco57I	CTGAAG	1 cut(s)	609
EcoO109I	RGGNCCY	2 cut(s)	369, 661
EcoRII	CCWGG	1 cut(s)	613
FaeI	CATG	4 cut(s)	158, 238, 415, 545
FaiI	YATR	5 cut(s)	156, 236, 413, 479, 543
FalI	AAGNNNNNCTT	2 cut(s)	637, 669
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	4 cut(s)	154, 234, 411, 541
FauI	CCCGC	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	14, 306, 506, 556
FokI	GGATG	3 cut(s)	197, 308, 500
Fsp4HI	GCNGC	4 cut(s)	14, 306, 506, 556
FspBI	CTAG	1 cut(s)	609
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	4 cut(s)	14, 306, 506, 556
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	4 cut(s)	57, 261, 370, 618
HapII	CCGG	4 cut(s)	258, 282, 302, 494
HhaI	GCGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	4 cut(s)	158, 238, 415, 545
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	89, 294
HpaII	CCGG	4 cut(s)	258, 282, 302, 494
HphI	GGTGA	3 cut(s)	196, 247, 291
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	3 cut(s)	97, 103, 434
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	2 cut(s)	290, 407
HpyAV	CCTTC	3 cut(s)	273, 279, 660
HpyCH4III	ACNGT	3 cut(s)	196, 223, 569
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	2 cut(s)	158, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	258, 314, 376
HpyF3I	CTNAG	3 cut(s)	241, 551, 679
HpySE526I	ACGT	1 cut(s)	546
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	4 cut(s)	158, 238, 415, 545
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	4 cut(s)	99, 186, 358, 439
Lsp1109I	GCAGC	2 cut(s)	292, 567
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	1 cut(s)	546
MalI	GATC	4 cut(s)	101, 188, 360, 441
MboI	GATC	4 cut(s)	99, 186, 358, 439
MboII	GAAGA	5 cut(s)	336, 339, 449, 459, 645
MluCI	AATT	5 cut(s)	340, 351, 579, 598, 673
MlyI	GAGTC	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	8 cut(s)	34, 76, 81, 263, 286, 328, 443, 674
MseI	TTAA	2 cut(s)	426, 669
MslI	CAYNNNNRTG	2 cut(s)	159, 540
MspI	CCGG	4 cut(s)	258, 282, 302, 494
MspR9I	CCNGG	3 cut(s)	282, 494, 615
MvaI	CCWGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	3 cut(s)	258, 314, 376
NciI	CCSGG	2 cut(s)	282, 494
NdeII	GATC	4 cut(s)	99, 186, 358, 439
NlaIII	CATG	4 cut(s)	158, 238, 415, 545
NlaIV	GGNNCC	1 cut(s)	662
NspI	RCATGY	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	4 cut(s)	15, 307, 507, 557
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PpuMI	RGGWCCY	1 cut(s)	661
Psp5II	RGGWCCY	1 cut(s)	661
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	1 cut(s)	662
PspPI	GGNCC	5 cut(s)	56, 260, 369, 617, 661
PspPPI	RGGWCCY	1 cut(s)	661
RseI	CAYNNNNRTG	2 cut(s)	159, 540
SaqAI	TTAA	2 cut(s)	426, 669
SatI	GCNGC	4 cut(s)	14, 306, 506, 556
Sau3AI	GATC	4 cut(s)	99, 186, 358, 439
Sau96I	GGNCC	5 cut(s)	56, 260, 369, 617, 661
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	3 cut(s)	282, 494, 615
SetI	ASST	3 cut(s)	45, 549, 666
SfaNI	GCATC	1 cut(s)	366
SinI	GGWCC	1 cut(s)	661
SmiMI	CAYNNNNRTG	2 cut(s)	159, 540
Sse9I	AATT	5 cut(s)	340, 351, 579, 598, 673
SsiI	CCGC	4 cut(s)	11, 14, 291, 506
SspMI	CTAG	1 cut(s)	609
StyD4I	CCNGG	3 cut(s)	280, 492, 613
TaaI	ACNGT	3 cut(s)	196, 223, 569
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	1 cut(s)	165
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	5 cut(s)	340, 351, 579, 598, 673
TauI	GCSGC	2 cut(s)	16, 508
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	426, 669
Tru9I	TTAA	2 cut(s)	426, 669
TscAI	CASTG	2 cut(s)	186, 228
TseI	GCWGC	2 cut(s)	305, 555
TspDTI	ATGAA	4 cut(s)	17, 223, 400, 471
TspRI	CASTG	2 cut(s)	186, 228
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	661
XceI	RCATGY	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	567
XspI	CTAG	1 cut(s)	609
ZraI	GACGTC	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.