Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Reverse (-)

31348025 .. 31348825

Gene Structure 801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018529

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGTCAATACTGCTGGCTTCAAACTCTTCTACATCTATTGTCATTTCCTTCTCAAACCCAAATCGCTCCAATACCCTCTTAACACCACCAGCACGGCAACCAGATCTCCTCCTCCTTCCGCCCCAACCACAATGAACCCGCCACCGCAGCGGCCCACCACCCCAAAAAAGGAGCTCCAACTCCAAGGCCCCCGCCCCGCCCCTCTCAAAGTCAGCAAAGACTCCGTCAAAATCAAGAAGCCGCCTCCCCACCCCCACCTCCGCCAAAACCCACCTCAACAACAGTTCCAGCCGCCGCAGCAGCACCAGGAGCCGCTGGTCATCTACACCGTCTCGCCCAAAGTGATTCACGCCTCCGTCAACGAGTTCATGTCCCTCGTCCAACGCCTCACCGGCCCTTCCTCCTCTCCCCCCGGCGACCTCTCCCCCGCCGCCCGCCTCGCCTCCATCGAGAAAACCAGCCCCTCTTCCGATCACAAGCAGTTCCCGCCCGTAAATACCACCACAACCACCGCCGCCTTTGACGACGACGTTTTGGATAGTATTATGGAGGGTATTGACTTGATGGGTCAGTTCCCCGGGATTCTGTCGCCGGCGCCGGCCACCATGCCGCCGATCCCAGCTGGGTTCTTCTCTCCGGACGTCGAAGACCCGCAAAACTTCAACTGGCAAGGCGCCAACAGCAGCGGCTTCAATAATTTCATGCCGAGCCCTTCCTCGAATTCGGCTCTGTTTTCGGCTCCTCTGGTTTCTCCGAGCCCTTCTTCGTGGGACCTCTTCAGCAATTTCTTGGGCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0008150 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

267

Amino Acids

28.92

Weight (kDa)

8.65

Isoelectric Point (pI)

72.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	110 - 137	3.2e-12	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	645
AccB1I	GGYRCC	2 cut(s)	595, 674
AccIII	TCCGGA	1 cut(s)	637
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	1 cut(s)	721
AcuI	CTGAAG	1 cut(s)	763
AcyI	GRCGYC	3 cut(s)	596, 642, 675
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	22, 664, 694
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	2 cut(s)	175, 623
AluI	AGCT	2 cut(s)	175, 623
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	337
AlwI	GGATC	1 cut(s)	610
Ama87I	CYCGRG	1 cut(s)	578
Aor13HI	TCCGGA	1 cut(s)	637
AoxI	GGCC	4 cut(s)	152, 187, 394, 600
ApeKI	GCWGC	4 cut(s)	148, 298, 301, 684
ApoI	RAATTY	1 cut(s)	721
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
AspLEI	GCGC	2 cut(s)	598, 677
AspS9I	GGNCC	4 cut(s)	153, 188, 395, 772
AsuC2I	CCSGG	3 cut(s)	414, 579, 580
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	772
BanI	GGYRCC	2 cut(s)	595, 674
BanII	GRGCYC	3 cut(s)	177, 713, 761
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	4 cut(s)	160, 310, 313, 696
BccI	CCATC	2 cut(s)	455, 559
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	3 cut(s)	414, 579, 580
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	1 cut(s)	799
BfoI	RGCGCY	2 cut(s)	599, 678
BglI	GCCNNNNNGGC	1 cut(s)	393
BglII	AGATCT	1 cut(s)	104
Bme1390I	CCNGG	4 cut(s)	308, 414, 579, 580
Bme18I	GGWCC	1 cut(s)	772
BmeT110I	CYCGRG	1 cut(s)	578
BmgT120I	GGNCC	4 cut(s)	153, 188, 395, 772
BmiI	GGNNCC	6 cut(s)	190, 312, 597, 676, 741, 773
BmrFI	CCNGG	4 cut(s)	308, 414, 579, 580
BpiI	GAAGAC	1 cut(s)	654
BpuMI	CCSGG	3 cut(s)	414, 579, 580
BsaHI	GRCGYC	3 cut(s)	596, 642, 675
BsaJI	CCNNGG	4 cut(s)	184, 412, 577, 578
BsaWI	WCCGGW	1 cut(s)	637
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse118I	RCCGGY	3 cut(s)	392, 592, 598
Bse1I	ACTGG	1 cut(s)	671
BseAI	TCCGGA	1 cut(s)	637
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	4 cut(s)	184, 412, 577, 578
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	671
BseRI	GAGGAG	4 cut(s)	99, 102, 394, 732
BseXI	GCAGC	4 cut(s)	160, 310, 313, 696
BseYI	CCCAGC	2 cut(s)	619, 623
BshFI	GGCC	4 cut(s)	154, 189, 396, 602
BshNI	GGYRCC	2 cut(s)	595, 674
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	578
BsiSI	CCGG	6 cut(s)	393, 414, 579, 593, 599, 638
BslFI	GGGAC	2 cut(s)	358, 785
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	337
BsmBI	CGTCTC	1 cut(s)	337
BsmFI	GGGAC	2 cut(s)	358, 785
BsnI	GGCC	4 cut(s)	154, 189, 396, 602
BsoBI	CYCGRG	1 cut(s)	578
Bsp1286I	GDGCHC	3 cut(s)	177, 713, 761
Bsp13I	TCCGGA	1 cut(s)	637
Bsp143I	GATC	3 cut(s)	104, 472, 615
BspANI	GGCC	4 cut(s)	154, 189, 396, 602
BspEI	TCCGGA	1 cut(s)	637
BspLI	GGNNCC	6 cut(s)	190, 312, 597, 676, 741, 773
BspPI	GGATC	1 cut(s)	610
BspT107I	GGYRCC	2 cut(s)	595, 674
BsrFI	RCCGGY	3 cut(s)	392, 592, 598
BsrI	ACTGG	1 cut(s)	671
BssAI	RCCGGY	3 cut(s)	392, 592, 598
BssECI	CCNNGG	4 cut(s)	184, 412, 577, 578
BssMI	GATC	3 cut(s)	104, 472, 615
BssNI	GRCGYC	3 cut(s)	596, 642, 675
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	285, 331
Bst6I	CTCTTC	3 cut(s)	32, 472, 782
BstACI	GRCGYC	3 cut(s)	596, 642, 675
BstC8I	GCNNGC	4 cut(s)	16, 436, 594, 600
BstH2I	RGCGCY	2 cut(s)	599, 678
BstHHI	GCGC	2 cut(s)	598, 677
BstKTI	GATC	3 cut(s)	107, 475, 618
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	3 cut(s)	104, 472, 615
BstMWI	GCNNNNNNNGC	8 cut(s)	148, 298, 301, 310, 393, 440, 487, 681
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	4 cut(s)	306, 412, 577, 578
BstV1I	GCAGC	4 cut(s)	160, 310, 313, 696
BstV2I	GAAGAC	1 cut(s)	654
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	4 cut(s)	154, 189, 396, 602
Cac8I	GCNNGC	4 cut(s)	16, 436, 594, 600
CfoI	GCGC	2 cut(s)	598, 677
Cfr10I	RCCGGY	3 cut(s)	392, 592, 598
Cfr13I	GGNCC	4 cut(s)	153, 188, 395, 772
Cfr9I	CCCGGG	1 cut(s)	578
CviAII	CATG	3 cut(s)	370, 607, 703
DinI	GGCGCC	2 cut(s)	597, 676
DpnI	GATC	3 cut(s)	106, 474, 617
DpnII	GATC	3 cut(s)	104, 472, 615
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	3 cut(s)	32, 472, 782
EarI	CTCTTC	3 cut(s)	32, 472, 782
EciI	GGCGGA	2 cut(s)	109, 251
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	184
Eco24I	GRGCYC	3 cut(s)	177, 713, 761
Eco47I	GGWCC	1 cut(s)	772
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	763
Eco88I	CYCGRG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	175
EcoO109I	RGGNCCY	2 cut(s)	188, 772
EcoRI	GAATTC	1 cut(s)	721
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	184
EcoT38I	GRGCYC	3 cut(s)	177, 713, 761
EgeI	GGCGCC	2 cut(s)	597, 676
EheI	GGCGCC	2 cut(s)	597, 676
ErhI	CCWWGG	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	3 cut(s)	373, 610, 706
FaiI	YATR	4 cut(s)	371, 548, 608, 704
FaqI	GGGAC	2 cut(s)	358, 785
FatI	CATG	3 cut(s)	369, 606, 702
FauI	CCCGC	7 cut(s)	147, 200, 205, 436, 443, 495, 660
FriOI	GRGCYC	3 cut(s)	177, 713, 761
FspBI	CTAG	1 cut(s)	799
GlaI	GCGC	2 cut(s)	597, 676
GsaI	CCCAGC	2 cut(s)	623, 627
HaeII	RGCGCY	2 cut(s)	599, 678
HaeIII	GGCC	4 cut(s)	154, 189, 396, 602
HapII	CCGG	6 cut(s)	393, 414, 579, 593, 599, 638
HhaI	GCGC	2 cut(s)	598, 677
Hin1I	GRCGYC	3 cut(s)	596, 642, 675
Hin1II	CATG	3 cut(s)	373, 610, 706
Hin6I	GCGC	2 cut(s)	596, 675
HinP1I	GCGC	2 cut(s)	596, 675
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	3 cut(s)	221, 346, 583
HpaII	CCGG	6 cut(s)	393, 414, 579, 593, 599, 638
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	2 cut(s)	472, 756
Hpy188III	TCNNGA	3 cut(s)	235, 451, 638
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	3 cut(s)	530, 533, 647
HpyAV	CCTTC	5 cut(s)	59, 126, 408, 723, 771
HpyCH4III	ACNGT	2 cut(s)	285, 331
HpyCH4IV	ACGT	2 cut(s)	531, 642
HpyF10VI	GCNNNNNNNGC	8 cut(s)	148, 298, 301, 310, 393, 440, 487, 681
HpySE526I	ACGT	2 cut(s)	531, 642
Hsp92I	GRCGYC	3 cut(s)	596, 642, 675
Hsp92II	CATG	3 cut(s)	373, 610, 706
HspAI	GCGC	2 cut(s)	596, 675
KasI	GGCGCC	2 cut(s)	595, 674
Kpn2I	TCCGGA	1 cut(s)	637
KroI	GCCGGC	2 cut(s)	592, 598
KroNI	GCCGGC	2 cut(s)	594, 600
Kzo9I	GATC	3 cut(s)	104, 472, 615
LmnI	GCTCC	5 cut(s)	72, 172, 180, 310, 745
Lsp1109I	GCAGC	4 cut(s)	160, 310, 313, 696
MaeI	CTAG	1 cut(s)	799
MaeII	ACGT	2 cut(s)	531, 642
MalI	GATC	3 cut(s)	106, 474, 617
MboI	GATC	3 cut(s)	104, 472, 615
MboII	GAAGA	6 cut(s)	19, 459, 622, 659, 756, 769
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	3 cut(s)	177, 713, 761
MluCI	AATT	3 cut(s)	697, 721, 784
Mly113I	GGCGCC	2 cut(s)	596, 675
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	2 cut(s)	202, 406
MreI	CGCCGGCG	1 cut(s)	592
MroI	TCCGGA	1 cut(s)	637
MroNI	GCCGGC	2 cut(s)	592, 598
MseI	TTAA	1 cut(s)	81
MspA1I	CMGCKG	4 cut(s)	151, 316, 623, 687
MspI	CCGG	6 cut(s)	393, 414, 579, 593, 599, 638
MspR9I	CCNGG	4 cut(s)	308, 414, 579, 580
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	8 cut(s)	148, 298, 301, 310, 393, 440, 487, 681
NaeI	GCCGGC	2 cut(s)	594, 600
NarI	GGCGCC	2 cut(s)	596, 675
NciI	CCSGG	3 cut(s)	414, 579, 580
NdeII	GATC	3 cut(s)	104, 472, 615
NgoMIV	GCCGGC	2 cut(s)	592, 598
NlaIII	CATG	3 cut(s)	373, 610, 706
NlaIV	GGNNCC	6 cut(s)	190, 312, 597, 676, 741, 773
NmeAIII	GCCGAG	1 cut(s)	732
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PdiI	GCCGGC	2 cut(s)	594, 600
PfeI	GAWTC	2 cut(s)	346, 583
PflFI	GACNNNGTC	1 cut(s)	224
PleI	GAGTC	1 cut(s)	215
PluTI	GGCGCC	2 cut(s)	599, 678
PpsI	GAGTC	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	772
Psp124BI	GAGCTC	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	772
Psp6I	CCWGG	1 cut(s)	306
PspFI	CCCAGC	2 cut(s)	619, 623
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	6 cut(s)	190, 312, 597, 676, 741, 773
PspPI	GGNCC	4 cut(s)	153, 188, 395, 772
PspPPI	RGGWCCY	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	104
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	623
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	3 cut(s)	104, 472, 615
Sau96I	GGNCC	4 cut(s)	153, 188, 395, 772
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	4 cut(s)	308, 414, 579, 580
SduI	GDGCHC	3 cut(s)	177, 713, 761
SetI	ASST	8 cut(s)	177, 261, 277, 423, 534, 625, 645, 777
SfoI	GGCGCC	2 cut(s)	597, 676
SgrAI	CRCCGGYG	1 cut(s)	592
SinI	GGWCC	1 cut(s)	772
SmaI	CCCGGG	1 cut(s)	580
Sse9I	AATT	3 cut(s)	697, 721, 784
SspDI	GGCGCC	2 cut(s)	595, 674
SspMI	CTAG	1 cut(s)	799
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	4 cut(s)	306, 412, 577, 578
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	285, 331
TaiI	ACGT	2 cut(s)	534, 645
TaqI	TCGA	3 cut(s)	450, 645, 719
TasI	AATT	3 cut(s)	697, 721, 784
TauI	GCSGC	9 cut(s)	154, 244, 295, 298, 316, 434, 518, 613, 690
TfiI	GAWTC	2 cut(s)	346, 583
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseI	GCWGC	4 cut(s)	148, 298, 301, 684
TspDTI	ATGAA	3 cut(s)	149, 358, 691
TspGWI	ACGGA	2 cut(s)	214, 346
TspMI	CCCGGG	1 cut(s)	578
Tth111I	GACNNNGTC	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	1 cut(s)	721
XmaI	CCCGGG	1 cut(s)	578
XspI	CTAG	1 cut(s)	799
ZraI	GACGTC	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.