FvH4_2g14340

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003162
Physical Location & Seq
Forward (+)
12606632 .. 12608219
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14340.t1

Sequence Viewer

Length: 657 bp
ATGGATTTTTCAGACTACCCAACAGGCAAGTCTCCAAGAAAAGAGCTCCAACTCCAGGGTCCACGTCCAGCACCTCTCAAGATTCATAAAGACTCCCACAAGATCAAGAAGCCTCCGGTTGTTCCTCAACCCTCCCAAGCCAATCAGCCTCACCAGCCGCCTCGACAGCCGGTTATAATCTACACAGTCTCCCCCAAGATCATTCACACAAACCCTAGCGACTTCATGAACCTCGTCCAACGCCTCACCGGTTTACCTCCCTCCAATTCTTCTGCTTCTTGTTCTTCCTCTTCTCCTCGAAATGATCATCAGAACACTAATGGCGGCGGTGGGGAATCGACAATGGAGCAGTCTAGGTCTTCGGATCATGAAGGAACGATGGATATGGATGATGATCATGACGATCGTGTTCATGATACTGGTCTTAAGCTGCAGCAAAAGGGTATGTTTCCGGGTATCTTGTCGCCGGCTCCGGGTTCGCTTCCTCCGATTCCTTCAAACTTCTTCTCTCCGCCGGCGGATAGCTTCTTCCATGATTTGAGCCCTGTACTTCATGGTAACAGGAACTTCATAGAAGGTAGCTTCATGCCTAGTCCGTCCAACTTCTTTTCCCCTACTCCATCCATTGACTTGTTCAACAATTTTTCCGATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
VQ

Protein Analysis

219

Amino Acids

23.9

Weight (kDa)

6.17

Isoelectric Point (pI)

68.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 62 - 87 1.7e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AciI CCGC 5 cut(s) 158, 324, 327, 512, 518
AclWI GGATC 1 cut(s) 372
AfaI GTAC 1 cut(s) 549
AfiI CCNNNNNNNGG 2 cut(s) 55, 473
AflII CTTAAG 1 cut(s) 425
AgeI ACCGGT 1 cut(s) 248
AgsI TTSAA 2 cut(s) 498, 637
AjiI CACGTC 1 cut(s) 65
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 4 cut(s) 46, 430, 525, 582
AluI AGCT 4 cut(s) 46, 430, 525, 582
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 2 cut(s) 36, 193
AlwI GGATC 1 cut(s) 372
ApeKI GCWGC 2 cut(s) 430, 433
AsiGI ACCGGT 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 2 cut(s) 453, 474
AsuHPI GGTGA 2 cut(s) 143, 238
AvaII GGWCC 1 cut(s) 59
BanII GRGCYC 2 cut(s) 48, 545
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 2 cut(s) 417, 445
BccI CCATC 2 cut(s) 373, 628
BciT130I CCWGG 1 cut(s) 56
BclI TGATCA 2 cut(s) 304, 394
BcnI CCSGG 2 cut(s) 453, 474
BcoDI GTCTC 2 cut(s) 36, 193
BfaI CTAG 3 cut(s) 216, 354, 591
BfmI CTRYAG 1 cut(s) 431
BfrI CTTAAG 1 cut(s) 425
BisI GCNGC 4 cut(s) 158, 325, 431, 434
BlsI GCNGC 4 cut(s) 159, 326, 432, 435
Bme1390I CCNGG 3 cut(s) 56, 453, 474
Bme18I GGWCC 1 cut(s) 59
BmgBI CACGTC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 60, 471
BmrFI CCNGG 3 cut(s) 56, 453, 474
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 2 cut(s) 453, 474
BsaBI GATNNNNATC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 55
BsaWI WCCGGW 2 cut(s) 115, 248
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 473
Bse118I RCCGGY 4 cut(s) 169, 248, 466, 514
Bse1I ACTGG 1 cut(s) 424
Bse8I GATNNNNATC 1 cut(s) 393
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 2 cut(s) 394, 620
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 55, 473
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 1 cut(s) 285
BseXI GCAGC 2 cut(s) 417, 445
Bsh1285I CGRYCG 1 cut(s) 406
BshTI ACCGGT 1 cut(s) 248
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 7 cut(s) 116, 170, 249, 452, 467, 473, 515
BslI CCNNNNNNNGG 2 cut(s) 55, 473
BsmAI GTCTC 2 cut(s) 36, 193
Bsp1286I GDGCHC 2 cut(s) 48, 545
Bsp143I GATC 6 cut(s) 102, 198, 304, 364, 394, 403
BspACI CCGC 5 cut(s) 158, 324, 327, 512, 518
BspHI TCATGA 4 cut(s) 225, 367, 397, 412
BspLI GGNNCC 2 cut(s) 60, 471
BspMAI CTGCAG 1 cut(s) 435
BspPI GGATC 1 cut(s) 372
BspTI CTTAAG 1 cut(s) 425
BsrFI RCCGGY 4 cut(s) 169, 248, 466, 514
BsrI ACTGG 1 cut(s) 424
BssAI RCCGGY 4 cut(s) 169, 248, 466, 514
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 6 cut(s) 102, 198, 304, 364, 394, 403
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 295
BstAFI CTTAAG 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 468, 516
BstF5I GGATG 2 cut(s) 394, 620
BstKTI GATC 6 cut(s) 105, 201, 307, 367, 397, 406
BstMAI GTCTC 2 cut(s) 36, 193
BstMBI GATC 6 cut(s) 102, 198, 304, 364, 394, 403
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 2 cut(s) 154, 166
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 3 cut(s) 54, 451, 472
BstSFI CTRYAG 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 417, 445
BstV2I GAAGAC 1 cut(s) 351
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 394, 620
Cac8I GCNNGC 2 cut(s) 468, 516
CciI TCATGA 4 cut(s) 225, 367, 397, 412
Cfr10I RCCGGY 4 cut(s) 169, 248, 466, 514
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 548
CspAI ACCGGT 1 cut(s) 248
CviAII CATG 7 cut(s) 226, 368, 398, 413, 533, 554, 586
CviQI GTAC 1 cut(s) 548
DpnI GATC 6 cut(s) 104, 200, 306, 366, 396, 405
DpnII GATC 6 cut(s) 102, 198, 304, 364, 394, 403
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
EciI GGCGGA 2 cut(s) 501, 533
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 2 cut(s) 48, 545
Eco47I GGWCC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 48, 545
FaeI CATG 7 cut(s) 229, 371, 401, 416, 536, 557, 589
FatI CATG 7 cut(s) 225, 367, 397, 412, 532, 553, 585
FbaI TGATCA 2 cut(s) 304, 394
Fnu4HI GCNGC 4 cut(s) 158, 325, 431, 434
FokI GGATG 2 cut(s) 401, 607
FriOI GRGCYC 2 cut(s) 48, 545
Fsp4HI GCNGC 4 cut(s) 158, 325, 431, 434
FspBI CTAG 3 cut(s) 216, 354, 591
GluI GCNGC 4 cut(s) 158, 325, 431, 434
GsuI CTGGAG 1 cut(s) 38
HapII CCGG 7 cut(s) 116, 170, 249, 452, 467, 473, 515
Hin1II CATG 7 cut(s) 229, 371, 401, 416, 536, 557, 589
HinfI GANTC 4 cut(s) 82, 92, 335, 490
HpaII CCGG 7 cut(s) 116, 170, 249, 452, 467, 473, 515
HphI GGTGA 2 cut(s) 143, 238
Hpy166II GTNNAC 2 cut(s) 62, 254
Hpy188I TCNGA 5 cut(s) 13, 312, 364, 489, 649
Hpy188III TCNNGA 6 cut(s) 79, 106, 226, 368, 398, 413
Hpy8I GTNNAC 2 cut(s) 62, 254
HpyAV CCTTC 3 cut(s) 365, 504, 569
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 166
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 7 cut(s) 229, 371, 401, 416, 536, 557, 589
KroI GCCGGC 2 cut(s) 466, 514
KroNI GCCGGC 2 cut(s) 468, 516
Ksp22I TGATCA 2 cut(s) 304, 394
Kzo9I GATC 6 cut(s) 102, 198, 304, 364, 394, 403
LmnI GCTCC 3 cut(s) 51, 346, 475
Lsp1109I GCAGC 2 cut(s) 417, 445
MaeI CTAG 3 cut(s) 216, 354, 591
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 557
MalI GATC 6 cut(s) 104, 200, 306, 366, 396, 405
MboI GATC 6 cut(s) 102, 198, 304, 364, 394, 403
MboII GAAGA 6 cut(s) 261, 276, 282, 351, 496, 520
MhlI GDGCHC 2 cut(s) 48, 545
MluCI AATT 2 cut(s) 265, 640
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 3 cut(s) 73, 262, 624
MreI CGCCGGCG 1 cut(s) 514
MroNI GCCGGC 2 cut(s) 466, 514
MseI TTAA 1 cut(s) 426
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 7 cut(s) 116, 170, 249, 452, 467, 473, 515
MspR9I CCNGG 3 cut(s) 56, 453, 474
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 154, 166
NaeI GCCGGC 2 cut(s) 468, 516
NciI CCSGG 2 cut(s) 453, 474
NdeII GATC 6 cut(s) 102, 198, 304, 364, 394, 403
NgoMIV GCCGGC 2 cut(s) 466, 514
NlaIII CATG 7 cut(s) 229, 371, 401, 416, 536, 557, 589
NlaIV GGNNCC 2 cut(s) 60, 471
PagI TCATGA 4 cut(s) 225, 367, 397, 412
PcsI WCGNNNNNNNCGW 1 cut(s) 485
PdiI GCCGGC 2 cut(s) 468, 516
PfeI GAWTC 3 cut(s) 82, 335, 490
PinAI ACCGGT 1 cut(s) 248
PkrI GCNGC 4 cut(s) 159, 326, 432, 435
Ple19I CGATCG 1 cut(s) 406
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PsiI TTATAA 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 60, 471
PspPI GGNCC 1 cut(s) 59
PstI CTGCAG 1 cut(s) 435
PvuI CGATCG 1 cut(s) 406
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 4 cut(s) 158, 325, 431, 434
Sau3AI GATC 6 cut(s) 102, 198, 304, 364, 394, 403
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 3 cut(s) 56, 453, 474
SduI GDGCHC 2 cut(s) 48, 545
SfcI CTRYAG 1 cut(s) 431
SgrAI CRCCGGYG 1 cut(s) 514
SinI GGWCC 1 cut(s) 59
SmlI CTYRAG 2 cut(s) 77, 425
SmoI CTYRAG 2 cut(s) 77, 425
Sse9I AATT 2 cut(s) 265, 640
SsiI CCGC 5 cut(s) 158, 324, 327, 512, 518
SspMI CTAG 3 cut(s) 216, 354, 591
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 3 cut(s) 54, 451, 472
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 67
TaqI TCGA 3 cut(s) 163, 298, 338
TasI AATT 2 cut(s) 265, 640
TatI WGTACW 1 cut(s) 547
TauI GCSGC 2 cut(s) 160, 327
TfiI GAWTC 3 cut(s) 82, 335, 490
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TseI GCWGC 2 cut(s) 430, 433
TspDTI ATGAA 8 cut(s) 74, 214, 242, 384, 401, 542, 559, 574
TspGWI ACGGA 1 cut(s) 585
Vha464I CTTAAG 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 59
XspI CTAG 3 cut(s) 216, 354, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.