Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002162.1

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Forward (+)

114261 .. 114641

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002162.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ctgcctccccacccccaccctcacctcttccaaaacctacctaaacaacagttccagccgccgcagcaacaccaagagccgatggtcatctacactgtctcgcccaaagtgattcacgactccgttaacgagttcatgtccctcgtccaatgcctcaccggcccttcctcctctccccccggcgacctctcccccaccgcccgcctcgcctccattgagaaaaccagctcctcttccgagcagaagcacttcttgcccttaaataccaccgcagccaccgctgccattgacgacgactttatggatagtattatggagggtattgaccttatgggccagaggagtgaacccagtagttcagccattgataggtttgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0008150 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

126

Amino Acids

13.87

Weight (kDa)

5.02

Isoelectric Point (pI)

68.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	59, 62, 198, 202, 270, 279
AfiI	CCNNNNNNNGG	1 cut(s)	369
AgsI	TTSAA	1 cut(s)	377
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	103
AoxI	GGCC	2 cut(s)	160, 334
ApeKI	GCWGC	3 cut(s)	64, 272, 281
Asp700I	GAANNNNTTC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	161, 334
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	14, 148
BbvI	GCAGC	3 cut(s)	76, 268, 284
BccI	CCATC	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	103
BglI	GCCNNNNNGGC	1 cut(s)	159
BisI	GCNGC	5 cut(s)	59, 62, 65, 273, 282
BlsI	GCNGC	5 cut(s)	60, 63, 66, 274, 283
Bme1390I	CCNGG	1 cut(s)	180
BmgT120I	GGNCC	2 cut(s)	161, 334
BmrFI	CCNGG	1 cut(s)	180
BmrI	ACTGGG	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	178
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	351
BseRI	GAGGAG	3 cut(s)	160, 220, 355
BseXI	GCAGC	3 cut(s)	76, 268, 284
BshFI	GGCC	2 cut(s)	162, 336
BsiSI	CCGG	2 cut(s)	159, 180
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	162, 336
BspACI	CCGC	6 cut(s)	59, 62, 198, 202, 270, 279
BspANI	GGCC	2 cut(s)	162, 336
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	51, 97
Bst6I	CTCTTC	2 cut(s)	32, 238
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	202
BstMAI	GTCTC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	6 cut(s)	64, 159, 206, 253, 278, 281
BstSCI	CCNGG	1 cut(s)	178
BstV1I	GCAGC	3 cut(s)	76, 268, 284
BsuRI	GGCC	2 cut(s)	162, 336
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	161, 334
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	7 cut(s)	58, 79, 162, 228, 275, 336, 362
CviKI_1	RGCY	7 cut(s)	58, 79, 162, 228, 275, 336, 362
Eam1104I	CTCTTC	2 cut(s)	32, 238
EarI	CTCTTC	2 cut(s)	32, 238
FaeI	CATG	1 cut(s)	139
FaiI	YATR	4 cut(s)	137, 302, 314, 332
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	1 cut(s)	135
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	5 cut(s)	59, 62, 65, 273, 282
Fsp4HI	GCNGC	5 cut(s)	59, 62, 65, 273, 282
GluI	GCNGC	5 cut(s)	59, 62, 65, 273, 282
HaeIII	GGCC	2 cut(s)	162, 336
HapII	CCGG	2 cut(s)	159, 180
Hin1II	CATG	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	112, 119
HpaI	GTTAAC	1 cut(s)	127
HpaII	CCGG	2 cut(s)	159, 180
HphI	GGTGA	2 cut(s)	14, 148
Hpy166II	GTNNAC	2 cut(s)	127, 347
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	2 cut(s)	127, 347
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	2 cut(s)	51, 97
HpyF10VI	GCNNNNNNNGC	6 cut(s)	64, 159, 206, 253, 278, 281
Hsp92II	CATG	1 cut(s)	139
KspAI	GTTAAC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	6 cut(s)	68, 172, 193, 238, 350, 364
Lsp1109I	GCAGC	3 cut(s)	76, 268, 284
MboII	GAAGA	2 cut(s)	19, 225
MlyI	GAGTC	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	2 cut(s)	126, 260
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	2 cut(s)	159, 180
MspR9I	CCNGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	6 cut(s)	64, 159, 206, 253, 278, 281
NciI	CCSGG	1 cut(s)	180
NlaIII	CATG	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	5 cut(s)	60, 63, 66, 274, 283
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	161, 334
SaqAI	TTAA	2 cut(s)	126, 260
SatI	GCNGC	5 cut(s)	59, 62, 65, 273, 282
Sau96I	GGNCC	2 cut(s)	161, 334
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	7 cut(s)	27, 39, 43, 189, 230, 330, 374
SsiI	CCGC	6 cut(s)	59, 62, 198, 202, 270, 279
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	51, 97
TauI	GCSGC	2 cut(s)	61, 64
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	126, 260
Tru9I	TTAA	2 cut(s)	126, 260
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	3 cut(s)	64, 272, 281
TspDTI	ATGAA	1 cut(s)	124
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.