Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Reverse (-)

33178702 .. 33179958

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGATTTTTCAGACTACCCAACAGGCAAGTCTCCAAGAAGAGAGCTCCAACTCCAGGGTCCACGTCCAACACCTCTCAAGATTCATAAAGATTCCCACAAGATCAAGAAGCCACCGATTGTTCCTCAACCCTCGCAACCTAATCAGCCTCACCAGCCACCTCGACAACCGGTTATAATCTACACAGTCTCGCCGAAGATCATTCACACAAACCCTAGCGACTTCATGAACCTCGTCCAACGCCTCACCGGACTACCTCGCTCCAATTCTTCTGCTTCTTGTTCTTCCTCGTCTCCTCGAAATGATCAAAACACTCATGGAGGCGGTGGTGAATCGACAATGGAGCAGTCTAGGGCGTTGGATCATGAAGGAATCATGGACATGGATGATGATGATCGTGATCGTGATGCTGGTGTGAAGCAGCAAAAGGGTTTGTTTCCGGGGATCTTGTCGCCAGCTCCGGGTGCGCTTCCTCCGATTCCTTCAAGCTTCTTCTCTCCGGCGGCGGATAGCTTCTTCCATGATTTGAGCCCGGTACTTCATGGTAACAGGAACTTCATAGAAGGTAGCTTCATGCCTAGTCCGTCCAACTTCTTTTCCCCTACTCCGTCCATTGACTTATTCAACAATTTTTCCGATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

214

Amino Acids

23.5

Weight (kDa)

6.43

Isoelectric Point (pI)

69.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	62 - 86	3.5e-12	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
AciI	CCGC	3 cut(s)	324, 503, 506
AclWI	GGATC	2 cut(s)	369, 452
AfaI	GTAC	1 cut(s)	537
AfiI	CCNNNNNNNGG	2 cut(s)	55, 461
AgeI	ACCGGT	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	486, 625
AjiI	CACGTC	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	5 cut(s)	46, 458, 489, 513, 570
AluI	AGCT	5 cut(s)	46, 458, 489, 513, 570
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	3 cut(s)	36, 193, 297
AlwI	GGATC	2 cut(s)	369, 452
ApeKI	GCWGC	1 cut(s)	421
AsiGI	ACCGGT	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	59
AsuC2I	CCSGG	3 cut(s)	441, 462, 533
AsuHPI	GGTGA	3 cut(s)	143, 238, 341
AvaII	GGWCC	1 cut(s)	59
BanII	GRGCYC	2 cut(s)	48, 533
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	433
BciT130I	CCWGG	1 cut(s)	56
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	3 cut(s)	441, 462, 533
BcoDI	GTCTC	3 cut(s)	36, 193, 297
BfaI	CTAG	3 cut(s)	216, 351, 579
BisI	GCNGC	2 cut(s)	422, 504
BlsI	GCNGC	2 cut(s)	423, 505
Bme1390I	CCNGG	4 cut(s)	56, 441, 462, 533
Bme18I	GGWCC	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	4 cut(s)	56, 441, 462, 533
BmsI	GCATC	1 cut(s)	397
BpmI	CTGGAG	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	3 cut(s)	441, 462, 533
BsaBI	GATNNNNATC	2 cut(s)	393, 399
BsaJI	CCNNGG	2 cut(s)	55, 440
BsaWI	WCCGGW	2 cut(s)	169, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 461
Bse118I	RCCGGY	1 cut(s)	169
Bse8I	GATNNNNATC	2 cut(s)	393, 399
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	55, 440
BseGI	GGATG	1 cut(s)	391
BseJI	GATNNNNATC	2 cut(s)	393, 399
BseLI	CCNNNNNNNGG	2 cut(s)	55, 461
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	433
BshTI	ACCGGT	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	6 cut(s)	170, 249, 440, 461, 500, 533
BslI	CCNNNNNNNGG	2 cut(s)	55, 461
BsmAI	GTCTC	3 cut(s)	36, 193, 297
BsmBI	CGTCTC	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	48, 533
Bsp143I	GATC	7 cut(s)	102, 198, 304, 361, 394, 400, 444
BspACI	CCGC	3 cut(s)	324, 503, 506
BspHI	TCATGA	2 cut(s)	225, 364
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	2 cut(s)	369, 452
BsrFI	RCCGGY	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	55, 440
BssMI	GATC	7 cut(s)	102, 198, 304, 361, 394, 400, 444
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	456
BstF5I	GGATG	1 cut(s)	391
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	7 cut(s)	105, 201, 307, 364, 397, 403, 447
BstMAI	GTCTC	3 cut(s)	36, 193, 297
BstMBI	GATC	7 cut(s)	102, 198, 304, 361, 394, 400, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 464
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	4 cut(s)	54, 439, 460, 531
BstV1I	GCAGC	1 cut(s)	433
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BtrI	CACGTC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	456
CciI	TCATGA	2 cut(s)	225, 364
CfoI	GCGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	536
CspAI	ACCGGT	1 cut(s)	169
CviAII	CATG	8 cut(s)	226, 317, 365, 376, 382, 521, 542, 574
CviJI	RGCY	9 cut(s)	46, 112, 148, 157, 458, 489, 513, 531, 570
CviKI_1	RGCY	9 cut(s)	46, 112, 148, 157, 458, 489, 513, 531, 570
CviQI	GTAC	1 cut(s)	536
DpnI	GATC	7 cut(s)	104, 200, 306, 363, 396, 402, 446
DpnII	GATC	7 cut(s)	102, 198, 304, 361, 394, 400, 444
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
EciI	GGCGGA	1 cut(s)	521
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	2 cut(s)	48, 533
Eco47I	GGWCC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	54
EcoT38I	GRGCYC	2 cut(s)	48, 533
Esp3I	CGTCTC	1 cut(s)	297
FaeI	CATG	8 cut(s)	229, 320, 368, 379, 385, 524, 545, 577
FatI	CATG	8 cut(s)	225, 316, 364, 375, 381, 520, 541, 573
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	422, 504
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	2 cut(s)	48, 533
Fsp4HI	GCNGC	2 cut(s)	422, 504
FspBI	CTAG	3 cut(s)	216, 351, 579
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	2 cut(s)	422, 504
GsuI	CTGGAG	1 cut(s)	38
HapII	CCGG	6 cut(s)	170, 249, 440, 461, 500, 533
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	8 cut(s)	229, 320, 368, 379, 385, 524, 545, 577
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	5 cut(s)	82, 92, 332, 372, 478
HpaII	CCGG	6 cut(s)	170, 249, 440, 461, 500, 533
HphI	GGTGA	3 cut(s)	143, 238, 341
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188I	TCNGA	3 cut(s)	13, 477, 637
Hpy188III	TCNNGA	6 cut(s)	79, 106, 226, 365, 398, 404
Hpy8I	GTNNAC	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	362, 492, 557
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 464
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	8 cut(s)	229, 320, 368, 379, 385, 524, 545, 577
HspAI	GCGC	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	7 cut(s)	102, 198, 304, 361, 394, 400, 444
LmnI	GCTCC	4 cut(s)	51, 266, 343, 463
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	3 cut(s)	216, 351, 579
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	7 cut(s)	104, 200, 306, 363, 396, 402, 446
MboI	GATC	7 cut(s)	102, 198, 304, 361, 394, 400, 444
MboII	GAAGA	6 cut(s)	51, 208, 261, 276, 484, 508
MflI	RGATCY	1 cut(s)	444
MhlI	GDGCHC	2 cut(s)	48, 533
MluCI	AATT	2 cut(s)	265, 628
MmeI	TCCRAC	5 cut(s)	73, 92, 262, 339, 612
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	6 cut(s)	170, 249, 440, 461, 500, 533
MspR9I	CCNGG	4 cut(s)	56, 441, 462, 533
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	154, 464
NciI	CCSGG	3 cut(s)	441, 462, 533
NdeII	GATC	7 cut(s)	102, 198, 304, 361, 394, 400, 444
NlaIII	CATG	8 cut(s)	229, 320, 368, 379, 385, 524, 545, 577
NlaIV	GGNNCC	1 cut(s)	60
PagI	TCATGA	2 cut(s)	225, 364
PfeI	GAWTC	5 cut(s)	82, 92, 332, 372, 478
PinAI	ACCGGT	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	423, 505
PsiI	TTATAA	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	444
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	48
SatI	GCNGC	2 cut(s)	422, 504
Sau3AI	GATC	7 cut(s)	102, 198, 304, 361, 394, 400, 444
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	4 cut(s)	56, 441, 462, 533
SduI	GDGCHC	2 cut(s)	48, 533
SfaNI	GCATC	1 cut(s)	397
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	265, 628
SsiI	CCGC	3 cut(s)	324, 503, 506
SspMI	CTAG	3 cut(s)	216, 351, 579
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	4 cut(s)	54, 439, 460, 531
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	3 cut(s)	163, 298, 335
TasI	AATT	2 cut(s)	265, 628
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	5 cut(s)	82, 92, 332, 372, 478
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	7 cut(s)	74, 214, 242, 381, 530, 547, 562
TspGWI	ACGGA	2 cut(s)	573, 597
VpaK11BI	GGWCC	1 cut(s)	59
XspI	CTAG	3 cut(s)	216, 351, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.