Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Reverse (-)

6211296 .. 6212003

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1011800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAACCCAGCGCCACCAGCAAGGCCTCCTCCAACACCCAAAAAGGAGGTACAACTCCAAGGTCCACGCCCTTCCCCTCTCAGAGTCAACAAGGACTCCGTCAAGATCAAGAAGCCACCGCCACACCCCCACCCACATCCACACCCAGCATACACCCAGCATCCCCATCCACCTCCACAGCCGGTGGTGATCTACTCAGTCTCTCCCAAAGTTATCCACGCCACAGAAAACGAGTTTATGTCCTTAGTCCAACGCCTCACCGGCCCTTCCACCTCTCCGCCCTCCTCCTCCGCCGACGGCCTCTCACCGGCTGCAAGGCTCGCCTCCGTACACAAGACAAGCCCTAATTCTTCAACCTCGGATTACAACAAGGTCGTGGCCGGCGCCGCCACCACTAGTACTAGCATTGACGACGACTTCATGACAAGTATTTTCAATAATCTTGAAGCTCAAGGAGGCGGAGGAGGAGGAGGGTCAGTGCAACTTGACGAAATGGGTCAATTTCCGGGCATATTGTCTCCGGCGCCAGCGTCTCTGCCGGCGGTCCCAAGTGGGTTATTCTCACATCAACATCAGCATGACGTCATAAGCAGCCCAATGTTTAATAATTGGATGGGGATGGCCAATAGCCCTGGGCCGGCTTCTGCTTTGGTTTCTCCCAGCCCCTGCTCATGGGACCTCTTCAACCATTTCTTACACTACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0008150 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

236

Amino Acids

24.83

Weight (kDa)

7.25

Isoelectric Point (pI)

66.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	67 - 93	2.2e-10	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	585
AccB1I	GGYRCC	2 cut(s)	383, 523
AciI	CCGC	6 cut(s)	119, 278, 291, 387, 459, 542
AcoI	YGGCCR	2 cut(s)	378, 621
AcyI	GRCGYC	3 cut(s)	384, 524, 582
AfaI	GTAC	3 cut(s)	51, 330, 400
AfiI	CCNNNNNNNGG	3 cut(s)	307, 637, 672
AgsI	TTSAA	4 cut(s)	354, 436, 446, 685
AhlI	ACTAGT	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	1 cut(s)	449
AluI	AGCT	1 cut(s)	449
Alw26I	GTCTC	3 cut(s)	205, 522, 537
AlwNI	CAGNNNCTG	1 cut(s)	666
AoxI	GGCC	6 cut(s)	23, 262, 298, 378, 621, 635
ApeKI	GCWGC	2 cut(s)	311, 591
AspLEI	GCGC	3 cut(s)	13, 386, 526
AspS9I	GGNCC	5 cut(s)	62, 263, 544, 635, 676
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	3 cut(s)	199, 250, 297
AvaII	GGWCC	3 cut(s)	62, 544, 676
BalI	TGGCCA	1 cut(s)	623
BanI	GGYRCC	2 cut(s)	383, 523
BbvI	GCAGC	2 cut(s)	298, 603
BccI	CCATC	3 cut(s)	174, 607, 613
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	633
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	3 cut(s)	205, 522, 537
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	2 cut(s)	396, 402
BfoI	RGCGCY	3 cut(s)	14, 387, 527
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	3 cut(s)	312, 387, 592
BlsI	GCNGC	3 cut(s)	313, 388, 593
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	2 cut(s)	507, 633
Bme18I	GGWCC	3 cut(s)	62, 544, 676
BmgT120I	GGNCC	5 cut(s)	62, 263, 544, 635, 676
BmiI	GGNNCC	4 cut(s)	385, 525, 546, 677
BmrFI	CCNGG	2 cut(s)	507, 633
BmsI	GCATC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	507
BsaHI	GRCGYC	3 cut(s)	384, 524, 582
BsaJI	CCNNGG	4 cut(s)	58, 357, 631, 632
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 462, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 637, 672
Bse118I	RCCGGY	6 cut(s)	181, 260, 307, 380, 538, 637
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	4 cut(s)	58, 357, 631, 632
BseGI	GGATG	5 cut(s)	136, 160, 166, 618, 624
BseLI	CCNNNNNNNGG	3 cut(s)	307, 637, 672
BseMII	CTCAG	2 cut(s)	94, 210
BseRI	GAGGAG	6 cut(s)	18, 274, 277, 477, 480, 483
BseXI	GCAGC	2 cut(s)	298, 603
BseYI	CCCAGC	4 cut(s)	7, 145, 156, 659
BshFI	GGCC	6 cut(s)	25, 264, 300, 380, 623, 637
BshNI	GGYRCC	2 cut(s)	383, 523
BsiSI	CCGG	8 cut(s)	182, 261, 308, 381, 506, 521, 539, 638
BslFI	GGGAC	2 cut(s)	530, 689
BslI	CCNNNNNNNGG	3 cut(s)	307, 637, 672
BsmAI	GTCTC	3 cut(s)	205, 522, 537
BsmBI	CGTCTC	1 cut(s)	537
BsmFI	GGGAC	2 cut(s)	530, 689
BsnI	GGCC	6 cut(s)	25, 264, 300, 380, 623, 637
Bsp143I	GATC	2 cut(s)	105, 189
BspACI	CCGC	6 cut(s)	119, 278, 291, 387, 459, 542
BspANI	GGCC	6 cut(s)	25, 264, 300, 380, 623, 637
BspCNI	CTCAG	2 cut(s)	93, 209
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	4 cut(s)	385, 525, 546, 677
BspT107I	GGYRCC	2 cut(s)	383, 523
BsrFI	RCCGGY	6 cut(s)	181, 260, 307, 380, 538, 637
BssAI	RCCGGY	6 cut(s)	181, 260, 307, 380, 538, 637
BssECI	CCNNGG	4 cut(s)	58, 357, 631, 632
BssMI	GATC	2 cut(s)	105, 189
BssNI	GRCGYC	3 cut(s)	384, 524, 582
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	633
Bst6I	CTCTTC	1 cut(s)	686
BstACI	GRCGYC	3 cut(s)	384, 524, 582
BstC8I	GCNNGC	5 cut(s)	321, 382, 528, 540, 639
BstDEI	CTNAG	3 cut(s)	80, 196, 244
BstF5I	GGATG	5 cut(s)	136, 160, 166, 618, 624
BstH2I	RGCGCY	3 cut(s)	14, 387, 527
BstHHI	GCGC	3 cut(s)	13, 386, 526
BstKTI	GATC	2 cut(s)	108, 192
BstMAI	GTCTC	3 cut(s)	205, 522, 537
BstMBI	GATC	2 cut(s)	105, 189
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 261, 320, 386
BstNI	CCWGG	1 cut(s)	633
BstSCI	CCNGG	2 cut(s)	505, 631
BstV1I	GCAGC	2 cut(s)	298, 603
BsuRI	GGCC	6 cut(s)	25, 264, 300, 380, 623, 637
BtsCI	GGATG	5 cut(s)	136, 160, 166, 618, 624
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	5 cut(s)	321, 382, 528, 540, 639
CaiI	CAGNNNCTG	1 cut(s)	666
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	3 cut(s)	13, 386, 526
Cfr10I	RCCGGY	6 cut(s)	181, 260, 307, 380, 538, 637
Cfr13I	GGNCC	5 cut(s)	62, 263, 544, 635, 676
CseI	GACGC	1 cut(s)	519
Csp6I	GTAC	3 cut(s)	50, 329, 399
CviAII	CATG	3 cut(s)	421, 578, 672
CviQI	GTAC	3 cut(s)	50, 329, 399
DdeI	CTNAG	3 cut(s)	80, 196, 244
DinI	GGCGCC	2 cut(s)	385, 525
DpnI	GATC	2 cut(s)	107, 191
DpnII	GATC	2 cut(s)	105, 189
EaeI	YGGCCR	2 cut(s)	378, 621
Eam1104I	CTCTTC	1 cut(s)	686
EarI	CTCTTC	1 cut(s)	686
EciI	GGCGGA	3 cut(s)	267, 280, 474
Eco130I	CCWWGG	1 cut(s)	58
Eco147I	AGGCCT	1 cut(s)	25
Eco47I	GGWCC	3 cut(s)	62, 544, 676
EcoO109I	RGGNCCY	1 cut(s)	676
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	58
EgeI	GGCGCC	2 cut(s)	385, 525
EheI	GGCGCC	2 cut(s)	385, 525
ErhI	CCWWGG	1 cut(s)	58
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	3 cut(s)	424, 581, 675
FaiI	YATR	7 cut(s)	151, 239, 422, 512, 579, 587, 673
FaqI	GGGAC	2 cut(s)	530, 689
FatI	CATG	3 cut(s)	420, 577, 671
Fnu4HI	GCNGC	3 cut(s)	312, 387, 592
FokI	GGATG	5 cut(s)	123, 147, 153, 625, 631
Fsp4HI	GCNGC	3 cut(s)	312, 387, 592
FspBI	CTAG	2 cut(s)	396, 402
GlaI	GCGC	3 cut(s)	12, 385, 525
GluI	GCNGC	3 cut(s)	312, 387, 592
GsaI	CCCAGC	4 cut(s)	11, 149, 160, 663
HaeII	RGCGCY	3 cut(s)	14, 387, 527
HaeIII	GGCC	6 cut(s)	25, 264, 300, 380, 623, 637
HapII	CCGG	8 cut(s)	182, 261, 308, 381, 506, 521, 539, 638
HgaI	GACGC	1 cut(s)	519
HhaI	GCGC	3 cut(s)	13, 386, 526
Hin1I	GRCGYC	3 cut(s)	384, 524, 582
Hin1II	CATG	3 cut(s)	424, 581, 675
Hin6I	GCGC	3 cut(s)	11, 384, 524
HinP1I	GCGC	3 cut(s)	11, 384, 524
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	84, 95
HpaII	CCGG	8 cut(s)	182, 261, 308, 381, 506, 521, 539, 638
HphI	GGTGA	3 cut(s)	199, 250, 297
Hpy166II	GTNNAC	3 cut(s)	65, 88, 331
Hpy188I	TCNGA	2 cut(s)	83, 361
Hpy188III	TCNNGA	4 cut(s)	103, 109, 421, 443
Hpy8I	GTNNAC	3 cut(s)	65, 88, 331
Hpy99I	CGWCG	2 cut(s)	299, 416
HpyAV	CCTTC	2 cut(s)	81, 276
HpyCH4IV	ACGT	2 cut(s)	582, 702
HpyCH4V	TGCA	2 cut(s)	314, 481
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 261, 320, 386
HpyF3I	CTNAG	3 cut(s)	80, 196, 244
HpySE526I	ACGT	2 cut(s)	582, 702
Hsp92I	GRCGYC	3 cut(s)	384, 524, 582
Hsp92II	CATG	3 cut(s)	424, 581, 675
HspAI	GCGC	3 cut(s)	11, 384, 524
KasI	GGCGCC	2 cut(s)	383, 523
KroI	GCCGGC	3 cut(s)	380, 538, 637
KroNI	GCCGGC	3 cut(s)	382, 540, 639
Kzo9I	GATC	2 cut(s)	105, 189
Lsp1109I	GCAGC	2 cut(s)	298, 603
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	396, 402
MaeII	ACGT	2 cut(s)	582, 702
MalI	GATC	2 cut(s)	107, 191
MboI	GATC	2 cut(s)	105, 189
MboII	GAAGA	2 cut(s)	342, 673
MlsI	TGGCCA	1 cut(s)	623
MluCI	AATT	3 cut(s)	346, 500, 607
MluNI	TGGCCA	1 cut(s)	623
Mly113I	GGCGCC	2 cut(s)	384, 524
MlyI	GAGTC	2 cut(s)	89, 93
MmeI	TCCRAC	2 cut(s)	56, 274
Mox20I	TGGCCA	1 cut(s)	623
MroNI	GCCGGC	3 cut(s)	380, 538, 637
MscI	TGGCCA	1 cut(s)	623
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	623
MspI	CCGG	8 cut(s)	182, 261, 308, 381, 506, 521, 539, 638
MspR9I	CCNGG	2 cut(s)	507, 633
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	4 cut(s)	17, 261, 320, 386
NaeI	GCCGGC	3 cut(s)	382, 540, 639
NarI	GGCGCC	2 cut(s)	384, 524
NciI	CCSGG	1 cut(s)	507
NdeII	GATC	2 cut(s)	105, 189
NgoMIV	GCCGGC	3 cut(s)	380, 538, 637
NlaIII	CATG	3 cut(s)	424, 581, 675
NlaIV	GGNNCC	4 cut(s)	385, 525, 546, 677
PagI	TCATGA	1 cut(s)	420
PasI	CCCWGGG	1 cut(s)	632
PceI	AGGCCT	1 cut(s)	25
PdiI	GCCGGC	3 cut(s)	382, 540, 639
PflFI	GACNNNGTC	1 cut(s)	98
PkrI	GCNGC	3 cut(s)	313, 388, 593
PleI	GAGTC	2 cut(s)	89, 92
PluTI	GGCGCC	2 cut(s)	387, 527
PpsI	GAGTC	2 cut(s)	89, 92
PpuMI	RGGWCCY	1 cut(s)	676
Psp5II	RGGWCCY	1 cut(s)	676
Psp6I	CCWGG	1 cut(s)	631
PspFI	CCCAGC	4 cut(s)	7, 145, 156, 659
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	4 cut(s)	385, 525, 546, 677
PspPI	GGNCC	5 cut(s)	62, 263, 544, 635, 676
PspPPI	RGGWCCY	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	666
PsyI	GACNNNGTC	1 cut(s)	98
RsaI	GTAC	3 cut(s)	51, 330, 400
RsaNI	GTAC	3 cut(s)	50, 329, 399
RseI	CAYNNNNRTG	1 cut(s)	576
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	3 cut(s)	312, 387, 592
Sau3AI	GATC	2 cut(s)	105, 189
Sau96I	GGNCC	5 cut(s)	62, 263, 544, 635, 676
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	2 cut(s)	89, 93
ScrFI	CCNGG	2 cut(s)	507, 633
SfaNI	GCATC	1 cut(s)	169
SfoI	GGCGCC	2 cut(s)	385, 525
SinI	GGWCC	3 cut(s)	62, 544, 676
SmiMI	CAYNNNNRTG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	3 cut(s)	346, 500, 607
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	6 cut(s)	119, 278, 291, 387, 459, 542
SspDI	GGCGCC	2 cut(s)	383, 523
SspMI	CTAG	2 cut(s)	396, 402
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	505, 631
StyI	CCWWGG	1 cut(s)	58
TaiI	ACGT	2 cut(s)	585, 705
TasI	AATT	3 cut(s)	346, 500, 607
TatI	WGTACW	1 cut(s)	398
TauI	GCSGC	1 cut(s)	389
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	483
TseI	GCWGC	2 cut(s)	311, 591
TspDTI	ATGAA	2 cut(s)	17, 409
TspGWI	ACGGA	2 cut(s)	88, 316
TspRI	CASTG	1 cut(s)	483
Tth111I	GACNNNGTC	1 cut(s)	98
VpaK11BI	GGWCC	3 cut(s)	62, 544, 676
XspI	CTAG	2 cut(s)	396, 402
ZraI	GACGTC	1 cut(s)	583
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.