Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003162

Physical Location & Seq

Genomic Coordinates Reverse (-)

34583157 .. 34584801

Gene Structure 1645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG284100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAACCCGCCACCGCAGCGGCCCACCACCCCAAAAAAGGAGCTCCAACTCCAAGGCCCCCGCCCAGCCCCTCTCAAAGTCAGCAAAGACTCCGTCAAAATCAAGAAGCCGCCTCCCCACCCCCACCTCCGCCAAAACGCACCTCAACAACAGTTCCTGCCGCCGCCGCAGCAGCACCAGGAGCCGGTGGTCATCTACACCGTCTCGCCCAAAGTGATTCACACCTCCGTCAACGAGTTCATGTCCCTCGTCCAACGCCTCACCGGCCCTTCCTCCTCTCCCCCCGGCGACCTCTCCCCCGCCGCCCGCCTCGCCTCCATTGAGAAAACCAGCCCCTCTTCCGATCAGAAGCACTTCCCGCCCGTAAATACCACCACAGCCACCGCCGCCATTGACGACGACTTTATGGATAGTATTCTGGAGGGTATTGACTTGATGGGTCAGTTCCCGGGGATTCTGTCGCCGGCGCCGGCCACCATGCCGCCGATCCCAGCTGGGTTCTTCTCTCCGGCCGCCGAAGACCCGCAAAACTTCAACTGGCAAGGCGCCAACAACATCAACAGCGGCTTCAATAGTTTCATGCCGAGCCCTTCCTCGAATTCGGCTCTGTTTTCGGCTCCTCTGGTTTCTCCGAGCCCTTCTTCGTGGGACCTCTTCAACAATTTCTTGGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0008150 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Protein Analysis

225

Amino Acids

24.33

Weight (kDa)

6.18

Isoelectric Point (pI)

76.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	67 - 94	1.4e-12	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18690
fragaria_vesca	FvH4_1g24040 FvH4_2g14340
malus_domestica	MD01G1011800.v1.1 MD05G1018300.v1.1 MD10G1018000.v1.1 MD15G1338100.v1.1
prunus_persica	Prupe.2G000100_v2.0.a1 Prupe.8G022500_v2.0.a1
pyrus_communis	pycom05g01090 pycom10g01210 pycom10g02690 pycom15g28840
rosa_chinensis	RchiOBHm_Chr2g0120181 RchiOBHm_Chr6g0276681
rosa_laevigata	RLG00000013379 RLG00000018529
rosa_multiflora	Rmu_co8026628.1_g000001 Rmu_co8303727.1_g000002 Rmu_co8442907.1_g000001 Rmu_sc0000441.1_g000027 Rmu_sc0002162.1_g000036 Rmu_sc0025168.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123640 Rroxscaffold_7G00192120
rosa_rugosa	Rorug02G0227500 Rorug06G0102900
rosa_samantha	Rh2AG284100 Rh2BG295300 Rh2CG272700 Rh2DG309100 Rh6AG213100 Rh6BG218100 Rh6CG220600 Rh6DG210700
rosa_wichuraiana	Rw2G022760 Rw6G018640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	466, 545
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	2 cut(s)	471, 510
AcsI	RAATTY	1 cut(s)	598
AcyI	GRCGYC	2 cut(s)	467, 546
AfiI	CCNNNNNNNGG	2 cut(s)	37, 184
AgsI	TTSAA	3 cut(s)	535, 571, 658
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	2 cut(s)	43, 494
AluI	AGCT	2 cut(s)	43, 494
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	1 cut(s)	481
AlwNI	CAGNNNCTG	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	448
AoxI	GGCC	5 cut(s)	20, 55, 265, 471, 510
ApeKI	GCWGC	3 cut(s)	16, 169, 172
ApoI	RAATTY	1 cut(s)	598
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	469, 548
AspS9I	GGNCC	4 cut(s)	21, 56, 266, 649
AsuC2I	CCSGG	3 cut(s)	285, 449, 450
AsuHPI	GGTGA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	649
BanI	GGYRCC	2 cut(s)	466, 545
BanII	GRGCYC	3 cut(s)	45, 590, 638
BbsI	GAAGAC	1 cut(s)	525
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	28, 181, 184
BccI	CCATC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	179
BcnI	CCSGG	3 cut(s)	285, 449, 450
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	676
BfoI	RGCGCY	2 cut(s)	470, 549
BglI	GCCNNNNNGGC	1 cut(s)	264
Bme1390I	CCNGG	4 cut(s)	179, 285, 449, 450
Bme18I	GGWCC	1 cut(s)	649
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	4 cut(s)	21, 56, 266, 649
BmiI	GGNNCC	6 cut(s)	58, 183, 468, 547, 618, 650
BmrFI	CCNGG	4 cut(s)	179, 285, 449, 450
BpiI	GAAGAC	1 cut(s)	525
BpmI	CTGGAG	1 cut(s)	440
BpuMI	CCSGG	3 cut(s)	285, 449, 450
BsaHI	GRCGYC	2 cut(s)	467, 546
BsaJI	CCNNGG	4 cut(s)	52, 283, 448, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 184
Bse118I	RCCGGY	4 cut(s)	184, 263, 463, 469
Bse1I	ACTGG	1 cut(s)	542
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	4 cut(s)	52, 283, 448, 449
BseLI	CCNNNNNNNGG	2 cut(s)	37, 184
BseNI	ACTGG	1 cut(s)	542
BseRI	GAGGAG	2 cut(s)	265, 609
BseX3I	CGGCCG	1 cut(s)	510
BseXI	GCAGC	3 cut(s)	28, 181, 184
BseYI	CCCAGC	3 cut(s)	64, 490, 494
Bsh1285I	CGRYCG	1 cut(s)	513
BshFI	GGCC	5 cut(s)	22, 57, 267, 473, 512
BshNI	GGYRCC	2 cut(s)	466, 545
BsiEI	CGRYCG	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	7 cut(s)	185, 264, 285, 449, 464, 470, 509
BslFI	GGGAC	2 cut(s)	229, 662
BslI	CCNNNNNNNGG	2 cut(s)	37, 184
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	2 cut(s)	229, 662
BsnI	GGCC	5 cut(s)	22, 57, 267, 473, 512
BsoBI	CYCGRG	1 cut(s)	448
Bsp1286I	GDGCHC	3 cut(s)	45, 590, 638
Bsp143I	GATC	2 cut(s)	343, 486
BspANI	GGCC	5 cut(s)	22, 57, 267, 473, 512
BspLI	GGNNCC	6 cut(s)	58, 183, 468, 547, 618, 650
BspPI	GGATC	1 cut(s)	481
BspT107I	GGYRCC	2 cut(s)	466, 545
BsrFI	RCCGGY	4 cut(s)	184, 263, 463, 469
BsrI	ACTGG	1 cut(s)	542
BssAI	RCCGGY	4 cut(s)	184, 263, 463, 469
BssECI	CCNNGG	4 cut(s)	52, 283, 448, 449
BssMI	GATC	2 cut(s)	343, 486
BssNI	GRCGYC	2 cut(s)	467, 546
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	153, 202
Bst6I	CTCTTC	2 cut(s)	343, 659
BstACI	GRCGYC	2 cut(s)	467, 546
BstC8I	GCNNGC	3 cut(s)	307, 465, 471
BstH2I	RGCGCY	2 cut(s)	470, 549
BstHHI	GCGC	2 cut(s)	469, 548
BstKTI	GATC	2 cut(s)	346, 489
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	2 cut(s)	343, 486
BstMCI	CGRYCG	1 cut(s)	513
BstMWI	GCNNNNNNNGC	9 cut(s)	16, 166, 169, 172, 181, 264, 311, 358, 386
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	4 cut(s)	177, 283, 447, 448
BstV1I	GCAGC	3 cut(s)	28, 181, 184
BstV2I	GAAGAC	1 cut(s)	525
BstZI	CGGCCG	1 cut(s)	510
BsuRI	GGCC	5 cut(s)	22, 57, 267, 473, 512
Cac8I	GCNNGC	3 cut(s)	307, 465, 471
CaiI	CAGNNNCTG	1 cut(s)	157
CfoI	GCGC	2 cut(s)	469, 548
Cfr10I	RCCGGY	4 cut(s)	184, 263, 463, 469
Cfr13I	GGNCC	4 cut(s)	21, 56, 266, 649
Cfr9I	CCCGGG	1 cut(s)	448
CviAII	CATG	3 cut(s)	241, 478, 580
DinI	GGCGCC	2 cut(s)	468, 547
DpnI	GATC	2 cut(s)	345, 488
DpnII	GATC	2 cut(s)	343, 486
EaeI	YGGCCR	2 cut(s)	471, 510
EagI	CGGCCG	1 cut(s)	510
Eam1104I	CTCTTC	2 cut(s)	343, 659
EarI	CTCTTC	2 cut(s)	343, 659
EciI	GGCGGA	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	43
EclXI	CGGCCG	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	52
Eco24I	GRGCYC	3 cut(s)	45, 590, 638
Eco47I	GGWCC	1 cut(s)	649
Eco52I	CGGCCG	1 cut(s)	510
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	43
EcoO109I	RGGNCCY	2 cut(s)	56, 649
EcoRI	GAATTC	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	3 cut(s)	45, 590, 638
EgeI	GGCGCC	2 cut(s)	468, 547
EheI	GGCGCC	2 cut(s)	468, 547
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	3 cut(s)	244, 481, 583
FaiI	YATR	4 cut(s)	242, 407, 479, 581
FaqI	GGGAC	2 cut(s)	229, 662
FatI	CATG	3 cut(s)	240, 477, 579
FauI	CCCGC	6 cut(s)	15, 68, 307, 314, 366, 531
FriOI	GRGCYC	3 cut(s)	45, 590, 638
FspBI	CTAG	1 cut(s)	676
GlaI	GCGC	2 cut(s)	468, 547
GsaI	CCCAGC	3 cut(s)	68, 494, 498
GsuI	CTGGAG	1 cut(s)	440
HaeII	RGCGCY	2 cut(s)	470, 549
HaeIII	GGCC	5 cut(s)	22, 57, 267, 473, 512
HapII	CCGG	7 cut(s)	185, 264, 285, 449, 464, 470, 509
HhaI	GCGC	2 cut(s)	469, 548
Hin1I	GRCGYC	2 cut(s)	467, 546
Hin1II	CATG	3 cut(s)	244, 481, 583
Hin6I	GCGC	2 cut(s)	467, 546
HinP1I	GCGC	2 cut(s)	467, 546
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	3 cut(s)	89, 217, 454
HpaII	CCGG	7 cut(s)	185, 264, 285, 449, 464, 470, 509
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	343, 348, 633
Hpy188III	TCNNGA	2 cut(s)	103, 419
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	3 cut(s)	279, 600, 648
HpyCH4III	ACNGT	2 cut(s)	153, 202
HpyF10VI	GCNNNNNNNGC	9 cut(s)	16, 166, 169, 172, 181, 264, 311, 358, 386
Hsp92I	GRCGYC	2 cut(s)	467, 546
Hsp92II	CATG	3 cut(s)	244, 481, 583
HspAI	GCGC	2 cut(s)	467, 546
KasI	GGCGCC	2 cut(s)	466, 545
KroI	GCCGGC	2 cut(s)	463, 469
KroNI	GCCGGC	2 cut(s)	465, 471
Kzo9I	GATC	2 cut(s)	343, 486
LmnI	GCTCC	4 cut(s)	40, 48, 181, 622
Lsp1109I	GCAGC	3 cut(s)	28, 181, 184
MaeI	CTAG	1 cut(s)	676
MalI	GATC	2 cut(s)	345, 488
MboI	GATC	2 cut(s)	343, 486
MboII	GAAGA	5 cut(s)	330, 493, 530, 633, 646
MhlI	GDGCHC	3 cut(s)	45, 590, 638
MluCI	AATT	2 cut(s)	598, 661
Mly113I	GGCGCC	2 cut(s)	467, 546
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	70, 277
MreI	CGCCGGCG	1 cut(s)	463
MroNI	GCCGGC	2 cut(s)	463, 469
MroXI	GAANNNNTTC	1 cut(s)	353
MspA1I	CMGCKG	3 cut(s)	19, 494, 564
MspI	CCGG	7 cut(s)	185, 264, 285, 449, 464, 470, 509
MspR9I	CCNGG	4 cut(s)	179, 285, 449, 450
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	9 cut(s)	16, 166, 169, 172, 181, 264, 311, 358, 386
NaeI	GCCGGC	2 cut(s)	465, 471
NarI	GGCGCC	2 cut(s)	467, 546
NciI	CCSGG	3 cut(s)	285, 449, 450
NdeII	GATC	2 cut(s)	343, 486
NgoMIV	GCCGGC	2 cut(s)	463, 469
NlaIII	CATG	3 cut(s)	244, 481, 583
NlaIV	GGNNCC	6 cut(s)	58, 183, 468, 547, 618, 650
NmeAIII	GCCGAG	1 cut(s)	609
PdiI	GCCGGC	2 cut(s)	465, 471
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	217, 454
PflFI	GACNNNGTC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	83
PluTI	GGCGCC	2 cut(s)	470, 549
PpsI	GAGTC	1 cut(s)	83
PpuMI	RGGWCCY	1 cut(s)	649
Psp124BI	GAGCTC	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	649
Psp6I	CCWGG	1 cut(s)	177
PspFI	CCCAGC	3 cut(s)	64, 490, 494
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	6 cut(s)	58, 183, 468, 547, 618, 650
PspPI	GGNCC	4 cut(s)	21, 56, 266, 649
PspPPI	RGGWCCY	1 cut(s)	649
PstNI	CAGNNNCTG	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	494
SacI	GAGCTC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	343, 486
Sau96I	GGNCC	4 cut(s)	21, 56, 266, 649
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	4 cut(s)	179, 285, 449, 450
SduI	GDGCHC	3 cut(s)	45, 590, 638
SetI	ASST	7 cut(s)	45, 129, 145, 227, 294, 496, 654
SfoI	GGCGCC	2 cut(s)	468, 547
SgrAI	CRCCGGYG	1 cut(s)	463
SinI	GGWCC	1 cut(s)	649
SmaI	CCCGGG	1 cut(s)	450
Sse9I	AATT	2 cut(s)	598, 661
SspDI	GGCGCC	2 cut(s)	466, 545
SspMI	CTAG	1 cut(s)	676
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	4 cut(s)	177, 283, 447, 448
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	153, 202
TaqI	TCGA	1 cut(s)	596
TasI	AATT	2 cut(s)	598, 661
TfiI	GAWTC	2 cut(s)	217, 454
TseI	GCWGC	3 cut(s)	16, 169, 172
TspDTI	ATGAA	3 cut(s)	17, 229, 568
TspGWI	ACGGA	2 cut(s)	82, 217
TspMI	CCCGGG	1 cut(s)	448
Tth111I	GACNNNGTC	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	649
XapI	RAATTY	1 cut(s)	598
XmaI	CCCGGG	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.