Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001211

Physical Location & Seq

Genomic Coordinates Reverse (-)

7998625 .. 7999552

Gene Structure 928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATCATGGAATCACCAAGAATCTTCCTCCGGCCGTTCAATCTCTCCGATGCAGAAGACGTCTTTAAATGGGCCGGTGACGATGACGTCACACGTTACCTCCGTTGGGACTCCGTTAACTCCTTAGAAGAAGCTAAACAACACATCTTAAACAAGGCTATACCACACCCATGGCGCCGTTCCATCTCTCTCCTCCAAGACGGTCATTCGATTGGTTACGTATCCGTCAAGCCAGACTCCGGTGATGGTCGGTGCCGAGCCGACCTCGCATACGCTGTCGCTAAAGAGTTTTGGGGGCGGGGGATAGCCACAGCGGCGGTGAGGATGGCGGTTGAACAAGCTTTGGAGGATTTTCCGGAGGTGGTGAGGCTACAAGCGGTGGTGGAGGTGGAGAACAAAGCGTCCCAAAGGGTTTTGGAGAAAGCTGGATTTCGAAAAGAGGGTTTACTTGAGAAGTATGGTTTTAGCAAAGGAGTCATCAGAGACATGTTTCTCTATAGTTACGTTAAAGATGATTGTTTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

175

Amino Acids

19.96

Weight (kDa)

5.96

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	7 - 145	2.7e-28	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	51 - 144	1.5e-13	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	65 - 145	5.8e-06	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22560
fragaria_vesca	FvH4_4g26610 FvH4_6g03890
malus_domestica	MD04G1217600.v1.1 MD13G1195500.v1.1 MD16G1196300.v1.1
prunus_persica	Prupe.1G016400_v2.0.a1 Prupe.1G016500_v2.0.a1 Prupe.6G337400_v2.0.a1
pyrus_communis	pycom04g19350 pycom13g16770 pycom13g16780
rosa_chinensis	RchiOBHm_Chr3g0452461 RchiOBHm_Chr4g0415671 RchiOBHm_Chr4g0415681 RchiOBHm_Chr4g0415701 RchiOBHm_Chr4g0415711 RchiOBHm_Chr6g0273471
rosa_laevigata	RLG00000008048 RLG00000008049 RLG00000013614 RLG00000025600
rosa_multiflora	Rmu_sc0004536.1_g000003 Rmu_sc0004536.1_g000004 Rmu_sc0011680.1_g000006 Rmu_sc0026940.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355380 Rroxscaffold_6G00429470 Rroxscaffold_7G00195300
rosa_rugosa	Rorug02G0641100 Rorug04G0113600 Rorug04G0113700 Rorug04G0136300 Rorug04G0136400 Rorug06G0075600
rosa_samantha	Rh3AG042800 Rh3BG044500 Rh3CG043100 Rh3DG043900 Rh4AG197200 Rh4AG197300 Rh4BG195700 Rh4BG195800 Rh4CG208000 Rh4CG208100 Rh4CG208300 Rh4DG195000 Rh4DG195100 Rh6AG190300 Rh6BG193800 Rh6CG193300 Rh6DG184900
rosa_wichuraiana	Rw3G003310 Rw4G016770 Rw4G016780 Rw6G016650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AatII	GACGTC	2 cut(s)	63, 90
AccB1I	GGYRCC	2 cut(s)	174, 252
AccIII	TCCGGA	1 cut(s)	355
AciI	CCGC	5 cut(s)	298, 314, 317, 329, 377
AcoI	YGGCCR	1 cut(s)	32
AcyI	GRCGYC	3 cut(s)	60, 87, 175
AfiI	CCNNNNNNNGG	2 cut(s)	106, 239
AflIII	ACRYGT	2 cut(s)	92, 486
AgsI	TTSAA	2 cut(s)	40, 335
AloI	GAACNNNNNNTCC	2 cut(s)	386, 418
AluBI	AGCT	3 cut(s)	134, 341, 425
AluI	AGCT	3 cut(s)	134, 341, 425
Alw26I	GTCTC	1 cut(s)	477
Aor13HI	TCCGGA	1 cut(s)	355
AoxI	GGCC	2 cut(s)	32, 72
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	5 cut(s)	6, 89, 254, 331, 376
AsuII	TTCGAA	1 cut(s)	433
BanI	GGYRCC	2 cut(s)	174, 252
BbsI	GAAGAC	1 cut(s)	63
BccI	CCATC	3 cut(s)	191, 239, 319
BceAI	ACGGC	2 cut(s)	19, 162
BciVI	GTATCC	1 cut(s)	232
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	496
BfoI	RGCGCY	1 cut(s)	178
BfuI	GTATCC	1 cut(s)	232
BglI	GCCNNNNNGGC	1 cut(s)	314
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	176, 254
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	249, 281
Bpu14I	TTCGAA	1 cut(s)	433
BpuEI	CTTGAG	1 cut(s)	470
BsaAI	YACGTR	1 cut(s)	220
BsaHI	GRCGYC	3 cut(s)	60, 87, 175
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	2 cut(s)	239, 355
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 239
Bse118I	RCCGGY	1 cut(s)	74
BseAI	TCCGGA	1 cut(s)	355
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	106, 239
BseRI	GAGGAG	1 cut(s)	182
BseX3I	CGGCCG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	34, 74
BshNI	GGYRCC	2 cut(s)	174, 252
BsiEI	CGRYCG	1 cut(s)	35
BsiSI	CCGG	4 cut(s)	31, 75, 240, 356
BslFI	GGGAC	2 cut(s)	122, 388
BslI	CCNNNNNNNGG	2 cut(s)	106, 239
BsmAI	GTCTC	1 cut(s)	477
BsmFI	GGGAC	2 cut(s)	122, 388
BsnI	GGCC	2 cut(s)	34, 74
Bsp119I	TTCGAA	1 cut(s)	433
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	5 cut(s)	298, 314, 317, 329, 377
BspANI	GGCC	2 cut(s)	34, 74
BspEI	TCCGGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	176, 254
BspT104I	TTCGAA	1 cut(s)	433
BspT107I	GGYRCC	2 cut(s)	174, 252
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	3 cut(s)	60, 87, 175
BssT1I	CCWWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	203
BstACI	GRCGYC	3 cut(s)	60, 87, 175
BstBAI	YACGTR	1 cut(s)	220
BstBI	TTCGAA	1 cut(s)	433
BstDEI	CTNAG	1 cut(s)	124
BstDSI	CCRYGG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	477
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 314
BstNSI	RCATGY	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	496
BstSNI	TACGTA	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	63
BstXI	CCANNNNNNTGG	1 cut(s)	171
BstZI	CGGCCG	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	34, 74
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	330
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	72
CseI	GACGC	1 cut(s)	390
CviAII	CATG	3 cut(s)	7, 171, 487
DdeI	CTNAG	1 cut(s)	124
DinI	GGCGCC	1 cut(s)	176
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DraI	TTTAAA	1 cut(s)	67
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	32
EagI	CGGCCG	1 cut(s)	32
EclXI	CGGCCG	1 cut(s)	32
Eco105I	TACGTA	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	170
Eco52I	CGGCCG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	170
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	3 cut(s)	10, 174, 490
FaiI	YATR	7 cut(s)	8, 161, 172, 271, 459, 488, 498
FaqI	GGGAC	2 cut(s)	122, 388
FatI	CATG	3 cut(s)	6, 170, 486
FauI	CCCGC	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	315
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	1 cut(s)	315
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	34, 74
HapII	CCGG	4 cut(s)	31, 75, 240, 356
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	3 cut(s)	60, 87, 175
Hin1II	CATG	3 cut(s)	10, 174, 490
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	5 cut(s)	11, 21, 110, 236, 474
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	4 cut(s)	31, 75, 240, 356
HphI	GGTGA	5 cut(s)	6, 89, 254, 331, 376
Hpy166II	GTNNAC	2 cut(s)	118, 446
Hpy188I	TCNGA	2 cut(s)	49, 482
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	2 cut(s)	118, 446
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	5 cut(s)	60, 87, 94, 219, 504
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 314
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	5 cut(s)	60, 87, 94, 219, 504
Hsp92I	GRCGYC	3 cut(s)	60, 87, 175
Hsp92II	CATG	3 cut(s)	10, 174, 490
HspAI	GCGC	1 cut(s)	175
KasI	GGCGCC	1 cut(s)	174
Kpn2I	TCCGGA	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	6 cut(s)	44, 88, 246, 253, 369, 411
LweI	GCATC	1 cut(s)	40
MaeII	ACGT	5 cut(s)	60, 87, 94, 219, 504
MaeIII	GTNAC	5 cut(s)	77, 88, 95, 215, 500
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	16, 68, 140
Mly113I	GGCGCC	1 cut(s)	175
MlyI	GAGTC	3 cut(s)	104, 230, 483
MroI	TCCGGA	1 cut(s)	355
MseI	TTAA	4 cut(s)	66, 117, 149, 507
MslI	CAYNNNNRTG	1 cut(s)	169
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	4 cut(s)	31, 75, 240, 356
MwoI	GCNNNNNNNGC	2 cut(s)	266, 314
NarI	GGCGCC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	3 cut(s)	10, 174, 490
NlaIV	GGNNCC	2 cut(s)	176, 254
NmeAIII	GCCGAG	1 cut(s)	281
NmuCI	GTSAC	2 cut(s)	77, 88
NspI	RCATGY	1 cut(s)	490
NspV	TTCGAA	1 cut(s)	433
PciI	ACATGT	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	11, 21
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	3 cut(s)	104, 230, 482
PluTI	GGCGCC	1 cut(s)	178
PpsI	GAGTC	3 cut(s)	104, 230, 482
Ppu21I	YACGTR	1 cut(s)	220
PscI	ACATGT	1 cut(s)	486
PspN4I	GGNNCC	2 cut(s)	176, 254
PspPI	GGNCC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	169
SaqAI	TTAA	4 cut(s)	66, 117, 149, 507
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	3 cut(s)	104, 230, 483
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	496
SfoI	GGCGCC	1 cut(s)	176
SfuI	TTCGAA	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SnaBI	TACGTA	1 cut(s)	220
SsiI	CCGC	5 cut(s)	298, 314, 317, 329, 377
SspDI	GGCGCC	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	5 cut(s)	63, 90, 97, 222, 507
TaqI	TCGA	2 cut(s)	209, 433
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	11, 21
Tru1I	TTAA	4 cut(s)	66, 117, 149, 507
Tru9I	TTAA	4 cut(s)	66, 117, 149, 507
TseFI	GTSAC	2 cut(s)	77, 88
Tsp45I	GTSAC	2 cut(s)	77, 88
TspGWI	ACGGA	3 cut(s)	92, 103, 214
XceI	RCATGY	1 cut(s)	490
ZraI	GACGTC	2 cut(s)	61, 88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.