Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001211

Physical Location & Seq

Genomic Coordinates Forward (+)

22105945 .. 22106672

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0136400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCTGGAGCCCGACGTTTTTGGATCAATGTTTGCTGAACTACTAGGTTTCGATGAATATATTCCCACTTTTGCGGCTGCAATTGGAGGAGATATAACAAAAGGTGTAAATTATGCATCTGGTGCAGCTGGTATCCGTGACGAATCTGGACGTAACCAGGGAATGAGAATAACCTTGTATAAGCAATTGATAAATCACCAAATCATAGTCAATAAGCTTGTTGCCAATGATTCACTCGCTGCAGATTATCTAAGCAAGTGCATATATTCGATTGGGATAGGCACTAACGATTACATTAACAACTACTTCATGCCAAAACTCTACCCAACTAGCCGCTTATATACTCCAAAGCAATATGCAGATATTCTTGTCCAAGAATACTCTCAGCAATTACGGACTCTGTACAACTCGGGGGCAAGAAAGATGGCCCTTATTGGACTCGGTACGATAGGTTCCACACCCTTCGAAGTGGCAATGTGTGGCACAAACGGCACCGTATGTGTTGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

170

Amino Acids

18.6

Weight (kDa)

5.32

Isoelectric Point (pI)

23.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	5 - 154	5.2e-13	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22560
fragaria_vesca	FvH4_4g26610 FvH4_6g03890
malus_domestica	MD04G1217600.v1.1 MD13G1195500.v1.1 MD16G1196300.v1.1
prunus_persica	Prupe.1G016400_v2.0.a1 Prupe.1G016500_v2.0.a1 Prupe.6G337400_v2.0.a1
pyrus_communis	pycom04g19350 pycom13g16770 pycom13g16780
rosa_chinensis	RchiOBHm_Chr3g0452461 RchiOBHm_Chr4g0415671 RchiOBHm_Chr4g0415681 RchiOBHm_Chr4g0415701 RchiOBHm_Chr4g0415711 RchiOBHm_Chr6g0273471
rosa_laevigata	RLG00000008048 RLG00000008049 RLG00000013614 RLG00000025600
rosa_multiflora	Rmu_sc0004536.1_g000003 Rmu_sc0004536.1_g000004 Rmu_sc0011680.1_g000006 Rmu_sc0026940.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355380 Rroxscaffold_6G00429470 Rroxscaffold_7G00195300
rosa_rugosa	Rorug02G0641100 Rorug04G0113600 Rorug04G0113700 Rorug04G0136300 Rorug04G0136400 Rorug06G0075600
rosa_samantha	Rh3AG042800 Rh3BG044500 Rh3CG043100 Rh3DG043900 Rh4AG197200 Rh4AG197300 Rh4BG195700 Rh4BG195800 Rh4CG208000 Rh4CG208100 Rh4CG208300 Rh4DG195000 Rh4DG195100 Rh6AG190300 Rh6BG193800 Rh6CG193300 Rh6DG184900
rosa_wichuraiana	Rw3G003310 Rw4G016770 Rw4G016780 Rw6G016650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	491
AciI	CCGC	2 cut(s)	74, 334
AclWI	GGATC	1 cut(s)	31
AfaI	GTAC	2 cut(s)	404, 445
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	128, 217
AluI	AGCT	2 cut(s)	128, 217
AlwI	GGATC	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	409
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	3 cut(s)	77, 125, 239
Asp700I	GAANNNNTTC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	188
AsuII	TTCGAA	1 cut(s)	465
AvaI	CYCGRG	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	12
BbvI	GCAGC	3 cut(s)	64, 137, 226
BccI	CCATC	1 cut(s)	418
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	1 cut(s)	158
BciVI	GTATCC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	44, 330
BfmI	CTRYAG	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	143
BisI	GCNGC	5 cut(s)	75, 78, 126, 240, 334
BlsI	GCNGC	5 cut(s)	76, 79, 127, 241, 335
Bme1390I	CCNGG	1 cut(s)	158
BmeT110I	CYCGRG	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	3 cut(s)	9, 454, 493
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	26
Bpu14I	TTCGAA	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	64, 137, 226
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	428
BshNI	GGYRCC	1 cut(s)	491
BsiHKCI	CYCGRG	1 cut(s)	409
BsnI	GGCC	1 cut(s)	428
BsoBI	CYCGRG	1 cut(s)	409
Bsp119I	TTCGAA	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp1407I	TGTACA	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	2 cut(s)	74, 334
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	3 cut(s)	9, 454, 493
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	31
BspT104I	TTCGAA	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	480
BsrGI	TGTACA	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	402
BstBI	TTCGAA	1 cut(s)	465
BstDEI	CTNAG	2 cut(s)	251, 384
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 489
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	64, 137, 226
BsuI	GTATCC	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	403, 444
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	6 cut(s)	10, 77, 128, 217, 333, 428
CviKI_1	RGCY	6 cut(s)	10, 77, 128, 217, 333, 428
CviQI	GTAC	2 cut(s)	403, 444
DdeI	CTNAG	2 cut(s)	251, 384
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	1 cut(s)	313
FatI	CATG	1 cut(s)	309
Fnu4HI	GCNGC	5 cut(s)	75, 78, 126, 240, 334
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	5 cut(s)	75, 78, 126, 240, 334
FspBI	CTAG	2 cut(s)	44, 330
GluI	GCNGC	5 cut(s)	75, 78, 126, 240, 334
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	428
Hin1II	CATG	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	4 cut(s)	143, 230, 397, 438
HphI	GGTGA	1 cut(s)	188
Hpy188III	TCNNGA	1 cut(s)	147
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	2 cut(s)	15, 151
HpyCH4V	TGCA	6 cut(s)	80, 116, 125, 242, 261, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 489
HpyF3I	CTNAG	2 cut(s)	251, 384
HpySE526I	ACGT	2 cut(s)	15, 151
Hsp92II	CATG	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	5 cut(s)	105, 114, 132, 143, 170
Lsp1109I	GCAGC	3 cut(s)	64, 137, 226
LweI	GCATC	1 cut(s)	125
MaeI	CTAG	2 cut(s)	44, 330
MaeII	ACGT	2 cut(s)	15, 151
MaeIII	GTNAC	2 cut(s)	137, 152
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MfeI	CAATTG	2 cut(s)	81, 185
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	4 cut(s)	81, 109, 185, 389
MlyI	GAGTC	2 cut(s)	391, 432
MnlI	CCTC	1 cut(s)	80
Mph1103I	ATGCAT	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	60
MseI	TTAA	2 cut(s)	297, 511
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	158
MunI	CAATTG	2 cut(s)	81, 185
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	122, 489
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	3 cut(s)	9, 454, 493
NmuCI	GTSAC	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	143, 230
PkrI	GCNGC	5 cut(s)	76, 79, 127, 241, 335
PleI	GAGTC	2 cut(s)	391, 432
PpsI	GAGTC	2 cut(s)	391, 432
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	3 cut(s)	9, 454, 493
PspPI	GGNCC	1 cut(s)	427
PsrI	GAACNNNNNNTAC	2 cut(s)	436, 468
PstI	CTGCAG	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	2 cut(s)	404, 445
RsaNI	GTAC	2 cut(s)	403, 444
SaqAI	TTAA	2 cut(s)	297, 511
SatI	GCNGC	5 cut(s)	75, 78, 126, 240, 334
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	2 cut(s)	391, 432
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	8 cut(s)	18, 49, 106, 130, 154, 176, 219, 454
SfaNI	GCATC	1 cut(s)	125
SfcI	CTRYAG	1 cut(s)	240
SfuI	TTCGAA	1 cut(s)	465
Sse9I	AATT	4 cut(s)	81, 109, 185, 389
SsiI	CCGC	2 cut(s)	74, 334
SspMI	CTAG	2 cut(s)	44, 330
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	2 cut(s)	18, 154
TaqI	TCGA	3 cut(s)	51, 269, 465
TasI	AATT	4 cut(s)	81, 109, 185, 389
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	2 cut(s)	77, 336
TfiI	GAWTC	2 cut(s)	143, 230
Tru1I	TTAA	2 cut(s)	297, 511
Tru9I	TTAA	2 cut(s)	297, 511
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	3 cut(s)	77, 125, 239
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	69, 298
TspGWI	ACGGA	2 cut(s)	125, 409
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	2 cut(s)	44, 330
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.