Rorug04G0136300

Acetyltransferase (GNAT) domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
22103306 .. 22104972
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0136300.1

Sequence Viewer

Length: 435 bp
ATGCGTGTAGAATTCGATGTTTGTTCTGTGAAGGTTCAATTTTGCTTTGTAATTTGTGTATCAGTGCGCTCAGATTTATTAGAGATTCACATCAAAAACAAATTCACAGAAGGGATTAAGGAAATTGCAAGATTGCTAATTGAGAAGAATCCTGATGATCCTTCAACATATATTATGTTATCACATAGTCTTGCTTCTGGAAACAAATGGAATGAGGTGCGGAAGGTGAGACTAAAGATGAAAGAATTGGGATTAAGGAAAAATCCTGGGTGTAGCTGGATTGAGATTAACGAGAGGATTCAGCCTTTCTTTGTTCAAGACGAGTCCCACCCAGAATCCGAAATGGTATATCAGTGTCTCAAACTTCTCAAGAGTCACATGGAGGGAGATGAGTTATTTCCACACTGGGGATCAGCAATATTTCATACTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.81

Weight (kDa)

6.59

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 43 - 95 1.9e-14 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 220
AclWI GGATC 2 cut(s) 152, 418
AcsI RAATTY 2 cut(s) 11, 101
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 3 cut(s) 38, 165, 317
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 1 cut(s) 276
AluI AGCT 1 cut(s) 276
Alw26I GTCTC 2 cut(s) 223, 362
AlwI GGATC 2 cut(s) 152, 418
ApoI RAATTY 2 cut(s) 11, 101
AspLEI GCGC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 238
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 223, 362
Bme1390I CCNGG 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 267
BmrI ACTGGG 1 cut(s) 415
BmuI ACTGGG 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 353
BsaBI GATNNNNATC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 410
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 266
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 410
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 223, 362
BsmFI GGGAC 1 cut(s) 310
Bsp143I GATC 2 cut(s) 157, 410
BspACI CCGC 1 cut(s) 220
BspCNI CTCAG 1 cut(s) 83
BspPI GGATC 2 cut(s) 152, 418
BsrI ACTGG 1 cut(s) 410
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 2 cut(s) 157, 410
Bst2UI CCWGG 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 2 cut(s) 160, 413
BstMAI GTCTC 2 cut(s) 223, 362
BstMBI GATC 2 cut(s) 157, 410
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BtsIMutI CAGTG 3 cut(s) 69, 359, 403
CfoI GCGC 1 cut(s) 69
CviAII CATG 1 cut(s) 379
CviJI RGCY 2 cut(s) 276, 304
CviKI_1 RGCY 2 cut(s) 276, 304
DdeI CTNAG 1 cut(s) 70
DpnI GATC 2 cut(s) 159, 412
DpnII GATC 2 cut(s) 157, 410
EcoRI GAATTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 265
FaeI CATG 1 cut(s) 382
FaiI YATR 9 cut(s) 169, 171, 176, 186, 349, 380, 426, 431, 433
FaqI GGGAC 1 cut(s) 310
FatI CATG 1 cut(s) 378
GlaI GCGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 382
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 6 cut(s) 85, 148, 298, 323, 335, 373
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 73, 340
Hpy188III TCNNGA 4 cut(s) 152, 198, 317, 370
HpyAV CCTTC 4 cut(s) 25, 104, 171, 217
HpyCH4V TGCA 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 70
Hsp92II CATG 1 cut(s) 382
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 157, 410
LpnPI CCDG 7 cut(s) 165, 183, 252, 262, 279, 345, 391
MaeIII GTNAC 1 cut(s) 374
MalI GATC 2 cut(s) 159, 412
MboI GATC 2 cut(s) 157, 410
MboII GAAGA 1 cut(s) 157
MluCI AATT 7 cut(s) 11, 38, 51, 101, 123, 138, 245
MlyI GAGTC 2 cut(s) 332, 382
MnlI CCTC 3 cut(s) 208, 288, 376
MseI TTAA 3 cut(s) 117, 254, 288
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
NdeII GATC 2 cut(s) 157, 410
NlaIII CATG 1 cut(s) 382
NmuCI GTSAC 1 cut(s) 374
PfeI GAWTC 4 cut(s) 85, 148, 298, 335
PleI GAGTC 2 cut(s) 331, 381
PpsI GAGTC 2 cut(s) 331, 381
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
SaqAI TTAA 3 cut(s) 117, 254, 288
Sau3AI GATC 2 cut(s) 157, 410
SchI GAGTC 2 cut(s) 332, 382
ScrFI CCNGG 1 cut(s) 267
SetI ASST 4 cut(s) 36, 219, 228, 278
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 7 cut(s) 11, 38, 51, 101, 123, 138, 245
SsiI CCGC 1 cut(s) 220
SspI AATATT 1 cut(s) 420
StyD4I CCNGG 1 cut(s) 265
TaqI TCGA 1 cut(s) 15
TasI AATT 7 cut(s) 11, 38, 51, 101, 123, 138, 245
TfiI GAWTC 4 cut(s) 85, 148, 298, 335
Tru1I TTAA 3 cut(s) 117, 254, 288
Tru9I TTAA 3 cut(s) 117, 254, 288
TscAI CASTG 3 cut(s) 69, 359, 410
TseFI GTSAC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 2 cut(s) 254, 413
TspRI CASTG 3 cut(s) 69, 359, 410
XapI RAATTY 2 cut(s) 11, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.