RchiOBHm_Chr4g0415711

N-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001211
Physical Location & Seq
Forward (+)
40432166 .. 40437013
4848 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38593

Sequence Viewer

Length: 687 bp
ATGGATTCATCCAGAATTTCACTTCGTCCTTTCAAACTCTCCGATGCTGATGACTTCCTGAAATGGGCAAGTGATGACAGAGTAACACGCTATCTGAGATGGAACACCATAACTTCTGGAGAAGAAGCCTTGACATATATTGAGAAGGTTTGTATTCCTCACCCAAGGCGTCAGTCCATATGTTTGGATGACCATTGCATAGGATATGTTTCTGTCAAGCCCGAACGGGGCTATGATTCGTGCAGGGCACATGGACTAAAGTTGAGTTGTTCTTTAAAGGAACCGCCTTTGAAGGTTATGATTTCCGGTGCACCGACTTCTGGGAAAGGAACTCAGTGTGAATTGATTGTCAAGAAGTTTGGATTGGTGCACATATCAACAACGGACCTTCTAAGAGCTGAAGTGTCATCTGGGACTGAAATTGGAAACAAAGCCAAAGGGTTCATGCATAATGGCAAGTTGGTTCCTGATGAAATCGTCACAGCTCGGGCAATTGGTGTTGAGTCTGAAATTGGGATTGTCACATTGGCATTGAAGATGGCCATCTCTAGGGTCTTCAAAGAGTTCCTATTTCTGGTGAGGATTGAGGCTTTGGTTGAGGTTGAGAATAAGGGATCTCAAAGGGTTTTAGAGAAGGTTGGGTTTGTGAAAGAAGGGTTGAAGGAAGTATGGGCATTGCAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

228

Amino Acids

25.41

Weight (kDa)

8.85

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 5 - 95 2e-07 Acetyltransferase (GNAT) domain
ADK PF00406 101 - 162 4e-22 Adenylate kinase
AAA_17 PF13207 103 - 165 1e-12 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 284
AclWI GGATC 1 cut(s) 622
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 420
AcyI GRCGYC 1 cut(s) 169
AfiI CCNNNNNNNGG 5 cut(s) 64, 227, 320, 549, 574
AgsI TTSAA 5 cut(s) 34, 292, 535, 559, 661
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 2 cut(s) 398, 485
AluI AGCT 2 cut(s) 398, 485
Alw21I GWGCWC 2 cut(s) 313, 372
Alw44I GTGCAC 2 cut(s) 309, 368
AlwI GGATC 1 cut(s) 622
Ama87I CYCGRG 1 cut(s) 486
AoxI GGCC 1 cut(s) 540
ApaLI GTGCAC 2 cut(s) 309, 368
ApoI RAATTY 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 2 cut(s) 152, 589
AvaI CYCGRG 1 cut(s) 486
AvaII GGWCC 1 cut(s) 385
BaeGI GKGCMC 3 cut(s) 250, 313, 372
BalI TGGCCA 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 547
Bbv12I GWGCWC 2 cut(s) 313, 372
BccI CCATC 3 cut(s) 93, 532, 551
BfaI CTAG 1 cut(s) 549
Bme18I GGWCC 1 cut(s) 385
BmeT110I CYCGRG 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 2 cut(s) 282, 465
BmsI GCATC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 547
BpmI CTGGAG 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 305
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 227, 320, 549, 574
Bse3DI GCAATG 2 cut(s) 193, 674
Bse8I GATNNNNATC 1 cut(s) 542
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 8, 193
BseJI GATNNNNATC 1 cut(s) 542
BseLI CCNNNNNNNGG 5 cut(s) 64, 227, 320, 549, 574
BseMI GCAATG 2 cut(s) 193, 674
BseMII CTCAG 2 cut(s) 86, 347
BseSI GKGCMC 3 cut(s) 250, 313, 372
BsgI GTGCAG 1 cut(s) 262
BshFI GGCC 1 cut(s) 542
BsiHKAI GWGCWC 2 cut(s) 313, 372
BsiHKCI CYCGRG 1 cut(s) 486
BsiSI CCGG 1 cut(s) 306
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 5 cut(s) 64, 227, 320, 549, 574
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 486
Bsp1286I GDGCHC 3 cut(s) 250, 313, 372
Bsp143I GATC 1 cut(s) 614
BspACI CCGC 1 cut(s) 284
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 2 cut(s) 87, 346
BspLI GGNNCC 2 cut(s) 282, 465
BspPI GGATC 1 cut(s) 622
BsrDI GCAATG 2 cut(s) 193, 674
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 1 cut(s) 614
BssNI GRCGYC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 169
BstDEI CTNAG 3 cut(s) 95, 333, 392
BstF5I GGATG 2 cut(s) 8, 193
BstKTI GATC 1 cut(s) 617
BstMBI GATC 1 cut(s) 614
BstSLI GKGCMC 3 cut(s) 250, 313, 372
BstV2I GAAGAC 1 cut(s) 547
BstX2I RGATCY 1 cut(s) 614
BstXI CCANNNNNNTGG 1 cut(s) 184
BstYI RGATCY 1 cut(s) 614
BsuRI GGCC 1 cut(s) 542
BtsCI GGATG 2 cut(s) 8, 193
BtsIMutI CAGTG 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 385
CseI GACGC 1 cut(s) 158
CviAII CATG 2 cut(s) 251, 445
CviJI RGCY 8 cut(s) 128, 220, 231, 398, 434, 485, 542, 590
CviKI_1 RGCY 8 cut(s) 128, 220, 231, 398, 434, 485, 542, 590
DdeI CTNAG 3 cut(s) 95, 333, 392
DpnI GATC 1 cut(s) 616
DpnII GATC 1 cut(s) 614
DraI TTTAAA 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 2 cut(s) 254, 448
FaqI GGGAC 1 cut(s) 427
FatI CATG 2 cut(s) 250, 444
FauNDI CATATG 1 cut(s) 179
FokI GGATG 1 cut(s) 200
FspBI CTAG 1 cut(s) 549
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 1 cut(s) 542
HapII CCGG 1 cut(s) 306
HgaI GACGC 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 169
Hin1II CATG 2 cut(s) 254, 448
HinfI GANTC 3 cut(s) 5, 236, 503
HpaII CCGG 1 cut(s) 306
HphI GGTGA 2 cut(s) 152, 589
Hpy166II GTNNAC 2 cut(s) 311, 370
Hpy188I TCNGA 3 cut(s) 43, 96, 508
Hpy188III TCNNGA 5 cut(s) 12, 58, 117, 352, 467
Hpy8I GTNNAC 2 cut(s) 311, 370
HpyAV CCTTC 6 cut(s) 139, 286, 398, 628, 647, 655
HpyCH4V TGCA 6 cut(s) 198, 243, 311, 370, 448, 679
HpyF3I CTNAG 3 cut(s) 95, 333, 392
Hsp92I GRCGYC 1 cut(s) 169
Hsp92II CATG 2 cut(s) 254, 448
Kzo9I GATC 1 cut(s) 614
LpnPI CCDG 9 cut(s) 25, 71, 102, 229, 306, 319, 396, 480, 560
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 549
MaeIII GTNAC 3 cut(s) 82, 478, 520
MalI GATC 1 cut(s) 616
MboI GATC 1 cut(s) 614
MboII GAAGA 3 cut(s) 134, 547, 547
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 1 cut(s) 614
MhlI GDGCHC 3 cut(s) 250, 313, 372
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 5 cut(s) 15, 341, 420, 492, 510
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 1 cut(s) 512
MnlI CCTC 4 cut(s) 168, 573, 580, 592
Mox20I TGGCCA 1 cut(s) 542
Mph1103I ATGCAT 1 cut(s) 450
MscI TGGCCA 1 cut(s) 542
MseI TTAA 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 542
MspI CCGG 1 cut(s) 306
MunI CAATTG 1 cut(s) 492
NdeI CATATG 1 cut(s) 179
NdeII GATC 1 cut(s) 614
NlaIII CATG 2 cut(s) 254, 448
NlaIV GGNNCC 2 cut(s) 282, 465
NmuCI GTSAC 2 cut(s) 478, 520
NsiI ATGCAT 1 cut(s) 450
PfeI GAWTC 2 cut(s) 5, 236
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
PspN4I GGNNCC 2 cut(s) 282, 465
PspPI GGNCC 1 cut(s) 385
PsuI RGATCY 1 cut(s) 614
SaqAI TTAA 1 cut(s) 275
Sau3AI GATC 1 cut(s) 614
Sau96I GGNCC 1 cut(s) 385
SchI GAGTC 1 cut(s) 512
SduI GDGCHC 3 cut(s) 250, 313, 372
SetI ASST 8 cut(s) 150, 297, 390, 400, 487, 603, 639, 686
SfaNI GCATC 1 cut(s) 34
SinI GGWCC 1 cut(s) 385
Sse9I AATT 5 cut(s) 15, 341, 420, 492, 510
SsiI CCGC 1 cut(s) 284
SspMI CTAG 1 cut(s) 549
StyI CCWWGG 1 cut(s) 164
TasI AATT 5 cut(s) 15, 341, 420, 492, 510
TfiI GAWTC 2 cut(s) 5, 236
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 341
TseFI GTSAC 2 cut(s) 478, 520
Tsp45I GTSAC 2 cut(s) 478, 520
TspDTI ATGAA 2 cut(s) 433, 486
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 1 cut(s) 341
VneI GTGCAC 2 cut(s) 309, 368
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 15
XspI CTAG 1 cut(s) 549
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.