Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001211

Physical Location & Seq

Genomic Coordinates Reverse (-)

49742536 .. 49742904

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAGATCAACTTGTCAAGCATCACCCTCCGTCCATTCCGGCTATCCGACGTCGAAGATCTCCTGACAGAAGCCGGAGAAGAGCAAGTGACTCGAAACCTCCGATGGAAGACTTTGACAACCAAAGAGGAGGCTTTCACTTTCCTCAAAGATGTGTGTATCCCACACCCTTGGCGCCGGTCGATATGCATCGATGATCGTTCAATCGGCTTTATATCCGTCTTTCCATGGTCAGGTGATGAGAGTCACAAGGCTGACATTGGGTATGGTATAGCCTCAAAGTATTGGGGACAAGGAATAGCCACTGAAGTAGTTAAGACCGCCGTTCCTCTAGTGTTCAGGGACTTGCCTCATTTGCTTAGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

122

Amino Acids

13.96

Weight (kDa)

5.9

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	8 - 116	1.2e-15	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	56 - 110	5.8e-06	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22560
fragaria_vesca	FvH4_4g26610 FvH4_6g03890
malus_domestica	MD04G1217600.v1.1 MD13G1195500.v1.1 MD16G1196300.v1.1
prunus_persica	Prupe.1G016400_v2.0.a1 Prupe.1G016500_v2.0.a1 Prupe.6G337400_v2.0.a1
pyrus_communis	pycom04g19350 pycom13g16770 pycom13g16780
rosa_chinensis	RchiOBHm_Chr3g0452461 RchiOBHm_Chr4g0415671 RchiOBHm_Chr4g0415681 RchiOBHm_Chr4g0415701 RchiOBHm_Chr4g0415711 RchiOBHm_Chr6g0273471
rosa_laevigata	RLG00000008048 RLG00000008049 RLG00000013614 RLG00000025600
rosa_multiflora	Rmu_sc0004536.1_g000003 Rmu_sc0004536.1_g000004 Rmu_sc0011680.1_g000006 Rmu_sc0026940.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355380 Rroxscaffold_6G00429470 Rroxscaffold_7G00195300
rosa_rugosa	Rorug02G0641100 Rorug04G0113600 Rorug04G0113700 Rorug04G0136300 Rorug04G0136400 Rorug06G0075600
rosa_samantha	Rh3AG042800 Rh3BG044500 Rh3CG043100 Rh3DG043900 Rh4AG197200 Rh4AG197300 Rh4BG195700 Rh4BG195800 Rh4CG208000 Rh4CG208100 Rh4CG208300 Rh4DG195000 Rh4DG195100 Rh6AG190300 Rh6BG193800 Rh6CG193300 Rh6DG184900
rosa_wichuraiana	Rw3G003310 Rw4G016770 Rw4G016780 Rw6G016650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	174
AciI	CCGC	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	2 cut(s)	51, 175
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	16, 248
BanI	GGYRCC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	116
BccI	CCATC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	308
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciVI	GTATCC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	178
BfuI	GTATCC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	176
BmsI	GCATC	2 cut(s)	30, 198
BpiI	GAAGAC	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	188
BsaHI	GRCGYC	2 cut(s)	51, 175
BsaJI	CCNNGG	2 cut(s)	170, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse118I	RCCGGY	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	170, 227
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	174
BshVI	ATCGAT	1 cut(s)	192
BsiEI	CGRYCG	1 cut(s)	182
BsiSI	CCGG	3 cut(s)	40, 75, 178
BslFI	GGGAC	2 cut(s)	303, 356
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	303, 356
Bsp143I	GATC	3 cut(s)	6, 58, 196
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	1 cut(s)	321
BspDI	ATCGAT	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	170, 227
BssMI	GATC	3 cut(s)	6, 58, 196
BssNI	GRCGYC	2 cut(s)	51, 175
BssT1I	CCWWGG	2 cut(s)	170, 227
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	2 cut(s)	51, 175
BstDEI	CTNAG	1 cut(s)	359
BstDSI	CCRYGG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	9, 61, 199
BstMBI	GATC	3 cut(s)	6, 58, 196
BstMCI	CGRYCG	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	170
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	303
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	192
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	7 cut(s)	43, 74, 134, 210, 254, 275, 302
CviKI_1	RGCY	7 cut(s)	43, 74, 134, 210, 254, 275, 302
DdeI	CTNAG	1 cut(s)	359
DinI	GGCGCC	1 cut(s)	176
DpnI	GATC	3 cut(s)	8, 60, 198
DpnII	GATC	3 cut(s)	6, 58, 196
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	2 cut(s)	170, 227
Eco57I	CTGAAG	1 cut(s)	327
EcoT14I	CCWWGG	2 cut(s)	170, 227
EcoT22I	ATGCAT	1 cut(s)	191
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
ErhI	CCWWGG	2 cut(s)	170, 227
FaeI	CATG	1 cut(s)	231
FaiI	YATR	5 cut(s)	187, 215, 229, 267, 272
FaqI	GGGAC	2 cut(s)	303, 356
FatI	CATG	1 cut(s)	227
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	176
HaeII	RGCGCY	1 cut(s)	178
HapII	CCGG	3 cut(s)	40, 75, 178
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	2 cut(s)	51, 175
Hin1II	CATG	1 cut(s)	231
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	91, 244
HpaII	CCGG	3 cut(s)	40, 75, 178
HphI	GGTGA	2 cut(s)	16, 248
Hpy188I	TCNGA	2 cut(s)	49, 104
Hpy188III	TCNNGA	1 cut(s)	64
Hpy99I	CGWCG	2 cut(s)	53, 56
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	1 cut(s)	359
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	2 cut(s)	51, 175
Hsp92II	CATG	1 cut(s)	231
HspAI	GCGC	1 cut(s)	175
KasI	GGCGCC	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	6, 58, 196
LguI	GCTCTTC	1 cut(s)	75
LpnPI	CCDG	6 cut(s)	53, 77, 88, 191, 219, 325
LweI	GCATC	2 cut(s)	30, 198
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	88, 245
MalI	GATC	3 cut(s)	8, 60, 198
MboI	GATC	3 cut(s)	6, 58, 196
MboII	GAAGA	3 cut(s)	68, 92, 121
MflI	RGATCY	1 cut(s)	58
Mly113I	GGCGCC	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	85, 253
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	8 cut(s)	38, 110, 121, 124, 155, 286, 339, 360
Mph1103I	ATGCAT	1 cut(s)	191
MseI	TTAA	1 cut(s)	315
MspI	CCGG	3 cut(s)	40, 75, 178
MwoI	GCNNNNNNNGC	1 cut(s)	355
NarI	GGCGCC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	227
NdeII	GATC	3 cut(s)	6, 58, 196
NlaIII	CATG	1 cut(s)	231
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	2 cut(s)	88, 245
NsiI	ATGCAT	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PleI	GAGTC	2 cut(s)	85, 252
PluTI	GGCGCC	1 cut(s)	178
PpsI	GAGTC	2 cut(s)	85, 252
PspN4I	GGNNCC	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	315
Sau3AI	GATC	3 cut(s)	6, 58, 196
SchI	GAGTC	2 cut(s)	85, 253
SetI	ASST	4 cut(s)	54, 102, 238, 365
SfaNI	GCATC	2 cut(s)	30, 198
SfoI	GGCGCC	1 cut(s)	176
SsiI	CCGC	1 cut(s)	321
SspDI	GGCGCC	1 cut(s)	174
SspMI	CTAG	1 cut(s)	332
StyI	CCWWGG	2 cut(s)	170, 227
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	4 cut(s)	54, 94, 182, 192
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	88, 245
Tsp45I	GTSAC	2 cut(s)	88, 245
TspGWI	ACGGA	2 cut(s)	20, 208
TspRI	CASTG	1 cut(s)	310
XspI	CTAG	1 cut(s)	332
ZraI	GACGTC	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.