Rw4G016770

Acetyltransferase (GNAT) domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
38017876 .. 38018406
531 bp
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UTR
Exon/CDS
Intron
Rw4G016770.1

Sequence Viewer

Length: 372 bp
ATGGATAACACCGATAACAATTCATTGGCGATCACACTCCGTCCTTACAGACTCTCAGATGCTGAGGATTTCTTGATGTATGCTGGTGATGAAAGGTGCAGAGCAGAGATTGGGTACGCGTTAGCTGCCGAGTATTGGGGACAAGGCATAGCAACCAGAGCTGTGAAGATGGCCATCATTGATGTGTTCAAAGAATTCACCGATTTGGTTAGACTTCAAGCTATGGTTTTGGTAGAGAACAAGGGTTCCCAGCGAGTGTTGGAAAAACTTGGGTTTCACAAAGAAGGTCTGTTGAGGAAGTATACGATTCATAAAGGCACAACTAGTGATATTTTCATGTATAGTCTTCTGTCCACTGATCCCATGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

13.97

Weight (kDa)

5.66

Isoelectric Point (pI)

32.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 29 - 93 3.1e-15 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 30 - 92 1.1e-08 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 302
AccII CGCG 1 cut(s) 119
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 135
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 2 cut(s) 190, 218
AhlI ACTAGT 1 cut(s) 323
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 3 cut(s) 125, 161, 221
AluI AGCT 3 cut(s) 125, 161, 221
AlwI GGATC 1 cut(s) 353
AlwNI CAGNNNCTG 1 cut(s) 62
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 98, 190
BalI TGGCCA 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 112
BccI CCATC 2 cut(s) 163, 182
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 1 cut(s) 324
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 247
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse8I GATNNNNATC 1 cut(s) 173
BseJI GATNNNNATC 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 54, 69
BseXI GCAGC 1 cut(s) 112
BseYI CCCAGC 1 cut(s) 249
BsgI GTGCAG 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 173
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 1 cut(s) 173
Bsp143I GATC 2 cut(s) 30, 358
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 2 cut(s) 55, 68
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 247
BspPI GGATC 1 cut(s) 353
BssMI GATC 2 cut(s) 30, 358
BssNAI GTATAC 1 cut(s) 303
Bst1107I GTATAC 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 55, 63
BstFNI CGCG 1 cut(s) 119
BstKTI GATC 2 cut(s) 33, 361
BstMBI GATC 2 cut(s) 30, 358
BstMWI GCNNNNNNNGC 2 cut(s) 125, 158
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 338
BstZ17I GTATAC 1 cut(s) 303
BsuRI GGCC 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 354
CaiI CAGNNNCTG 1 cut(s) 62
Csp6I GTAC 1 cut(s) 115
CviAII CATG 2 cut(s) 337, 364
CviJI RGCY 4 cut(s) 125, 161, 173, 221
CviKI_1 RGCY 4 cut(s) 125, 161, 173, 221
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 2 cut(s) 55, 63
DpnI GATC 2 cut(s) 32, 360
DpnII GATC 2 cut(s) 30, 358
EaeI YGGCCR 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 194
FaeI CATG 2 cut(s) 340, 367
FaiI YATR 8 cut(s) 81, 149, 224, 303, 312, 338, 342, 365
FaqI GGGAC 1 cut(s) 153
FatI CATG 2 cut(s) 336, 363
FblI GTMKAC 1 cut(s) 302
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 324
GluI GCNGC 1 cut(s) 126
GsaI CCCAGC 1 cut(s) 253
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 2 cut(s) 340, 367
HinfI GANTC 2 cut(s) 51, 307
HphI GGTGA 2 cut(s) 98, 190
Hpy166II GTNNAC 2 cut(s) 303, 354
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 2 cut(s) 303, 354
HpyAV CCTTC 1 cut(s) 278
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 158
HpyF3I CTNAG 2 cut(s) 55, 63
Hsp92II CATG 2 cut(s) 340, 367
Kzo9I GATC 2 cut(s) 30, 358
LpnPI CCDG 3 cut(s) 69, 169, 263
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 324
MalI GATC 2 cut(s) 32, 360
MboI GATC 2 cut(s) 30, 358
MboII GAAGA 2 cut(s) 178, 338
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 2 cut(s) 19, 194
MluI ACGCGT 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 173
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 2 cut(s) 58, 288
Mox20I TGGCCA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 173
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 125, 158
NdeII GATC 2 cut(s) 30, 358
NlaIII CATG 2 cut(s) 340, 367
NlaIV GGNNCC 1 cut(s) 247
NmeAIII GCCGAG 1 cut(s) 154
PfeI GAWTC 1 cut(s) 307
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 182
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 2 cut(s) 30, 358
SchI GAGTC 1 cut(s) 45
SetI ASST 5 cut(s) 98, 127, 163, 223, 289
SfaNI GCATC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 182
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 2 cut(s) 19, 194
SspMI CTAG 1 cut(s) 324
TasI AATT 2 cut(s) 19, 194
TfiI GAWTC 1 cut(s) 307
TscAI CASTG 1 cut(s) 361
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 4 cut(s) 12, 105, 299, 325
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 361
XapI RAATTY 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 302
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.