FvH4_4g26610

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001211
Physical Location & Seq
Forward (+)
27927486 .. 27928037
552 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26610.t1

Sequence Viewer

Length: 552 bp
ATGCCAATCACATATGAAATGGAAAACACTGATAACAATTCTTTGGCAATCACACTACGTCCTTACAGACTCTCAGATGCAGAGGATTTCTTAATGTATGCTGGTGATGAAAGGGTGACACAATTCACTCGTTGGAACACTTTGAATTCTAAAGAACAAGCACTCTCCTACATAAAGGAATTCTGCATTCCTCACTGTTACTGCAAATCCATCTGCTTCAATGACCGCTCGATTGGATTTCTCTTCATCAAGCCATATGATGAAGATAATGAGAAGTGCAGAGCAGAGGTTGGGTACGTGGTAGCTGCTGAATATTGGGGACGAGGCATAGCAACCAGAGCTTTGAAGATGGCCATCATTGATGTGTTCAAACAATTTACCGATTTGGTTAGACTTCAAGCTAAGGTTTTAATAGAGAACAAGGGTTCCCAGCGAGTGTTGGAAAAACTAGGATTTCAGAAAGAAGGTCTGTTGCGGAAGTATACCATTCATAGAGGTACAGCTAGTGATCTTTTCATGTATAGTCTTCTATCCACTGATCCCATGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

184

Amino Acids

21.23

Weight (kDa)

6.73

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 17 - 153 3.2e-25 Acetyltransferase (GNAT) domain
Acetyltransf_4 PF13420 21 - 170 1.6e-06 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 58 - 152 7.8e-13 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 228
AccI GTMKAC 1 cut(s) 482
AciI CCGC 2 cut(s) 226, 475
AclWI GGATC 1 cut(s) 533
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 2 cut(s) 145, 179
AfaI GTAC 2 cut(s) 296, 499
AgsI TTSAA 5 cut(s) 145, 220, 346, 370, 398
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 4 cut(s) 305, 341, 401, 503
AluI AGCT 4 cut(s) 305, 341, 401, 503
AlwI GGATC 1 cut(s) 533
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 2 cut(s) 145, 179
AsuHPI GGTGA 2 cut(s) 116, 127
BalI TGGCCA 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 518
BbvI GCAGC 1 cut(s) 292
BccI CCATC 3 cut(s) 218, 343, 362
BfaI CTAG 2 cut(s) 449, 504
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 427
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 518
Bpu10I CCTNAGC 1 cut(s) 402
BsaAI YACGTR 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 353
Bse8I GATNNNNATC 1 cut(s) 353
BseJI GATNNNNATC 1 cut(s) 353
BseMII CTCAG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 292
BseYI CCCAGC 1 cut(s) 429
BsgI GTGCAG 1 cut(s) 298
BshFI GGCC 1 cut(s) 353
BslFI GGGAC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 1 cut(s) 353
Bsp143I GATC 2 cut(s) 508, 538
BspACI CCGC 2 cut(s) 226, 475
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 427
BspPI GGATC 1 cut(s) 533
BsrBI CCGCTC 1 cut(s) 228
BssMI GATC 2 cut(s) 508, 538
BssNAI GTATAC 1 cut(s) 483
Bst1107I GTATAC 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 298
BstDEI CTNAG 2 cut(s) 73, 402
BstKTI GATC 2 cut(s) 511, 541
BstMBI GATC 2 cut(s) 508, 538
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstV1I GCAGC 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 518
BstZ17I GTATAC 1 cut(s) 483
BsuRI GGCC 1 cut(s) 353
BtsIMutI CAGTG 3 cut(s) 27, 193, 534
Csp6I GTAC 2 cut(s) 295, 498
CviAII CATG 2 cut(s) 517, 544
CviJI RGCY 6 cut(s) 253, 305, 341, 353, 401, 503
CviKI_1 RGCY 6 cut(s) 253, 305, 341, 353, 401, 503
CviQI GTAC 2 cut(s) 295, 498
DdeI CTNAG 2 cut(s) 73, 402
DpnI GATC 2 cut(s) 510, 540
DpnII GATC 2 cut(s) 508, 538
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EcoRI GAATTC 2 cut(s) 145, 179
FaeI CATG 2 cut(s) 520, 547
FaqI GGGAC 1 cut(s) 333
FatI CATG 2 cut(s) 516, 543
FauNDI CATATG 2 cut(s) 13, 256
FblI GTMKAC 1 cut(s) 482
Fnu4HI GCNGC 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 2 cut(s) 449, 504
GluI GCNGC 1 cut(s) 306
GsaI CCCAGC 1 cut(s) 433
HaeIII GGCC 1 cut(s) 353
Hin1II CATG 2 cut(s) 520, 547
HinfI GANTC 1 cut(s) 69
HphI GGTGA 2 cut(s) 116, 127
Hpy166II GTNNAC 1 cut(s) 483
Hpy188I TCNGA 2 cut(s) 76, 459
Hpy8I GTNNAC 1 cut(s) 483
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 2 cut(s) 58, 297
HpyCH4V TGCA 4 cut(s) 80, 186, 204, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 2 cut(s) 73, 402
HpySE526I ACGT 2 cut(s) 58, 297
Hsp92II CATG 2 cut(s) 520, 547
Kzo9I GATC 2 cut(s) 508, 538
LpnPI CCDG 3 cut(s) 87, 349, 443
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 449, 504
MaeII ACGT 2 cut(s) 58, 297
MaeIII GTNAC 2 cut(s) 115, 197
MalI GATC 2 cut(s) 510, 540
MbiI CCGCTC 1 cut(s) 228
MboI GATC 2 cut(s) 508, 538
MboII GAAGA 4 cut(s) 235, 275, 358, 518
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 5 cut(s) 37, 122, 145, 179, 374
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 1 cut(s) 63
MmeI TCCRAC 2 cut(s) 113, 420
MnlI CCTC 5 cut(s) 76, 201, 280, 317, 488
Mox20I TGGCCA 1 cut(s) 353
MscI TGGCCA 1 cut(s) 353
MseI TTAA 2 cut(s) 92, 410
MslI CAYNNNNRTG 1 cut(s) 362
Msp20I TGGCCA 1 cut(s) 353
Mva1269I GAATGC 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 338
NdeI CATATG 2 cut(s) 13, 256
NdeII GATC 2 cut(s) 508, 538
NlaIII CATG 2 cut(s) 520, 547
NlaIV GGNNCC 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 115
PctI GAATGC 1 cut(s) 186
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
Ppu21I YACGTR 1 cut(s) 298
PspFI CCCAGC 1 cut(s) 429
PspN4I GGNNCC 1 cut(s) 427
RsaI GTAC 2 cut(s) 296, 499
RsaNI GTAC 2 cut(s) 295, 498
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 2 cut(s) 92, 410
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 2 cut(s) 508, 538
SchI GAGTC 1 cut(s) 63
SfaNI GCATC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 5 cut(s) 37, 122, 145, 179, 374
SsiI CCGC 2 cut(s) 226, 475
SspI AATATT 1 cut(s) 314
SspMI CTAG 2 cut(s) 449, 504
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 2 cut(s) 61, 300
TaqI TCGA 1 cut(s) 230
TasI AATT 5 cut(s) 37, 122, 145, 179, 374
Tru1I TTAA 2 cut(s) 92, 410
Tru9I TTAA 2 cut(s) 92, 410
TscAI CASTG 3 cut(s) 34, 200, 541
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 6 cut(s) 30, 123, 235, 276, 479, 505
TspRI CASTG 3 cut(s) 34, 200, 541
XapI RAATTY 2 cut(s) 145, 179
XmiI GTMKAC 1 cut(s) 482
XspI CTAG 2 cut(s) 449, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.