Rh4BG195700

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001211
Physical Location & Seq
Forward (+)
33708676 .. 33709317
642 bp
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UTR
Exon/CDS
Intron
Rh4BG195700.1

Sequence Viewer

Length: 642 bp
ATGCAAGACCAAAATTGCAAGATTTCAAAAACATGGACTCACTATAACCACCACGATAAATGCAATTTTCCTAGCCTATTCACAATCAGAACCATACCAATCACAGAGGAAATGGATAACACCGATAACAATTCATTGGCGATCACACTCCGTCCTTACAGACTCTCAGATGCTGAGGATTTCTTGATGTATGCTGGTGATGAAAGGGTGACACAATTCACTCGTTGGAACACATTCACTTCTGAAGAACAAGCACACACCTACATTAAGGACTTCTGCATTCCTCACTCTTACTGCAAATCCATCTGCATCAATGACCGTTCGATTGGATTTGTCTTCATCAAGCCACACGGAGATAATGACAAGTGCAGAGCAGAGATTGGGTACGCGTTAGCTGCCGAGTATTGGGGACAAGGCATAGCAACCAGAGCTGTGAAGATGGCCATCATTGATGTGTTCAAAGAATTCACCGATTTGGTTAGACTTCAAGCTATGGTTTTGGTAGAGAACAAGGGTTCCCAGCGAGTGTTGGAAAAACTTGGGTTTCACAAAGAAGGTCTGTTGAGGAAGTATACGATTCATAAAGGCACAACTAGTGATATTTTCATGTATAGTCTTCTGTCCACTGATCCCATGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

213

Amino Acids

24.65

Weight (kDa)

6.44

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 48 - 183 4.3e-26 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 78 - 182 4.7e-12 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 572
AccII CGCG 1 cut(s) 389
AclWI GGATC 1 cut(s) 623
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 464
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 405
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 3 cut(s) 27, 460, 488
AhlI ACTAGT 1 cut(s) 593
AloI GAACNNNNNNTCC 2 cut(s) 500, 532
AluBI AGCT 3 cut(s) 395, 431, 491
AluI AGCT 3 cut(s) 395, 431, 491
AlwI GGATC 1 cut(s) 623
AlwNI CAGNNNCTG 1 cut(s) 173
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 1 cut(s) 464
Asp700I GAANNNNTTC 1 cut(s) 233
AsuHPI GGTGA 3 cut(s) 209, 220, 460
BalI TGGCCA 1 cut(s) 443
BbsI GAAGAC 2 cut(s) 328, 608
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 382
BccI CCATC 3 cut(s) 311, 433, 452
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 2 cut(s) 72, 594
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 517
BmsI GCATC 2 cut(s) 160, 318
BpiI GAAGAC 2 cut(s) 328, 608
Bpu10I CCTNAGC 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 443
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 443
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 165, 180
BseXI GCAGC 1 cut(s) 382
BseYI CCCAGC 1 cut(s) 519
BsgI GTGCAG 1 cut(s) 388
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 1 cut(s) 443
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 423
BsmI GAATGC 1 cut(s) 279
BsnI GGCC 1 cut(s) 443
Bsp143I GATC 2 cut(s) 141, 628
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 2 cut(s) 166, 179
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 1 cut(s) 517
BspPI GGATC 1 cut(s) 623
BssMI GATC 2 cut(s) 141, 628
BssNAI GTATAC 1 cut(s) 573
Bst1107I GTATAC 1 cut(s) 573
Bst4CI ACNGT 1 cut(s) 320
BstDEI CTNAG 2 cut(s) 166, 174
BstFNI CGCG 1 cut(s) 389
BstKTI GATC 2 cut(s) 144, 631
BstMBI GATC 2 cut(s) 141, 628
BstMWI GCNNNNNNNGC 2 cut(s) 395, 428
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 382
BstV2I GAAGAC 2 cut(s) 328, 608
BstZ17I GTATAC 1 cut(s) 573
BsuRI GGCC 1 cut(s) 443
BtsIMutI CAGTG 1 cut(s) 624
CaiI CAGNNNCTG 1 cut(s) 173
Csp6I GTAC 1 cut(s) 385
CviAII CATG 3 cut(s) 33, 607, 634
CviJI RGCY 6 cut(s) 75, 346, 395, 431, 443, 491
CviKI_1 RGCY 6 cut(s) 75, 346, 395, 431, 443, 491
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 2 cut(s) 166, 174
DpnI GATC 2 cut(s) 143, 630
DpnII GATC 2 cut(s) 141, 628
EaeI YGGCCR 1 cut(s) 441
Eco57I CTGAAG 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 464
FaeI CATG 3 cut(s) 36, 610, 637
FaqI GGGAC 1 cut(s) 423
FatI CATG 3 cut(s) 32, 606, 633
FblI GTMKAC 1 cut(s) 572
Fnu4HI GCNGC 1 cut(s) 396
Fsp4HI GCNGC 1 cut(s) 396
FspBI CTAG 2 cut(s) 72, 594
GluI GCNGC 1 cut(s) 396
GsaI CCCAGC 1 cut(s) 523
HaeIII GGCC 1 cut(s) 443
Hin1II CATG 3 cut(s) 36, 610, 637
HinfI GANTC 3 cut(s) 37, 162, 577
HphI GGTGA 3 cut(s) 209, 220, 460
Hpy166II GTNNAC 2 cut(s) 573, 624
Hpy188I TCNGA 3 cut(s) 89, 169, 244
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 2 cut(s) 573, 624
HpyAV CCTTC 1 cut(s) 548
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 7 cut(s) 4, 18, 63, 279, 297, 309, 369
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 428
HpyF3I CTNAG 2 cut(s) 166, 174
Hsp92II CATG 3 cut(s) 36, 610, 637
Kzo9I GATC 2 cut(s) 141, 628
LpnPI CCDG 3 cut(s) 180, 439, 533
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 2 cut(s) 160, 318
MaeI CTAG 2 cut(s) 72, 594
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 143, 630
MboI GATC 2 cut(s) 141, 628
MboII GAAGA 4 cut(s) 257, 328, 448, 608
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 5 cut(s) 13, 64, 130, 215, 464
MluI ACGCGT 1 cut(s) 387
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 2 cut(s) 31, 156
MmeI TCCRAC 2 cut(s) 206, 510
MnlI CCTC 4 cut(s) 100, 169, 294, 558
Mox20I TGGCCA 1 cut(s) 443
MroXI GAANNNNTTC 1 cut(s) 233
MscI TGGCCA 1 cut(s) 443
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 452
Msp20I TGGCCA 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 279
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 2 cut(s) 395, 428
NdeII GATC 2 cut(s) 141, 628
NlaIII CATG 3 cut(s) 36, 610, 637
NlaIV GGNNCC 1 cut(s) 517
NmeAIII GCCGAG 1 cut(s) 424
NmuCI GTSAC 1 cut(s) 208
PctI GAATGC 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 577
PkrI GCNGC 1 cut(s) 397
PleI GAGTC 2 cut(s) 31, 156
PpsI GAGTC 2 cut(s) 31, 156
PspFI CCCAGC 1 cut(s) 519
PspN4I GGNNCC 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 2 cut(s) 141, 628
SchI GAGTC 2 cut(s) 31, 156
SetI ASST 5 cut(s) 263, 397, 433, 493, 559
SfaNI GCATC 2 cut(s) 160, 318
SmiMI CAYNNNNRTG 1 cut(s) 452
SpeI ACTAGT 1 cut(s) 593
Sse9I AATT 5 cut(s) 13, 64, 130, 215, 464
SspMI CTAG 2 cut(s) 72, 594
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 323
TasI AATT 5 cut(s) 13, 64, 130, 215, 464
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 631
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 5 cut(s) 123, 216, 328, 569, 595
TspGWI ACGGA 2 cut(s) 140, 366
TspRI CASTG 1 cut(s) 631
XapI RAATTY 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 2 cut(s) 72, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.