Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001211

Physical Location & Seq

Genomic Coordinates Reverse (-)

17442046 .. 17442327

Gene Structure 282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1196300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGTGTCCTCAAGAATTTCACTGCGTCCTTTCAAAGTCTCTAATACTGATGACTTCCTGAAATGGACGAGCGATGACAAAGTGATGCGCTATCTGAGATGGAACACCACAACCTCTAGGGAAGAAGCCTTGGTATACATTGTGAAAGCTGTTATACCACGCCCATGGTGCCAGTCCGTATGTTTGGATGACCATTCGATTGGATATGTTTCGGTCAAGCCCGAATCGGACGATGACACATGTAGAGCCCATGTTAGCTATGTTGTGTCTGCTGAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

94

Amino Acids

10.77

Weight (kDa)

6.05

Isoelectric Point (pI)

28.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	5 - 92	1.6e-08	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22560
fragaria_vesca	FvH4_4g26610 FvH4_6g03890
malus_domestica	MD04G1217600.v1.1 MD13G1195500.v1.1 MD16G1196300.v1.1
prunus_persica	Prupe.1G016400_v2.0.a1 Prupe.1G016500_v2.0.a1 Prupe.6G337400_v2.0.a1
pyrus_communis	pycom04g19350 pycom13g16770 pycom13g16780
rosa_chinensis	RchiOBHm_Chr3g0452461 RchiOBHm_Chr4g0415671 RchiOBHm_Chr4g0415681 RchiOBHm_Chr4g0415701 RchiOBHm_Chr4g0415711 RchiOBHm_Chr6g0273471
rosa_laevigata	RLG00000008048 RLG00000008049 RLG00000013614 RLG00000025600
rosa_multiflora	Rmu_sc0004536.1_g000003 Rmu_sc0004536.1_g000004 Rmu_sc0011680.1_g000006 Rmu_sc0026940.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355380 Rroxscaffold_6G00429470 Rroxscaffold_7G00195300
rosa_rugosa	Rorug02G0641100 Rorug04G0113600 Rorug04G0113700 Rorug04G0136300 Rorug04G0136400 Rorug06G0075600
rosa_samantha	Rh3AG042800 Rh3BG044500 Rh3CG043100 Rh3DG043900 Rh4AG197200 Rh4AG197300 Rh4BG195700 Rh4BG195800 Rh4CG208000 Rh4CG208100 Rh4CG208300 Rh4DG195000 Rh4DG195100 Rh6AG190300 Rh6BG193800 Rh6CG193300 Rh6DG184900
rosa_wichuraiana	Rw3G003310 Rw4G016770 Rw4G016780 Rw6G016650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	15
AfaI	GTAC	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	2 cut(s)	149, 258
AluI	AGCT	2 cut(s)	149, 258
Alw26I	GTCTC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	250
BccI	CCATC	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	1 cut(s)	117
BmcAI	AGTACT	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	170
BmsI	GCATC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	129, 164
Bse1I	ACTGG	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	129, 164
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	86, 264
BseNI	ACTGG	1 cut(s)	172
BshNI	GGYRCC	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp19I	CCATGG	1 cut(s)	164
BspCNI	CTCAG	2 cut(s)	87, 265
BspLI	GGNNCC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	129, 164
BssNAI	GTATAC	1 cut(s)	136
BssT1I	CCWWGG	2 cut(s)	129, 164
Bst1107I	GTATAC	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	95, 273
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	243
BstXI	CCANNNNNNTGG	2 cut(s)	165, 200
BstZ17I	GTATAC	1 cut(s)	136
BtgI	CCRYGG	1 cut(s)	164
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	90
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	3 cut(s)	165, 240, 251
CviJI	RGCY	5 cut(s)	128, 149, 220, 248, 258
CviKI_1	RGCY	5 cut(s)	128, 149, 220, 248, 258
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	2 cut(s)	95, 273
Eco130I	CCWWGG	2 cut(s)	129, 164
Eco24I	GRGCYC	1 cut(s)	250
EcoT14I	CCWWGG	2 cut(s)	129, 164
EcoT38I	GRGCYC	1 cut(s)	250
ErhI	CCWWGG	2 cut(s)	129, 164
FaeI	CATG	3 cut(s)	168, 243, 254
FaiI	YATR	8 cut(s)	136, 155, 166, 181, 207, 241, 252, 261
FatI	CATG	3 cut(s)	164, 239, 250
FblI	GTMKAC	1 cut(s)	135
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	250
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	89
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	3 cut(s)	168, 243, 254
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	96, 229
Hpy188III	TCNNGA	2 cut(s)	12, 58
Hpy8I	GTNNAC	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	95, 273
Hsp92II	CATG	3 cut(s)	168, 243, 254
HspAI	GCGC	1 cut(s)	88
LpnPI	CCDG	2 cut(s)	71, 185
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	117
MboII	GAAGA	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	1 cut(s)	15
MnlI	CCTC	2 cut(s)	19, 124
MslI	CAYNNNNRTG	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	168
NcoI	CCATGG	1 cut(s)	164
NlaIII	CATG	3 cut(s)	168, 243, 254
NlaIV	GGNNCC	1 cut(s)	170
NspI	RCATGY	1 cut(s)	243
PciI	ACATGT	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	224
PscI	ACATGT	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	170
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	163
ScaI	AGTACT	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	3 cut(s)	116, 151, 260
SfaNI	GCATC	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	1 cut(s)	15
SspMI	CTAG	1 cut(s)	117
StyI	CCWWGG	2 cut(s)	129, 164
TaqI	TCGA	1 cut(s)	197
TaqII	GACCGA	1 cut(s)	202
TasI	AATT	1 cut(s)	15
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	224
TscAI	CASTG	1 cut(s)	27
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	15
XceI	RCATGY	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	1 cut(s)	117
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.