Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001211

Physical Location & Seq

Genomic Coordinates Forward (+)

30023580 .. 30024086

Gene Structure 507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1217600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGACTCAAAATTGATCACTCTCCGGCCATTCAAGCTATCCGATGCCGATGATCTCATGTCATACGCCGGAGATGATCAAGTGACGCGATCCCTCCGATGGAAGACTTTGACAACCAAAGACGAAGCGTTGACTTTCATCAAGGATGTGTGCATCCCCCACCCATGGCGCCGGTCAATATGCATCGACGACCGTTCGATCGGATTCGTAACCGTCTTTCCAGGATCAAGTGATGACAGGCATAAGGCAGATTTAGGGTATGCCATAGCTGCAAAGTATTGGGGCCAAGGGATAACCACCAAAGCAGTTGAGGTTGCCATCTCTCAAGTTTTCAAGGACTCCCCTAGTTTGGTCAGGTTGCAAGCTTTCGCTGACGTGGAGAACAAGGCATCTCAGAGGGTTTTGGAGAAAGCTGGGTTCCAGAAGGAGGGTGTGTTGAGGAGATATGGATATCTCAAGGGAAATATAAAAGATTTGGTAATTTATAGTTTGCTATCAACAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

169

Amino Acids

18.9

Weight (kDa)

8.81

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	6 - 141	7.3e-25	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	57 - 140	1.5e-08	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22560
fragaria_vesca	FvH4_4g26610 FvH4_6g03890
malus_domestica	MD04G1217600.v1.1 MD13G1195500.v1.1 MD16G1196300.v1.1
prunus_persica	Prupe.1G016400_v2.0.a1 Prupe.1G016500_v2.0.a1 Prupe.6G337400_v2.0.a1
pyrus_communis	pycom04g19350 pycom13g16770 pycom13g16780
rosa_chinensis	RchiOBHm_Chr3g0452461 RchiOBHm_Chr4g0415671 RchiOBHm_Chr4g0415681 RchiOBHm_Chr4g0415701 RchiOBHm_Chr4g0415711 RchiOBHm_Chr6g0273471
rosa_laevigata	RLG00000008048 RLG00000008049 RLG00000013614 RLG00000025600
rosa_multiflora	Rmu_sc0004536.1_g000003 Rmu_sc0004536.1_g000004 Rmu_sc0011680.1_g000006 Rmu_sc0026940.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355380 Rroxscaffold_6G00429470 Rroxscaffold_7G00195300
rosa_rugosa	Rorug02G0641100 Rorug04G0113600 Rorug04G0113700 Rorug04G0136300 Rorug04G0136400 Rorug06G0075600
rosa_samantha	Rh3AG042800 Rh3BG044500 Rh3CG043100 Rh3DG043900 Rh4AG197200 Rh4AG197300 Rh4BG195700 Rh4BG195800 Rh4CG208000 Rh4CG208100 Rh4CG208300 Rh4DG195000 Rh4DG195100 Rh6AG190300 Rh6BG193800 Rh6CG193300 Rh6DG184900
rosa_wichuraiana	Rw3G003310 Rw4G016770 Rw4G016780 Rw6G016650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AccII	CGCG	1 cut(s)	88
AclWI	GGATC	2 cut(s)	84, 232
AcoI	YGGCCR	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	169
AfiI	CCNNNNNNNGG	4 cut(s)	99, 165, 349, 427
AgsI	TTSAA	2 cut(s)	34, 334
AjiI	CACGTC	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	4 cut(s)	37, 269, 365, 413
AluI	AGCT	4 cut(s)	37, 269, 365, 413
AlwI	GGATC	2 cut(s)	84, 232
AoxI	GGCC	2 cut(s)	26, 283
ApeKI	GCWGC	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	2 cut(s)	93, 326
BciT130I	CCWGG	1 cut(s)	222
BclI	TGATCA	2 cut(s)	15, 76
BfaI	CTAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	172
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	222
BmgBI	CACGTC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	3 cut(s)	170, 284, 419
BmrFI	CCNGG	1 cut(s)	222
BmsI	GCATC	4 cut(s)	34, 162, 192, 398
BpiI	GAAGAC	1 cut(s)	110
BpuEI	CTTGAG	2 cut(s)	309, 440
BsaHI	GRCGYC	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	164, 286
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 165, 349, 427
Bse118I	RCCGGY	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	164, 286
BseGI	GGATG	2 cut(s)	151, 153
BseLI	CCNNNNNNNGG	4 cut(s)	99, 165, 349, 427
BseMII	CTCAG	1 cut(s)	407
BseRI	GAGGAG	1 cut(s)	454
BseXI	GCAGC	1 cut(s)	256
BseYI	CCCAGC	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	88
Bsh1285I	CGRYCG	2 cut(s)	193, 201
BshFI	GGCC	2 cut(s)	28, 285
BshNI	GGYRCC	1 cut(s)	168
BsiEI	CGRYCG	2 cut(s)	193, 201
BsiSI	CCGG	3 cut(s)	25, 69, 172
BslI	CCNNNNNNNGG	4 cut(s)	99, 165, 349, 427
BsnI	GGCC	2 cut(s)	28, 285
Bsp143I	GATC	6 cut(s)	15, 52, 76, 89, 198, 224
Bsp19I	CCATGG	1 cut(s)	164
BspANI	GGCC	2 cut(s)	28, 285
BspCNI	CTCAG	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	170, 284, 419
BspPI	GGATC	2 cut(s)	84, 232
BspT107I	GGYRCC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	164, 286
BssMI	GATC	6 cut(s)	15, 52, 76, 89, 198, 224
BssNI	GRCGYC	1 cut(s)	169
BssT1I	CCWWGG	2 cut(s)	164, 286
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	194, 214
BstACI	GRCGYC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	1 cut(s)	393
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	2 cut(s)	151, 153
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	6 cut(s)	18, 55, 79, 92, 201, 227
BstMBI	GATC	6 cut(s)	15, 52, 76, 89, 198, 224
BstMCI	CGRYCG	2 cut(s)	193, 201
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 269
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	28, 285
BtgI	CCRYGG	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	376
BtsCI	GGATG	2 cut(s)	151, 153
Cac8I	GCNNGC	1 cut(s)	363
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	1 cut(s)	94
CviAII	CATG	2 cut(s)	58, 165
CviJI	RGCY	6 cut(s)	28, 37, 269, 285, 365, 413
CviKI_1	RGCY	6 cut(s)	28, 37, 269, 285, 365, 413
DdeI	CTNAG	1 cut(s)	393
DinI	GGCGCC	1 cut(s)	170
DpnI	GATC	6 cut(s)	17, 54, 78, 91, 200, 226
DpnII	GATC	6 cut(s)	15, 52, 76, 89, 198, 224
EaeI	YGGCCR	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	164, 286
Eco32I	GATATC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	164, 286
EcoT22I	ATGCAT	1 cut(s)	185
EgeI	GGCGCC	1 cut(s)	170
EheI	GGCGCC	1 cut(s)	170
ErhI	CCWWGG	2 cut(s)	164, 286
FaeI	CATG	2 cut(s)	61, 168
FatI	CATG	2 cut(s)	57, 164
FbaI	TGATCA	2 cut(s)	15, 76
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	2 cut(s)	140, 158
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	270
GsaI	CCCAGC	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	28, 285
HapII	CCGG	3 cut(s)	25, 69, 172
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	61, 168
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	3 cut(s)	5, 204, 338
HpaII	CCGG	3 cut(s)	25, 69, 172
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	4 cut(s)	43, 98, 203, 396
Hpy188III	TCNNGA	1 cut(s)	421
Hpy8I	GTNNAC	1 cut(s)	132
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	2 cut(s)	194, 214
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	4 cut(s)	153, 183, 272, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 269
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	2 cut(s)	61, 168
HspAI	GCGC	1 cut(s)	169
KasI	GGCGCC	1 cut(s)	168
Ksp22I	TGATCA	2 cut(s)	15, 76
Kzo9I	GATC	6 cut(s)	15, 52, 76, 89, 198, 224
LpnPI	CCDG	9 cut(s)	38, 82, 185, 207, 223, 234, 340, 399, 434
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	4 cut(s)	34, 162, 192, 398
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	2 cut(s)	82, 208
MalI	GATC	6 cut(s)	17, 54, 78, 91, 200, 226
MboI	GATC	6 cut(s)	15, 52, 76, 89, 198, 224
MboII	GAAGA	1 cut(s)	115
MluCI	AATT	2 cut(s)	11, 480
Mly113I	GGCGCC	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	5 cut(s)	104, 304, 390, 421, 432
Mph1103I	ATGCAT	1 cut(s)	185
MseI	TTAA	1 cut(s)	505
MspI	CCGG	3 cut(s)	25, 69, 172
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	34, 269
NarI	GGCGCC	1 cut(s)	169
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	6 cut(s)	15, 52, 76, 89, 198, 224
NlaIII	CATG	2 cut(s)	61, 168
NlaIV	GGNNCC	3 cut(s)	170, 284, 419
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	204
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	271
Ple19I	CGATCG	1 cut(s)	201
PleI	GAGTC	1 cut(s)	332
PluTI	GGCGCC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	3 cut(s)	170, 284, 419
PspPI	GGNCC	1 cut(s)	283
PvuI	CGATCG	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	505
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	6 cut(s)	15, 52, 76, 89, 198, 224
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	222
SetI	ASST	7 cut(s)	39, 271, 315, 359, 367, 378, 415
SfaNI	GCATC	4 cut(s)	34, 162, 192, 398
SfoI	GGCGCC	1 cut(s)	170
SmlI	CTYRAG	2 cut(s)	324, 455
SmoI	CTYRAG	2 cut(s)	324, 455
Sse9I	AATT	2 cut(s)	11, 480
SspDI	GGCGCC	1 cut(s)	168
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	2 cut(s)	164, 286
TaaI	ACNGT	2 cut(s)	194, 214
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	2 cut(s)	186, 197
TasI	AATT	2 cut(s)	11, 480
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	505
Tru9I	TTAA	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	127
XspI	CTAG	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.