Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001211

Physical Location & Seq

Genomic Coordinates Forward (+)

47020259 .. 47020774

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025600

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGAGATCAACTTGTCAAGCATCACCGTCCGTCCATTCCGGCTATCAGATGTCGAAGATCTCATGACATATGCCGGAGACGAGCAAGTGACTCGAAACCTCCGATGGAAGACTTTGACAACCAAAGAGGAGGCTTTCACTTTCCTCAAAGATGTGTGTATCCCACACCCTTGGCGCCGGTCGATATGCATCGATGATAGTTCAATCGGCTTCATATCCGTCTTTCCATGGTCCGGTGATGAGAGTCACAAGGCTGACATGGGGTATGGTATAGCCCCAAAGTATTGGGGACAAGGAATAGCCACTGAAGTAGTTAAGACTGCCGTTCCTCTAGTGTTCAGGGACTTGCCTCATTTGCTTAGGTTGCAAGCTTTTGCATATTCAGAGAATAAGGCCTCTCAGAGGGTACTGTTGGAGAAAGCTGGGTTCCAAAGGGAGGGTTTGTTGAGGAAATATGAATATATTAAGGGAGAAATTATTGATATGGTTGTTTATAGTTTTCTACCAACAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

172

Amino Acids

19.64

Weight (kDa)

5.95

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	8 - 144	7.2e-23	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	59 - 143	3.7e-08	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22560
fragaria_vesca	FvH4_4g26610 FvH4_6g03890
malus_domestica	MD04G1217600.v1.1 MD13G1195500.v1.1 MD16G1196300.v1.1
prunus_persica	Prupe.1G016400_v2.0.a1 Prupe.1G016500_v2.0.a1 Prupe.6G337400_v2.0.a1
pyrus_communis	pycom04g19350 pycom13g16770 pycom13g16780
rosa_chinensis	RchiOBHm_Chr3g0452461 RchiOBHm_Chr4g0415671 RchiOBHm_Chr4g0415681 RchiOBHm_Chr4g0415701 RchiOBHm_Chr4g0415711 RchiOBHm_Chr6g0273471
rosa_laevigata	RLG00000008048 RLG00000008049 RLG00000013614 RLG00000025600
rosa_multiflora	Rmu_sc0004536.1_g000003 Rmu_sc0004536.1_g000004 Rmu_sc0011680.1_g000006 Rmu_sc0026940.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355380 Rroxscaffold_6G00429470 Rroxscaffold_7G00195300
rosa_rugosa	Rorug02G0641100 Rorug04G0113600 Rorug04G0113700 Rorug04G0136300 Rorug04G0136400 Rorug06G0075600
rosa_samantha	Rh3AG042800 Rh3BG044500 Rh3CG043100 Rh3DG043900 Rh4AG197200 Rh4AG197300 Rh4BG195700 Rh4BG195800 Rh4CG208000 Rh4CG208100 Rh4CG208300 Rh4DG195000 Rh4DG195100 Rh6AG190300 Rh6BG193800 Rh6CG193300 Rh6DG184900
rosa_wichuraiana	Rw3G003310 Rw4G016770 Rw4G016780 Rw6G016650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	3 cut(s)	233, 402, 436
AgsI	TTSAA	1 cut(s)	204
AluBI	AGCT	2 cut(s)	371, 422
AluI	AGCT	2 cut(s)	371, 422
Alw26I	GTCTC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	16, 248
AvaII	GGWCC	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	116
BccI	CCATC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	308
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciVI	GTATCC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	178
BfuI	GTATCC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	2 cut(s)	176, 428
BmsI	GCATC	2 cut(s)	30, 198
BpiI	GAAGAC	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	170, 227
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 402, 436
Bse118I	RCCGGY	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	170, 227
BseJI	GATNNNNATC	1 cut(s)	188
BseLI	CCNNNNNNNGG	3 cut(s)	233, 402, 436
BseMII	CTCAG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	143
BseYI	CCCAGC	1 cut(s)	422
Bsh1285I	CGRYCG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	395
BshNI	GGYRCC	1 cut(s)	174
BshVI	ATCGAT	1 cut(s)	192
BsiEI	CGRYCG	1 cut(s)	182
BsiSI	CCGG	4 cut(s)	40, 75, 178, 234
BslFI	GGGAC	2 cut(s)	303, 356
BslI	CCNNNNNNNGG	3 cut(s)	233, 402, 436
BsmAI	GTCTC	1 cut(s)	72
BsmBI	CGTCTC	1 cut(s)	72
BsmFI	GGGAC	2 cut(s)	303, 356
BsnI	GGCC	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	6, 58
Bsp19I	CCATGG	1 cut(s)	227
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	176, 428
BspT107I	GGYRCC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	170, 227
BssMI	GATC	2 cut(s)	6, 58
BssNI	GRCGYC	1 cut(s)	175
BssT1I	CCWWGG	2 cut(s)	170, 227
Bst4CI	ACNGT	2 cut(s)	28, 411
BstACI	GRCGYC	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	2 cut(s)	359, 399
BstDSI	CCRYGG	1 cut(s)	227
BstENI	CCTNNNNNAGG	1 cut(s)	400
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	2 cut(s)	9, 61
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	6, 58
BstMCI	CGRYCG	1 cut(s)	182
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 364
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	2 cut(s)	171, 285
BstYI	RGATCY	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	395
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	369
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	231
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	3 cut(s)	64, 228, 259
CviJI	RGCY	9 cut(s)	43, 134, 210, 254, 275, 302, 371, 395, 422
CviKI_1	RGCY	9 cut(s)	43, 134, 210, 254, 275, 302, 371, 395, 422
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	2 cut(s)	359, 399
DinI	GGCGCC	1 cut(s)	176
DpnI	GATC	2 cut(s)	8, 60
DpnII	GATC	2 cut(s)	6, 58
Eco130I	CCWWGG	2 cut(s)	170, 227
Eco147I	AGGCCT	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	327
EcoNI	CCTNNNNNAGG	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	170, 227
EcoT22I	ATGCAT	1 cut(s)	191
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
ErhI	CCWWGG	2 cut(s)	170, 227
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	3 cut(s)	67, 231, 262
FaqI	GGGAC	2 cut(s)	303, 356
FatI	CATG	3 cut(s)	63, 227, 258
FauNDI	CATATG	1 cut(s)	70
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	176
GsaI	CCCAGC	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	4 cut(s)	40, 75, 178, 234
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	67, 231, 262
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	2 cut(s)	91, 244
HpaII	CCGG	4 cut(s)	40, 75, 178, 234
HphI	GGTGA	2 cut(s)	16, 248
Hpy188I	TCNGA	4 cut(s)	49, 104, 385, 402
Hpy188III	TCNNGA	1 cut(s)	64
HpyCH4III	ACNGT	2 cut(s)	28, 411
HpyCH4V	TGCA	3 cut(s)	189, 367, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 364
HpyF3I	CTNAG	2 cut(s)	359, 399
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	67, 231, 262
HspAI	GCGC	1 cut(s)	175
KasI	GGCGCC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	6, 58
LpnPI	CCDG	6 cut(s)	53, 88, 191, 247, 325, 408
LweI	GCATC	2 cut(s)	30, 198
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	2 cut(s)	88, 245
MalI	GATC	2 cut(s)	8, 60
MboI	GATC	2 cut(s)	6, 58
MboII	GAAGA	2 cut(s)	68, 121
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	1 cut(s)	474
Mly113I	GGCGCC	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	85, 253
MmeI	TCCRAC	1 cut(s)	393
Mph1103I	ATGCAT	1 cut(s)	191
MseI	TTAA	2 cut(s)	315, 465
MspI	CCGG	4 cut(s)	40, 75, 178, 234
MwoI	GCNNNNNNNGC	2 cut(s)	355, 364
NarI	GGCGCC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	227
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	2 cut(s)	6, 58
NlaIII	CATG	3 cut(s)	67, 231, 262
NlaIV	GGNNCC	2 cut(s)	176, 428
NmuCI	GTSAC	2 cut(s)	88, 245
NsiI	ATGCAT	1 cut(s)	191
PagI	TCATGA	1 cut(s)	63
PceI	AGGCCT	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PleI	GAGTC	2 cut(s)	85, 252
PluTI	GGCGCC	1 cut(s)	178
PpsI	GAGTC	2 cut(s)	85, 252
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	176, 428
PspPI	GGNCC	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	315, 465
Sau3AI	GATC	2 cut(s)	6, 58
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	2 cut(s)	85, 253
SetI	ASST	4 cut(s)	102, 365, 373, 424
SfaNI	GCATC	2 cut(s)	30, 198
SfoI	GGCGCC	1 cut(s)	176
SinI	GGWCC	1 cut(s)	231
Sse9I	AATT	1 cut(s)	474
SseBI	AGGCCT	1 cut(s)	395
SspDI	GGCGCC	1 cut(s)	174
SspMI	CTAG	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	395
StyI	CCWWGG	2 cut(s)	170, 227
TaaI	ACNGT	2 cut(s)	28, 411
TaqI	TCGA	4 cut(s)	54, 94, 182, 192
TasI	AATT	1 cut(s)	474
Tru1I	TTAA	2 cut(s)	315, 465
Tru9I	TTAA	2 cut(s)	315, 465
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	88, 245
Tsp45I	GTSAC	2 cut(s)	88, 245
TspDTI	ATGAA	2 cut(s)	202, 471
TspGWI	ACGGA	2 cut(s)	20, 208
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	400
XspI	CTAG	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.