Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001211

Physical Location & Seq

Genomic Coordinates Forward (+)

17863163 .. 17863789

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0113700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGGCGTTGTCGCTGGCATTGTCGGGCTGCGAAGGTTCAGAACGTGCTGGGTTGAGTTCGACGCCGAGTTTGCCGACTTCTGTGGAGGCGGTCGGAGGGTTGGGGATGTCCCATGTGGCGTTGAAGGGGCTAACGGTGCTGGAAGGGGTTGAGGCGGCTATGGAGGTGGGCTTGGGATCGGCGGCTGCTGCAAGTGCATCACTGGCTCTTCCGAAAATCTCAGCGGGAAACCCTAATTTTGAATTAGGGTTGACCGCTGGGTTGGCTGGGTTAACTAGGCCAGAGCTGCAGCTTGTTGGGCCAAGCCGTAATTCTGATGGGGACAACATGCAGGGCTTTACTGCTGGGCCTGTTTCTATTGAAAAACATTCAAAGGTAGCTTTGGGTGTGAAGAGGAAGCAGTGCAAGCCGAGTTTAGCGATTATACCTCGGGAGTTTCAGCTGGGTGAATTGGTGGAGGTCCCGATTTCTTTGGGGCCAGCTCCAAAGAAAAAAGGTCGTCCTTGCAAGCATACTTTGGCCAAGAAAATTGAAGGTAATAATGCAGGTTCGGATATAAGCTCCAACTCGACAAGTTTCTATGACGTTTCTAGTTTCTTGCTTGTACCACAATTGCGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

208

Amino Acids

21.26

Weight (kDa)

7.72

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22560
fragaria_vesca	FvH4_4g26610 FvH4_6g03890
malus_domestica	MD04G1217600.v1.1 MD13G1195500.v1.1 MD16G1196300.v1.1
prunus_persica	Prupe.1G016400_v2.0.a1 Prupe.1G016500_v2.0.a1 Prupe.6G337400_v2.0.a1
pyrus_communis	pycom04g19350 pycom13g16770 pycom13g16780
rosa_chinensis	RchiOBHm_Chr3g0452461 RchiOBHm_Chr4g0415671 RchiOBHm_Chr4g0415681 RchiOBHm_Chr4g0415701 RchiOBHm_Chr4g0415711 RchiOBHm_Chr6g0273471
rosa_laevigata	RLG00000008048 RLG00000008049 RLG00000013614 RLG00000025600
rosa_multiflora	Rmu_sc0004536.1_g000003 Rmu_sc0004536.1_g000004 Rmu_sc0011680.1_g000006 Rmu_sc0026940.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355380 Rroxscaffold_6G00429470 Rroxscaffold_7G00195300
rosa_rugosa	Rorug02G0641100 Rorug04G0113600 Rorug04G0113700 Rorug04G0136300 Rorug04G0136400 Rorug06G0075600
rosa_samantha	Rh3AG042800 Rh3BG044500 Rh3CG043100 Rh3DG043900 Rh4AG197200 Rh4AG197300 Rh4BG195700 Rh4BG195800 Rh4CG208000 Rh4CG208100 Rh4CG208300 Rh4DG195000 Rh4DG195100 Rh6AG190300 Rh6BG193800 Rh6CG193300 Rh6DG184900
rosa_wichuraiana	Rw3G003310 Rw4G016770 Rw4G016780 Rw6G016650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	539
AciI	CCGC	5 cut(s)	92, 158, 185, 227, 258
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	609
AgsI	TTSAA	5 cut(s)	127, 245, 365, 375, 536
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	6 cut(s)	289, 295, 383, 445, 485, 564
AluI	AGCT	6 cut(s)	289, 295, 383, 445, 485, 564
AlwI	GGATC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	5 cut(s)	281, 302, 350, 479, 522
ApeKI	GCWGC	5 cut(s)	30, 188, 191, 289, 292
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AspS9I	GGNCC	4 cut(s)	302, 350, 463, 479
AsuHPI	GGTGA	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	432
AvaII	GGWCC	1 cut(s)	463
BalI	TGGCCA	1 cut(s)	524
BbvI	GCAGC	5 cut(s)	17, 175, 178, 276, 304
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	294
BfaI	CTAG	2 cut(s)	279, 594
BfmI	CTRYAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	539
BisI	GCNGC	7 cut(s)	31, 159, 186, 189, 192, 290, 293
BlsI	GCNGC	7 cut(s)	32, 160, 187, 190, 193, 291, 294
Bme18I	GGWCC	1 cut(s)	463
BmeT110I	CYCGRG	1 cut(s)	432
BmgT120I	GGNCC	4 cut(s)	302, 350, 463, 479
BmiI	GGNNCC	2 cut(s)	465, 480
BmsI	GCATC	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	431
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	210
BseXI	GCAGC	5 cut(s)	17, 175, 178, 276, 304
BseYI	CCCAGC	5 cut(s)	50, 260, 269, 347, 445
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	5 cut(s)	283, 304, 352, 481, 524
BsiEI	CGRYCG	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	432
BslFI	GGGAC	3 cut(s)	97, 338, 449
BsmFI	GGGAC	3 cut(s)	97, 338, 449
BsnI	GGCC	5 cut(s)	283, 304, 352, 481, 524
BsoBI	CYCGRG	1 cut(s)	432
Bsp143I	GATC	1 cut(s)	179
BspACI	CCGC	5 cut(s)	92, 158, 185, 227, 258
BspANI	GGCC	5 cut(s)	283, 304, 352, 481, 524
BspCNI	CTCAG	1 cut(s)	236
BspLI	GGNNCC	2 cut(s)	465, 480
BspMAI	CTGCAG	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	539
BspPI	GGATC	1 cut(s)	187
BspQI	GCTCTTC	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	1 cut(s)	179
BssNI	GRCGYC	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	2 cut(s)	216, 389
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	4 cut(s)	18, 410, 483, 512
BstDEI	CTNAG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	179
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	9 cut(s)	73, 139, 191, 197, 206, 266, 289, 301, 409
BstNSI	RCATGY	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	5 cut(s)	17, 175, 178, 276, 304
BsuRI	GGCC	5 cut(s)	283, 304, 352, 481, 524
BtsCI	GGATG	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	2 cut(s)	203, 410
BveI	ACCTGC	1 cut(s)	539
Cac8I	GCNNGC	4 cut(s)	18, 410, 483, 512
Cfr13I	GGNCC	4 cut(s)	302, 350, 463, 479
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	608
CviAII	CATG	2 cut(s)	116, 331
CviQI	GTAC	1 cut(s)	608
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	1 cut(s)	181
DpnII	GATC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	2 cut(s)	216, 389
EarI	CTCTTC	2 cut(s)	216, 389
Eco47I	GGWCC	1 cut(s)	463
Eco88I	CYCGRG	1 cut(s)	432
EcoO109I	RGGNCCY	1 cut(s)	463
FaeI	CATG	2 cut(s)	119, 334
FaiI	YATR	7 cut(s)	117, 164, 332, 428, 516, 560, 585
FaqI	GGGAC	3 cut(s)	97, 338, 449
FatI	CATG	2 cut(s)	115, 330
FauI	CCCGC	1 cut(s)	220
Fnu4HI	GCNGC	7 cut(s)	31, 159, 186, 189, 192, 290, 293
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	7 cut(s)	31, 159, 186, 189, 192, 290, 293
FspBI	CTAG	2 cut(s)	279, 594
GluI	GCNGC	7 cut(s)	31, 159, 186, 189, 192, 290, 293
GsaI	CCCAGC	5 cut(s)	54, 264, 273, 351, 449
HaeIII	GGCC	5 cut(s)	283, 304, 352, 481, 524
HgaI	GACGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	119, 334
HincII	GTYRAC	2 cut(s)	255, 276
HindII	GTYRAC	2 cut(s)	255, 276
HpaI	GTTAAC	1 cut(s)	276
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	2 cut(s)	255, 276
Hpy188I	TCNGA	5 cut(s)	43, 98, 216, 319, 556
Hpy188III	TCNNGA	2 cut(s)	434, 466
Hpy8I	GTNNAC	2 cut(s)	255, 276
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	4 cut(s)	29, 121, 140, 530
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	46, 588
HpyCH4V	TGCA	7 cut(s)	194, 200, 292, 334, 408, 510, 548
HpyF10VI	GCNNNNNNNGC	9 cut(s)	73, 139, 191, 197, 206, 266, 289, 301, 409
HpyF3I	CTNAG	1 cut(s)	223
HpySE526I	ACGT	2 cut(s)	46, 588
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	119, 334
KspAI	GTTAAC	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	179
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	490, 569
Lsp1109I	GCAGC	5 cut(s)	17, 175, 178, 276, 304
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	279, 594
MaeII	ACGT	2 cut(s)	46, 588
MalI	GATC	1 cut(s)	181
MboI	GATC	1 cut(s)	179
MboII	GAAGA	2 cut(s)	203, 406
MfeI	CAATTG	1 cut(s)	614
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	6 cut(s)	238, 245, 313, 452, 531, 614
MluNI	TGGCCA	1 cut(s)	524
MmeI	TCCRAC	2 cut(s)	76, 591
MnlI	CCTC	7 cut(s)	82, 92, 148, 160, 390, 441, 454
Mox20I	TGGCCA	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	524
MspA1I	CMGCKG	3 cut(s)	227, 260, 445
MunI	CAATTG	1 cut(s)	614
MwoI	GCNNNNNNNGC	9 cut(s)	73, 139, 191, 197, 206, 266, 289, 301, 409
NdeII	GATC	1 cut(s)	179
NlaIII	CATG	2 cut(s)	119, 334
NlaIV	GGNNCC	2 cut(s)	465, 480
NmeAIII	GCCGAG	2 cut(s)	93, 438
NspI	RCATGY	1 cut(s)	334
PciSI	GCTCTTC	1 cut(s)	216
PkrI	GCNGC	7 cut(s)	32, 160, 187, 190, 193, 291, 294
PpuMI	RGGWCCY	1 cut(s)	463
Psp5II	RGGWCCY	1 cut(s)	463
PspFI	CCCAGC	5 cut(s)	50, 260, 269, 347, 445
PspN4I	GGNNCC	2 cut(s)	465, 480
PspPI	GGNCC	4 cut(s)	302, 350, 463, 479
PspPPI	RGGWCCY	1 cut(s)	463
PstI	CTGCAG	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	445
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	7 cut(s)	31, 159, 186, 189, 192, 290, 293
Sau3AI	GATC	1 cut(s)	179
Sau96I	GGNCC	4 cut(s)	302, 350, 463, 479
SfaNI	GCATC	1 cut(s)	209
SfcI	CTRYAG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	463
Sse9I	AATT	6 cut(s)	238, 245, 313, 452, 531, 614
SsiI	CCGC	5 cut(s)	92, 158, 185, 227, 258
SspMI	CTAG	2 cut(s)	279, 594
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	2 cut(s)	49, 591
TaqI	TCGA	2 cut(s)	62, 572
TasI	AATT	6 cut(s)	238, 245, 313, 452, 531, 614
TauI	GCSGC	2 cut(s)	161, 188
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	2 cut(s)	210, 410
TseI	GCWGC	5 cut(s)	30, 188, 191, 289, 292
TspRI	CASTG	2 cut(s)	210, 410
VpaK11BI	GGWCC	1 cut(s)	463
XceI	RCATGY	1 cut(s)	334
XspI	CTAG	2 cut(s)	279, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.