Rorug04G0113600

Acetyltransferase (GNAT) domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
17862804 .. 17863091
288 bp
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UTR
Exon/CDS
Intron
Rorug04G0113600.1

Sequence Viewer

Length: 189 bp
ATGTTGCTGTTGGCCAACTATGACGGCATTTCTACTCTCAAGGCGGCTCTGCTGCACCTACTTGAGGGGGCGGTGCAGCGAAAGGACCCGGTTCAGAGGATCCGGGTGATTCAAGATGTTCGTCGGAGGATTTGGGCAAGACAGGTGTTCGAGTTTTCACCAGCTGTCTCGGTGACGGTTGAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

7.1

Weight (kDa)

10.23

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 71
AclWI GGATC 2 cut(s) 94, 107
AcoI YGGCCR 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 2 cut(s) 164, 184
AluI AGCT 2 cut(s) 164, 184
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 2 cut(s) 94, 107
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 52, 76
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 2 cut(s) 89, 104
AsuHPI GGTGA 3 cut(s) 118, 150, 184
AvaII GGWCC 1 cut(s) 85
BalI TGGCCA 1 cut(s) 14
BamHI GGATCC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 39, 88
BceAI ACGGC 1 cut(s) 40
BcnI CCSGG 2 cut(s) 89, 104
BcoDI GTCTC 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 185
BisI GCNGC 3 cut(s) 45, 53, 77
BlsI GCNGC 3 cut(s) 46, 54, 78
Bme1390I CCNGG 2 cut(s) 89, 104
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 87, 101
BmrFI CCNGG 2 cut(s) 89, 104
BpuEI CTTGAG 2 cut(s) 23, 83
BpuMI CCSGG 2 cut(s) 89, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 39, 88
BsgI GTGCAG 2 cut(s) 38, 95
BshFI GGCC 1 cut(s) 14
BsiSI CCGG 2 cut(s) 89, 103
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 2 cut(s) 44, 71
BspANI GGCC 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 87, 101
BspPI GGATC 2 cut(s) 94, 107
BssMI GATC 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 178
BstENI CCTNNNNNAGG 1 cut(s) 62
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 99
BstSCI CCNGG 2 cut(s) 87, 102
BstSFI CTRYAG 1 cut(s) 185
BstV1I GCAGC 2 cut(s) 39, 88
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BsuRI GGCC 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 85
CviJI RGCY 4 cut(s) 14, 47, 164, 184
CviKI_1 RGCY 4 cut(s) 14, 47, 164, 184
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 85
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 85
FaiI YATR 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 45, 53, 77
Fsp4HI GCNGC 3 cut(s) 45, 53, 77
GluI GCNGC 3 cut(s) 45, 53, 77
HaeIII GGCC 1 cut(s) 14
HapII CCGG 2 cut(s) 89, 103
HinfI GANTC 1 cut(s) 109
HpaII CCGG 2 cut(s) 89, 103
HphI GGTGA 3 cut(s) 118, 150, 184
Hpy188I TCNGA 2 cut(s) 96, 126
Hpy188III TCNNGA 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 55, 76
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 4 cut(s) 102, 116, 128, 174
Lsp1109I GCAGC 2 cut(s) 39, 88
MaeIII GTNAC 1 cut(s) 172
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MflI RGATCY 1 cut(s) 99
MlsI TGGCCA 1 cut(s) 14
MluNI TGGCCA 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 3 cut(s) 58, 90, 120
Mox20I TGGCCA 1 cut(s) 14
MscI TGGCCA 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 2 cut(s) 89, 103
MspR9I CCNGG 2 cut(s) 89, 104
NciI CCSGG 2 cut(s) 89, 104
NdeII GATC 1 cut(s) 99
NlaIV GGNNCC 2 cut(s) 87, 101
NmuCI GTSAC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 3 cut(s) 46, 54, 78
PpuMI RGGWCCY 1 cut(s) 85
Psp5II RGGWCCY 1 cut(s) 85
PspN4I GGNNCC 2 cut(s) 87, 101
PspPI GGNCC 1 cut(s) 85
PspPPI RGGWCCY 1 cut(s) 85
PsuI RGATCY 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 164
SatI GCNGC 3 cut(s) 45, 53, 77
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 85
ScrFI CCNGG 2 cut(s) 89, 104
SetI ASST 4 cut(s) 60, 147, 166, 186
SfcI CTRYAG 1 cut(s) 185
SinI GGWCC 1 cut(s) 85
SmlI CTYRAG 2 cut(s) 38, 62
SmoI CTYRAG 2 cut(s) 38, 62
SsiI CCGC 2 cut(s) 44, 71
StyD4I CCNGG 2 cut(s) 87, 102
TaaI ACNGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 150
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 109
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 2 cut(s) 52, 76
Tsp45I GTSAC 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 85
XagI CCTNNNNNAGG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.