Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001211

Physical Location & Seq

Genomic Coordinates Reverse (-)

2091765 .. 2092277

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAGATCGACTTGTCAAGCATCACTCTCCGTCCATTCCGGCTATCGGATGTCGAAGATCTCATGACATATGCCGGAGACGAGCAAGTCACTCGAAACCTCCGATGGAAGACTTTGACAACCAAAGAGGAGGCTTTCACTTTCCTCAAAGATGTTTGTATCCCTCACCCTTGGCGCCGGTCAATATGCATCGATGATCGTTCAATCGGCTTCATATCCGTCTTCCCATGGTCAGGTGATGAAGGTCACAAGGCTGACATGGGGTATGGTATAGCCCCAAAGTACTGGGGACAAGGAATAGCCACTGAAGTAGTGAAGACTGCGGTTCCTCAAGTGTTCAGGGACTTGCCTCATTTGCTTAGGATACAAGCTTTTGCATATTCAGATAACAAGGCCTCTCAGAGGGTGTTGGAGAAAGCTGGGTTCCAAAGGGAGGGTTTGTTGAGGAAATATGAATATATCAAGGGAGAGATTATTGATATGGTTGTTTATAGTTTTCTATCAACAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

171

Amino Acids

19.57

Weight (kDa)

5.95

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	8 - 143	3.5e-26	Acetyltransferase (GNAT) domain
Acetyltransf_4	PF13420	13 - 163	5.6e-07	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	59 - 142	6.3e-11	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22560
fragaria_vesca	FvH4_4g26610 FvH4_6g03890
malus_domestica	MD04G1217600.v1.1 MD13G1195500.v1.1 MD16G1196300.v1.1
prunus_persica	Prupe.1G016400_v2.0.a1 Prupe.1G016500_v2.0.a1 Prupe.6G337400_v2.0.a1
pyrus_communis	pycom04g19350 pycom13g16770 pycom13g16780
rosa_chinensis	RchiOBHm_Chr3g0452461 RchiOBHm_Chr4g0415671 RchiOBHm_Chr4g0415681 RchiOBHm_Chr4g0415701 RchiOBHm_Chr4g0415711 RchiOBHm_Chr6g0273471
rosa_laevigata	RLG00000008048 RLG00000008049 RLG00000013614 RLG00000025600
rosa_multiflora	Rmu_sc0004536.1_g000003 Rmu_sc0004536.1_g000004 Rmu_sc0011680.1_g000006 Rmu_sc0026940.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355380 Rroxscaffold_6G00429470 Rroxscaffold_7G00195300
rosa_rugosa	Rorug02G0641100 Rorug04G0113600 Rorug04G0113700 Rorug04G0136300 Rorug04G0136400 Rorug06G0075600
rosa_samantha	Rh3AG042800 Rh3BG044500 Rh3CG043100 Rh3DG043900 Rh4AG197200 Rh4AG197300 Rh4BG195700 Rh4BG195800 Rh4CG208000 Rh4CG208100 Rh4CG208300 Rh4DG195000 Rh4DG195100 Rh6AG190300 Rh6BG193800 Rh6CG193300 Rh6DG184900
rosa_wichuraiana	Rw3G003310 Rw4G016770 Rw4G016780 Rw6G016650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	174
AciI	CCGC	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	4 cut(s)	46, 233, 402, 433
AgsI	TTSAA	1 cut(s)	204
AluBI	AGCT	2 cut(s)	371, 419
AluI	AGCT	2 cut(s)	371, 419
Alw26I	GTCTC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	158, 248
BanI	GGYRCC	1 cut(s)	174
BbsI	GAAGAC	3 cut(s)	116, 214, 323
BccI	CCATC	1 cut(s)	99
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciVI	GTATCC	2 cut(s)	170, 357
BcoDI	GTCTC	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	178
BfuI	GTATCC	2 cut(s)	170, 357
BglII	AGATCT	1 cut(s)	58
BmcAI	AGTACT	1 cut(s)	284
BmiI	GGNNCC	3 cut(s)	176, 327, 425
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	2 cut(s)	30, 198
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	3 cut(s)	116, 214, 323
Bpu10I	CCTNAGC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	315
Bsa29I	ATCGAT	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	170, 227
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 233, 402, 433
Bse118I	RCCGGY	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	290
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	170, 227
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	4 cut(s)	46, 233, 402, 433
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	143
BseYI	CCCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	395
BshNI	GGYRCC	1 cut(s)	174
BshVI	ATCGAT	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	40, 75, 178
BslFI	GGGAC	2 cut(s)	303, 356
BslI	CCNNNNNNNGG	4 cut(s)	46, 233, 402, 433
BsmAI	GTCTC	1 cut(s)	72
BsmBI	CGTCTC	1 cut(s)	72
BsmFI	GGGAC	2 cut(s)	303, 356
BsnI	GGCC	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	6, 58, 196
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	3 cut(s)	176, 327, 425
BspT107I	GGYRCC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	170, 227
BssMI	GATC	3 cut(s)	6, 58, 196
BssNI	GRCGYC	1 cut(s)	175
BssT1I	CCWWGG	2 cut(s)	170, 227
BstACI	GRCGYC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	359, 399
BstDSI	CCRYGG	1 cut(s)	227
BstENI	CCTNNNNNAGG	1 cut(s)	400
BstF5I	GGATG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	9, 61, 199
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	3 cut(s)	6, 58, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstV2I	GAAGAC	3 cut(s)	116, 214, 323
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	2 cut(s)	170, 357
BsuRI	GGCC	1 cut(s)	395
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	303
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	3 cut(s)	64, 228, 259
CviJI	RGCY	9 cut(s)	43, 134, 210, 254, 275, 302, 371, 395, 419
CviKI_1	RGCY	9 cut(s)	43, 134, 210, 254, 275, 302, 371, 395, 419
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	2 cut(s)	359, 399
DinI	GGCGCC	1 cut(s)	176
DpnI	GATC	3 cut(s)	8, 60, 198
DpnII	GATC	3 cut(s)	6, 58, 196
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eco130I	CCWWGG	2 cut(s)	170, 227
Eco147I	AGGCCT	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	327
EcoNI	CCTNNNNNAGG	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	170, 227
EcoT22I	ATGCAT	1 cut(s)	191
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
ErhI	CCWWGG	2 cut(s)	170, 227
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	3 cut(s)	67, 231, 262
FaqI	GGGAC	2 cut(s)	303, 356
FatI	CATG	3 cut(s)	63, 227, 258
FauNDI	CATATG	1 cut(s)	70
FokI	GGATG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	176
GsaI	CCCAGC	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	3 cut(s)	40, 75, 178
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	67, 231, 262
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	369
HpaII	CCGG	3 cut(s)	40, 75, 178
HphI	GGTGA	2 cut(s)	158, 248
Hpy188I	TCNGA	4 cut(s)	49, 104, 385, 402
Hpy188III	TCNNGA	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	236
HpyCH4V	TGCA	2 cut(s)	189, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	2 cut(s)	359, 399
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	67, 231, 262
HspAI	GCGC	1 cut(s)	175
KasI	GGCGCC	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	6, 58, 196
LpnPI	CCDG	7 cut(s)	53, 88, 191, 219, 271, 325, 405
LweI	GCATC	2 cut(s)	30, 198
MaeIII	GTNAC	2 cut(s)	88, 245
MalI	GATC	3 cut(s)	8, 60, 198
MboI	GATC	3 cut(s)	6, 58, 196
MboII	GAAGA	4 cut(s)	68, 121, 214, 328
MflI	RGATCY	1 cut(s)	58
Mly113I	GGCGCC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	390
Mph1103I	ATGCAT	1 cut(s)	191
MspI	CCGG	3 cut(s)	40, 75, 178
MwoI	GCNNNNNNNGC	1 cut(s)	355
NarI	GGCGCC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	227
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	3 cut(s)	6, 58, 196
NlaIII	CATG	3 cut(s)	67, 231, 262
NlaIV	GGNNCC	3 cut(s)	176, 327, 425
NmuCI	GTSAC	2 cut(s)	88, 245
NsiI	ATGCAT	1 cut(s)	191
PagI	TCATGA	1 cut(s)	63
PceI	AGGCCT	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PluTI	GGCGCC	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	419
PspN4I	GGNNCC	3 cut(s)	176, 327, 425
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
Sau3AI	GATC	3 cut(s)	6, 58, 196
ScaI	AGTACT	1 cut(s)	284
SetI	ASST	5 cut(s)	102, 238, 247, 373, 421
SfaNI	GCATC	2 cut(s)	30, 198
SfoI	GGCGCC	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	1 cut(s)	323
SspDI	GGCGCC	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	395
StyI	CCWWGG	2 cut(s)	170, 227
TaqI	TCGA	4 cut(s)	9, 54, 94, 192
TatI	WGTACW	1 cut(s)	282
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	88, 245
Tsp45I	GTSAC	2 cut(s)	88, 245
TspDTI	ATGAA	3 cut(s)	202, 255, 468
TspGWI	ACGGA	2 cut(s)	20, 208
TspRI	CASTG	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	400
ZrmI	AGTACT	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.