Rorug06G0075600

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001211
Physical Location & Seq
Forward (+)
10044912 .. 10046305
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0075600.1

Sequence Viewer

Length: 804 bp
ATGTCAGAGCAGAGATCCAGGTTAAGAATCCGAGACGCCAGCCCGGACTCGGTTATTTACACACTCGAGTCCAGCCTCTTCTCCTCTTCCGCTTCCGCCAGCGTTGACCGCTGCTCCTTCGCCTCCGAAGCCTTTGACCACGACTCCACCGCCTCCGAGATCTCTCCGAACTCGTCGGCGCACCGTCACCAGGTTAAAGAGAGCTCCAGTGGTCCGGATCGCGATCCAGATCCGAAGACGAAGCCCGCTTTACACATCACTAGCCACCACCACGGTCATCGATCCAGAAAAGGAGAAAAGGCCAAAGTTCCAAAGCAAGACAGCGATGCCGACTTGGTTCTTGATTCAGCACGAAGCTCTTTCTCTCTCGCCTTGAAAGAATGCCAGGACCGTCGATCTAGATCTGAAGCTCTGTCCAAGAAGCTAGACAGACCGAGACCCGCTTCTTTGGATTTGAACAATGTCACCGCCTCGTCTCCGAGATTGGGGACCTTAAAGAAGAGCTCAACGACGTCTCGCAAGTCTGGAACCTTCCCAAGTCCCGGAACACCTACCTACCGGCATACTAGTCTTGGAGTGCAGAAGGGTTGGAGCTCGGAGCGAGTTCCGGCCAATGCTAATTTGGGGGGCAGGAAGAATACAACTGTTGCTGCTATGTTGCCATTCAATAATGGGAGGACGTTGCTGTCGAAATGGGAAGATGCAGAGAGGTGGATTTTCAGTCCGGTTCAGGGGGATTGTGTGACGAGGCAGTCGAACAGCAATTATATCGAATTGCGCTGCGCTCCGGTGCTTGCCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

267

Amino Acids

29.24

Weight (kDa)

9.77

Isoelectric Point (pI)

65.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 685, 751
AatII GACGTC 1 cut(s) 515
AccII CGCG 1 cut(s) 222
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 7 cut(s) 90, 96, 109, 150, 246, 441, 468
AclWI GGATC 5 cut(s) 9, 218, 224, 225, 276
AcoI YGGCCR 1 cut(s) 609
AcuI CTGAAG 1 cut(s) 426
AcyI GRCGYC 2 cut(s) 36, 512
AfiI CCNNNNNNNGG 5 cut(s) 49, 190, 485, 542, 731
AgsI TTSAA 3 cut(s) 376, 457, 667
AhlI ACTAGT 1 cut(s) 566
AjnI CCWGG 3 cut(s) 17, 189, 384
AluBI AGCT 6 cut(s) 204, 357, 410, 424, 504, 594
AluI AGCT 6 cut(s) 204, 357, 410, 424, 504, 594
Alw21I GWGCWC 3 cut(s) 206, 506, 596
Alw26I GTCTC 4 cut(s) 27, 430, 480, 519
AlwI GGATC 5 cut(s) 9, 218, 224, 225, 276
Ama87I CYCGRG 1 cut(s) 65
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 2 cut(s) 300, 609
ApeKI GCWGC 3 cut(s) 111, 650, 780
AspLEI GCGC 3 cut(s) 181, 780, 785
AspS9I GGNCC 3 cut(s) 212, 388, 489
AsuC2I CCSGG 2 cut(s) 44, 543
AsuHPI GGTGA 2 cut(s) 179, 457
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 3 cut(s) 212, 388, 489
BanII GRGCYC 3 cut(s) 206, 506, 596
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 3 cut(s) 206, 506, 596
BbvI GCAGC 3 cut(s) 98, 637, 767
BcgI CGANNNNNNTGC 2 cut(s) 751, 785
BciT130I CCWGG 3 cut(s) 19, 191, 386
BcnI CCSGG 2 cut(s) 44, 543
BcoDI GTCTC 4 cut(s) 27, 430, 480, 519
BcuI ACTAGT 1 cut(s) 566
BfaI CTAG 4 cut(s) 261, 399, 425, 567
BglII AGATCT 2 cut(s) 159, 401
BisI GCNGC 3 cut(s) 112, 651, 781
BlsI GCNGC 3 cut(s) 113, 652, 782
Bme1390I CCNGG 5 cut(s) 19, 44, 191, 386, 543
Bme18I GGWCC 3 cut(s) 212, 388, 489
BmeT110I CYCGRG 1 cut(s) 65
BmgT120I GGNCC 3 cut(s) 212, 388, 489
BmiI GGNNCC 2 cut(s) 490, 529
BmrFI CCNGG 5 cut(s) 19, 44, 191, 386, 543
BmsI GCATC 2 cut(s) 316, 691
BpiI GAAGAC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 190
BpuMI CCSGG 2 cut(s) 44, 543
Bsa29I ATCGAT 1 cut(s) 280
BsaBI GATNNNNATC 3 cut(s) 222, 228, 400
BsaHI GRCGYC 2 cut(s) 36, 512
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 271
BsaWI WCCGGW 3 cut(s) 214, 724, 787
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 128, 158
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 190, 485, 542, 731
Bse118I RCCGGY 1 cut(s) 558
Bse1I ACTGG 1 cut(s) 207
Bse8I GATNNNNATC 3 cut(s) 222, 228, 400
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 3 cut(s) 19, 191, 386
BseCI ATCGAT 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 271
BseJI GATNNNNATC 3 cut(s) 222, 228, 400
BseLI CCNNNNNNNGG 5 cut(s) 49, 190, 485, 542, 731
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 73
BseXI GCAGC 3 cut(s) 98, 637, 767
BsgI GTGCAG 1 cut(s) 599
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 2 cut(s) 302, 611
BshVI ATCGAT 1 cut(s) 280
BsiHKAI GWGCWC 3 cut(s) 206, 506, 596
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 7 cut(s) 44, 215, 543, 559, 608, 725, 788
BslFI GGGAC 2 cut(s) 502, 525
BslI CCNNNNNNNGG 5 cut(s) 49, 190, 485, 542, 731
BsmAI GTCTC 4 cut(s) 27, 430, 480, 519
BsmBI CGTCTC 3 cut(s) 27, 480, 519
BsmFI GGGAC 2 cut(s) 502, 525
BsmI GAATGC 1 cut(s) 386
BsnI GGCC 2 cut(s) 302, 611
Bso31I GGTCTC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 3 cut(s) 206, 506, 596
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 8 cut(s) 14, 159, 217, 223, 229, 281, 395, 401
Bsp68I TCGCGA 1 cut(s) 222
BspACI CCGC 7 cut(s) 90, 96, 109, 150, 246, 441, 468
BspANI GGCC 2 cut(s) 302, 611
BspDI ATCGAT 1 cut(s) 280
BspEI TCCGGA 1 cut(s) 214
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 490, 529
BspPI GGATC 5 cut(s) 9, 218, 224, 225, 276
BspQI GCTCTTC 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 558
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 558
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 8 cut(s) 14, 159, 217, 223, 229, 281, 395, 401
BssNI GRCGYC 2 cut(s) 36, 512
Bst2UI CCWGG 3 cut(s) 19, 191, 386
Bst4CI ACNGT 4 cut(s) 185, 275, 392, 646
Bst6I CTCTTC 3 cut(s) 83, 91, 494
BstACI GRCGYC 2 cut(s) 36, 512
BstC8I GCNNGC 4 cut(s) 40, 100, 246, 795
BstDSI CCRYGG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 3 cut(s) 181, 780, 785
BstKTI GATC 8 cut(s) 17, 162, 220, 226, 232, 284, 398, 404
BstMAI GTCTC 4 cut(s) 27, 430, 480, 519
BstMBI GATC 8 cut(s) 14, 159, 217, 223, 229, 281, 395, 401
BstMWI GCNNNNNNNGC 2 cut(s) 108, 128
BstNI CCWGG 3 cut(s) 19, 191, 386
BstSCI CCNGG 5 cut(s) 17, 42, 189, 384, 541
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 3 cut(s) 98, 637, 767
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 4 cut(s) 14, 159, 229, 401
BstYI RGATCY 4 cut(s) 14, 159, 229, 401
Bsu15I ATCGAT 1 cut(s) 280
BsuRI GGCC 2 cut(s) 302, 611
BsuTUI ATCGAT 1 cut(s) 280
BtgI CCRYGG 1 cut(s) 271
BtgZI GCGATG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 214
BtuMI TCGCGA 1 cut(s) 222
Cac8I GCNNGC 4 cut(s) 40, 100, 246, 795
CfoI GCGC 3 cut(s) 181, 780, 785
Cfr10I RCCGGY 1 cut(s) 558
Cfr13I GGNCC 3 cut(s) 212, 388, 489
ClaI ATCGAT 1 cut(s) 280
CseI GACGC 1 cut(s) 44
CsiI ACCWGGT 1 cut(s) 189
DpnI GATC 8 cut(s) 16, 161, 219, 225, 231, 283, 397, 403
DpnII GATC 8 cut(s) 14, 159, 217, 223, 229, 281, 395, 401
DrdI GACNNNNNNGTC 2 cut(s) 685, 751
DseDI GACNNNNNNGTC 2 cut(s) 685, 751
EaeI YGGCCR 1 cut(s) 609
Eam1104I CTCTTC 3 cut(s) 83, 91, 494
EarI CTCTTC 3 cut(s) 83, 91, 494
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 3 cut(s) 204, 504, 594
Eco24I GRGCYC 3 cut(s) 206, 506, 596
Eco31I GGTCTC 1 cut(s) 430
Eco47I GGWCC 3 cut(s) 212, 388, 489
Eco53kI GAGCTC 3 cut(s) 204, 504, 594
Eco57I CTGAAG 1 cut(s) 426
Eco88I CYCGRG 1 cut(s) 65
EcoICRI GAGCTC 3 cut(s) 204, 504, 594
EcoO109I RGGNCCY 1 cut(s) 489
EcoRII CCWGG 3 cut(s) 17, 189, 384
EcoT38I GRGCYC 3 cut(s) 206, 506, 596
Esp3I CGTCTC 3 cut(s) 27, 480, 519
FaiI YATR 3 cut(s) 564, 656, 768
FaqI GGGAC 2 cut(s) 502, 525
FauI CCCGC 2 cut(s) 253, 448
Fnu4HI GCNGC 3 cut(s) 112, 651, 781
FriOI GRGCYC 3 cut(s) 206, 506, 596
Fsp4HI GCNGC 3 cut(s) 112, 651, 781
FspBI CTAG 4 cut(s) 261, 399, 425, 567
GlaI GCGC 3 cut(s) 180, 779, 784
GluI GCNGC 3 cut(s) 112, 651, 781
GsuI CTGGAG 1 cut(s) 190
HaeIII GGCC 2 cut(s) 302, 611
HapII CCGG 7 cut(s) 44, 215, 543, 559, 608, 725, 788
HgaI GACGC 1 cut(s) 44
HhaI GCGC 3 cut(s) 181, 780, 785
Hin1I GRCGYC 2 cut(s) 36, 512
Hin6I GCGC 3 cut(s) 179, 778, 783
HinP1I GCGC 3 cut(s) 179, 778, 783
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 5 cut(s) 27, 47, 68, 143, 344
HpaII CCGG 7 cut(s) 44, 215, 543, 559, 608, 725, 788
HphI GGTGA 2 cut(s) 179, 457
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 9 cut(s) 7, 32, 127, 157, 168, 234, 406, 480, 598
Hpy188III TCNNGA 7 cut(s) 215, 221, 227, 285, 341, 399, 525
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 3 cut(s) 178, 396, 514
HpyAV CCTTC 3 cut(s) 127, 541, 577
HpyCH4III ACNGT 4 cut(s) 185, 275, 392, 646
HpyCH4IV ACGT 2 cut(s) 512, 680
HpyCH4V TGCA 2 cut(s) 580, 704
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 128
HpySE526I ACGT 2 cut(s) 512, 680
Hsp92I GRCGYC 2 cut(s) 36, 512
HspAI GCGC 3 cut(s) 179, 778, 783
Kpn2I TCCGGA 1 cut(s) 214
Kzo9I GATC 8 cut(s) 14, 159, 217, 223, 229, 281, 395, 401
LguI GCTCTTC 1 cut(s) 494
LmnI GCTCC 5 cut(s) 119, 209, 591, 598, 790
Lsp1109I GCAGC 3 cut(s) 98, 637, 767
LweI GCATC 2 cut(s) 316, 691
MabI ACCWGGT 1 cut(s) 189
MaeI CTAG 4 cut(s) 261, 399, 425, 567
MaeII ACGT 2 cut(s) 512, 680
MaeIII GTNAC 3 cut(s) 185, 463, 742
MalI GATC 8 cut(s) 16, 161, 219, 225, 231, 283, 397, 403
MboI GATC 8 cut(s) 14, 159, 217, 223, 229, 281, 395, 401
MboII GAAGA 6 cut(s) 70, 78, 247, 511, 646, 710
MflI RGATCY 4 cut(s) 14, 159, 229, 401
MhlI GDGCHC 3 cut(s) 206, 506, 596
MluCI AATT 3 cut(s) 619, 763, 773
MlyI GAGTC 3 cut(s) 41, 77, 137
MmeI TCCRAC 1 cut(s) 569
MnlI CCTC 8 cut(s) 86, 94, 133, 163, 481, 669, 702, 741
MroI TCCGGA 1 cut(s) 214
MseI TTAA 3 cut(s) 23, 195, 494
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 7 cut(s) 44, 215, 543, 559, 608, 725, 788
MspR9I CCNGG 5 cut(s) 19, 44, 191, 386, 543
MteI GCGCNGCGC 1 cut(s) 781
Mva1269I GAATGC 1 cut(s) 386
MvaI CCWGG 3 cut(s) 19, 191, 386
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 108, 128
NciI CCSGG 2 cut(s) 44, 543
NdeII GATC 8 cut(s) 14, 159, 217, 223, 229, 281, 395, 401
NlaIV GGNNCC 2 cut(s) 490, 529
NmuCI GTSAC 3 cut(s) 185, 463, 742
NruI TCGCGA 1 cut(s) 222
PaeR7I CTCGAG 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 494
PcsI WCGNNNNNNNCGW 2 cut(s) 686, 752
PctI GAATGC 1 cut(s) 386
PfeI GAWTC 2 cut(s) 27, 344
PfoI TCCNGGA 1 cut(s) 541
PkrI GCNGC 3 cut(s) 113, 652, 782
PleI GAGTC 3 cut(s) 41, 76, 137
PpsI GAGTC 3 cut(s) 41, 76, 137
PpuMI RGGWCCY 1 cut(s) 489
Psp124BI GAGCTC 3 cut(s) 206, 506, 596
Psp5II RGGWCCY 1 cut(s) 489
Psp6I CCWGG 3 cut(s) 17, 189, 384
PspGI CCWGG 3 cut(s) 17, 189, 384
PspN4I GGNNCC 2 cut(s) 490, 529
PspPI GGNCC 3 cut(s) 212, 388, 489
PspPPI RGGWCCY 1 cut(s) 489
PspXI VCTCGAGB 1 cut(s) 65
PsuI RGATCY 4 cut(s) 14, 159, 229, 401
RruI TCGCGA 1 cut(s) 222
SacI GAGCTC 3 cut(s) 206, 506, 596
SapI GCTCTTC 1 cut(s) 494
SaqAI TTAA 3 cut(s) 23, 195, 494
SatI GCNGC 3 cut(s) 112, 651, 781
Sau3AI GATC 8 cut(s) 14, 159, 217, 223, 229, 281, 395, 401
Sau96I GGNCC 3 cut(s) 212, 388, 489
SchI GAGTC 3 cut(s) 41, 77, 137
ScrFI CCNGG 5 cut(s) 19, 44, 191, 386, 543
SduI GDGCHC 3 cut(s) 206, 506, 596
SexAI ACCWGGT 1 cut(s) 189
SfaNI GCATC 2 cut(s) 316, 691
Sfr274I CTCGAG 1 cut(s) 65
SinI GGWCC 3 cut(s) 212, 388, 489
SlaI CTCGAG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 566
Sse9I AATT 3 cut(s) 619, 763, 773
SsiI CCGC 7 cut(s) 90, 96, 109, 150, 246, 441, 468
SspMI CTAG 4 cut(s) 261, 399, 425, 567
SstI GAGCTC 3 cut(s) 206, 506, 596
StyD4I CCNGG 5 cut(s) 17, 42, 189, 384, 541
TaaI ACNGT 4 cut(s) 185, 275, 392, 646
TaiI ACGT 2 cut(s) 515, 683
TaqI TCGA 6 cut(s) 66, 280, 394, 689, 755, 771
TaqII GACCGA 1 cut(s) 448
TasI AATT 3 cut(s) 619, 763, 773
TfiI GAWTC 2 cut(s) 27, 344
Tru1I TTAA 3 cut(s) 23, 195, 494
Tru9I TTAA 3 cut(s) 23, 195, 494
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 3 cut(s) 185, 463, 742
TseI GCWGC 3 cut(s) 111, 650, 780
Tsp45I GTSAC 3 cut(s) 185, 463, 742
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 3 cut(s) 212, 388, 489
XbaI TCTAGA 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 619
XhoI CTCGAG 1 cut(s) 65
XspI CTAG 4 cut(s) 261, 399, 425, 567
ZraI GACGTC 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.