Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001211

Physical Location & Seq

Genomic Coordinates Reverse (-)

34040656 .. 34041184

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGATAACACCGATAACAATTCATTGGCGATCACACTCCGTCCTTACGGACTCTCGGATGCCGAGGATTTCTTGATGTATGCTGGTGATGAAAGGCCACACGGAGATAATGACAAGTGCAGAGCAGAGATTGGGTACGCGTTAGCTGCCGAGTATTGGGGACAAGGCATAGCAACCAGAGCTGTGAAGATGGCCATCATTGATGTGTTCAAAGAATTCACAGTTTTGGTTAGACTTCAAGCTATGGTTTTGGTAGAGAACAAGGGTTCCCGGCGAGTGTTGGAAAAACTTGGGTTTCACAAAGAAGGTCTGTTGAGGAAGTATACGATTCATAAAGGCACAGCTAGTGATATTTTCATGTATAGTCTTCTGTCCACTGATCCCATGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

130

Amino Acids

14.62

Weight (kDa)

5.89

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	36 - 100	1.3e-14	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	37 - 99	3.3e-08	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22560
fragaria_vesca	FvH4_4g26610 FvH4_6g03890
malus_domestica	MD04G1217600.v1.1 MD13G1195500.v1.1 MD16G1196300.v1.1
prunus_persica	Prupe.1G016400_v2.0.a1 Prupe.1G016500_v2.0.a1 Prupe.6G337400_v2.0.a1
pyrus_communis	pycom04g19350 pycom13g16770 pycom13g16780
rosa_chinensis	RchiOBHm_Chr3g0452461 RchiOBHm_Chr4g0415671 RchiOBHm_Chr4g0415681 RchiOBHm_Chr4g0415701 RchiOBHm_Chr4g0415711 RchiOBHm_Chr6g0273471
rosa_laevigata	RLG00000008048 RLG00000008049 RLG00000013614 RLG00000025600
rosa_multiflora	Rmu_sc0004536.1_g000003 Rmu_sc0004536.1_g000004 Rmu_sc0011680.1_g000006 Rmu_sc0026940.1_g000001
rosa_roxburghii	Rroxscaffold_5G00355380 Rroxscaffold_6G00429470 Rroxscaffold_7G00195300
rosa_rugosa	Rorug02G0641100 Rorug04G0113600 Rorug04G0113700 Rorug04G0136300 Rorug04G0136400 Rorug06G0075600
rosa_samantha	Rh3AG042800 Rh3BG044500 Rh3CG043100 Rh3DG043900 Rh4AG197200 Rh4AG197300 Rh4BG195700 Rh4BG195800 Rh4CG208000 Rh4CG208100 Rh4CG208300 Rh4DG195000 Rh4DG195100 Rh6AG190300 Rh6BG193800 Rh6CG193300 Rh6DG184900
rosa_wichuraiana	Rw3G003310 Rw4G016770 Rw4G016780 Rw6G016650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	323
AccII	CGCG	1 cut(s)	140
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	215
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	156
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	211, 239
AloI	GAACNNNNNNTCC	2 cut(s)	251, 283
AluBI	AGCT	4 cut(s)	146, 182, 242, 344
AluI	AGCT	4 cut(s)	146, 182, 242, 344
AlwI	GGATC	1 cut(s)	374
AoxI	GGCC	2 cut(s)	95, 192
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	184, 203
BcnI	CCSGG	1 cut(s)	271
BfaI	CTAG	1 cut(s)	345
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	64
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	2 cut(s)	97, 194
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	97, 194
Bsp143I	GATC	2 cut(s)	30, 379
BspANI	GGCC	2 cut(s)	97, 194
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	30, 379
BssNAI	GTATAC	1 cut(s)	324
Bst1107I	GTATAC	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	64
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	2 cut(s)	33, 382
BstMBI	GATC	2 cut(s)	30, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 179
BstSCI	CCNGG	1 cut(s)	269
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	359
BstZ17I	GTATAC	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	97, 194
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	2 cut(s)	358, 385
CviJI	RGCY	6 cut(s)	97, 146, 182, 194, 242, 344
CviKI_1	RGCY	6 cut(s)	97, 146, 182, 194, 242, 344
CviQI	GTAC	1 cut(s)	136
DpnI	GATC	2 cut(s)	32, 381
DpnII	GATC	2 cut(s)	30, 379
EaeI	YGGCCR	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	215
FaeI	CATG	2 cut(s)	361, 388
FaiI	YATR	8 cut(s)	81, 170, 245, 324, 333, 359, 363, 386
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	2 cut(s)	357, 384
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	97, 194
HapII	CCGG	1 cut(s)	271
Hin1II	CATG	2 cut(s)	361, 388
HinfI	GANTC	2 cut(s)	51, 328
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	324, 375
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	2 cut(s)	324, 375
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 179
Hsp92II	CATG	2 cut(s)	361, 388
Kzo9I	GATC	2 cut(s)	30, 379
LpnPI	CCDG	3 cut(s)	69, 190, 284
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	345
MalI	GATC	2 cut(s)	32, 381
MboI	GATC	2 cut(s)	30, 379
MboII	GAAGA	2 cut(s)	199, 359
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	2 cut(s)	19, 215
MluI	ACGCGT	1 cut(s)	138
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	2 cut(s)	58, 309
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	271
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	146, 179
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	2 cut(s)	30, 379
NlaIII	CATG	2 cut(s)	361, 388
NlaIV	GGNNCC	1 cut(s)	268
NmeAIII	GCCGAG	2 cut(s)	88, 175
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	268
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	203
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	30, 379
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	5 cut(s)	148, 184, 244, 310, 346
SfaNI	GCATC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	2 cut(s)	19, 215
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	269
TaaI	ACNGT	1 cut(s)	223
TasI	AATT	2 cut(s)	19, 215
TfiI	GAWTC	1 cut(s)	328
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	4 cut(s)	12, 105, 320, 346
TspGWI	ACGGA	3 cut(s)	29, 63, 117
TspRI	CASTG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	323
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.