Rorug02G0641100

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000510
Physical Location & Seq
Forward (+)
75329890 .. 75333874
3985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0641100.1

Sequence Viewer

Length: 711 bp
ATGGGTGCATGTGCTTCGGCTCATAGGGAATCCGAGTCGGCCATGAAACTCGGAATGTCATTCGGGTCCAAACCGGGCAAGCTCTCCTCTATTCCACCGTCCCCTGTCAAAGAGAAACCGACGACAAACGGTGGCCGTCCGATCAACGATCAATGGTCGCCTGCTCGCCCCACAGCCACGGCTTTCCGAGACTACGCAGGTAGTAAAGATGAGGCCTTCTTTGATTCCAAGCCTTGGTTGGACTCAGATTGTGAAGATGACTTCTACAGTGTCAATGGCGACTTTACTCCATCTCGTGGCAACACTCCGGTCCATCAGAACTTCTCTCGTGTCAACAAAACTCCTTTTGAGAACAGAAGTCCTGTTTCTATTCCTGCTCCATCTCCAATACAAAAGAAAAAGAAACTTGCTGATCTCTTTCGCGAGAGCTTCAGAGATGGTGATGATGTTGATGATGCAACAGATCACTCAGGTGATCAAACCATGACTAATGGAAAGATGGAAGTGAAGCCCACCGCCCAAGACCTCCCTCCAAAATCTCTGAATGGTACTCCTAATGTTTCTGGTAGCGAAAGGACAGCCAATGAATATCTAACTGAAGACAGACCAATTAAATCTACACAATGCTGCCTTCCTACCTTTGTTTCTTTTCGCAGCTCTAGTCAGAGGGGGAAGATGAGCCCTACCGTTGCTGTAGTTGACAAAGCTTGA

Protein Analysis

236

Amino Acids

25.71

Weight (kDa)

6.83

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 188
AccB7I CCANNNNNTGG 2 cut(s) 234, 296
AccII CGCG 1 cut(s) 423
AciI CCGC 1 cut(s) 516
AcoI YGGCCR 2 cut(s) 39, 133
AcuI CTGAAG 2 cut(s) 415, 618
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 2 cut(s) 234, 296
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 4 cut(s) 82, 429, 657, 707
AluI AGCT 4 cut(s) 82, 429, 657, 707
Alw26I GTCTC 1 cut(s) 183
AoxI GGCC 3 cut(s) 39, 133, 213
ApeKI GCWGC 2 cut(s) 627, 654
AspS9I GGNCC 2 cut(s) 66, 310
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 2 cut(s) 452, 485
AvaII GGWCC 2 cut(s) 66, 310
BanII GRGCYC 1 cut(s) 683
BauI CACGAG 2 cut(s) 294, 327
BbsI GAAGAC 1 cut(s) 606
BbvI GCAGC 2 cut(s) 614, 666
BccI CCATC 5 cut(s) 298, 321, 388, 431, 493
BceAI ACGGC 2 cut(s) 120, 195
BcgI CGANNNNNNTGC 1 cut(s) 31
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 660
BfmI CTRYAG 2 cut(s) 265, 693
BfuAI ACCTGC 1 cut(s) 188
BisI GCNGC 2 cut(s) 628, 655
BlsI GCNGC 2 cut(s) 629, 656
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 2 cut(s) 66, 310
BmgT120I GGNCC 2 cut(s) 66, 310
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 606
BpuMI CCSGG 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 177, 233
BsaWI WCCGGW 1 cut(s) 307
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 296
BseDI CCNNGG 2 cut(s) 177, 233
BseLI CCNNNNNNNGG 2 cut(s) 234, 296
BseMII CTCAG 2 cut(s) 258, 483
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 2 cut(s) 614, 666
Bsh1236I CGCG 1 cut(s) 423
BshFI GGCC 3 cut(s) 41, 135, 215
BsiSI CCGG 2 cut(s) 74, 308
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 2 cut(s) 234, 296
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 3 cut(s) 41, 135, 215
Bsp1286I GDGCHC 1 cut(s) 683
Bsp143I GATC 5 cut(s) 141, 148, 412, 463, 475
Bsp68I TCGCGA 1 cut(s) 423
BspACI CCGC 1 cut(s) 516
BspANI GGCC 3 cut(s) 41, 135, 215
BspCNI CTCAG 2 cut(s) 257, 482
BspFNI CGCG 1 cut(s) 423
BspLI GGNNCC 1 cut(s) 67
BspMI ACCTGC 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 177, 233
BssMI GATC 5 cut(s) 141, 148, 412, 463, 475
BssSI CACGAG 2 cut(s) 294, 327
BssT1I CCWWGG 1 cut(s) 233
Bst2BI CACGAG 2 cut(s) 294, 327
Bst4CI ACNGT 4 cut(s) 99, 131, 269, 688
BstC8I GCNNGC 3 cut(s) 80, 162, 166
BstDEI CTNAG 2 cut(s) 244, 469
BstDSI CCRYGG 1 cut(s) 177
BstFNI CGCG 1 cut(s) 423
BstKTI GATC 5 cut(s) 144, 151, 415, 466, 478
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 5 cut(s) 141, 148, 412, 463, 475
BstNSI RCATGY 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 2 cut(s) 265, 693
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 2 cut(s) 614, 666
BstV2I GAAGAC 1 cut(s) 606
BsuRI GGCC 3 cut(s) 41, 135, 215
BtgI CCRYGG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 274
BtuMI TCGCGA 1 cut(s) 423
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 3 cut(s) 80, 162, 166
Cfr13I GGNCC 2 cut(s) 66, 310
Csp6I GTAC 1 cut(s) 549
CviAII CATG 3 cut(s) 9, 43, 484
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 2 cut(s) 244, 469
DpnI GATC 5 cut(s) 143, 150, 414, 465, 477
DpnII GATC 5 cut(s) 141, 148, 412, 463, 475
EaeI YGGCCR 2 cut(s) 39, 133
Eco130I CCWWGG 1 cut(s) 233
Eco147I AGGCCT 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 683
Eco47I GGWCC 2 cut(s) 66, 310
Eco57I CTGAAG 2 cut(s) 415, 618
EcoT14I CCWWGG 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 683
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 3 cut(s) 12, 46, 487
FaiI YATR 4 cut(s) 10, 24, 44, 485
FaqI GGGAC 1 cut(s) 85
FatI CATG 3 cut(s) 8, 42, 483
FbaI TGATCA 1 cut(s) 475
Fnu4HI GCNGC 2 cut(s) 628, 655
FriOI GRGCYC 1 cut(s) 683
Fsp4HI GCNGC 2 cut(s) 628, 655
FspBI CTAG 1 cut(s) 660
GluI GCNGC 2 cut(s) 628, 655
HaeIII GGCC 3 cut(s) 41, 135, 215
HapII CCGG 2 cut(s) 74, 308
Hin1II CATG 3 cut(s) 12, 46, 487
HincII GTYRAC 2 cut(s) 334, 700
HindII GTYRAC 2 cut(s) 334, 700
HindIII AAGCTT 1 cut(s) 705
HinfI GANTC 4 cut(s) 29, 35, 224, 242
HpaII CCGG 2 cut(s) 74, 308
HphI GGTGA 2 cut(s) 452, 485
Hpy166II GTNNAC 2 cut(s) 334, 700
Hpy188I TCNGA 9 cut(s) 34, 53, 141, 188, 247, 318, 434, 543, 666
Hpy188III TCNNGA 1 cut(s) 422
Hpy8I GTNNAC 2 cut(s) 334, 700
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 226, 641
HpyCH4III ACNGT 4 cut(s) 99, 131, 269, 688
HpyCH4V TGCA 2 cut(s) 8, 458
HpyF3I CTNAG 2 cut(s) 244, 469
Hsp92II CATG 3 cut(s) 12, 46, 487
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 5 cut(s) 141, 148, 412, 463, 475
LmnI GCTCC 1 cut(s) 382
LpnPI CCDG 9 cut(s) 87, 117, 174, 183, 321, 375, 387, 456, 549
Lsp1109I GCAGC 2 cut(s) 614, 666
LweI GCATC 1 cut(s) 445
MaeI CTAG 1 cut(s) 660
MalI GATC 5 cut(s) 143, 150, 414, 465, 477
MboI GATC 5 cut(s) 141, 148, 412, 463, 475
MboII GAAGA 3 cut(s) 266, 611, 685
MhlI GDGCHC 1 cut(s) 683
MluCI AATT 1 cut(s) 609
MlyI GAGTC 2 cut(s) 44, 236
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 5 cut(s) 97, 205, 536, 540, 660
MseI TTAA 1 cut(s) 612
MslI CAYNNNNRTG 1 cut(s) 471
MspI CCGG 2 cut(s) 74, 308
MspR9I CCNGG 1 cut(s) 75
MvnI CGCG 1 cut(s) 423
NciI CCSGG 1 cut(s) 75
NdeII GATC 5 cut(s) 141, 148, 412, 463, 475
NlaIII CATG 3 cut(s) 12, 46, 487
NlaIV GGNNCC 1 cut(s) 67
NruI TCGCGA 1 cut(s) 423
NspI RCATGY 1 cut(s) 12
OliI CACNNNNGTG 1 cut(s) 471
PceI AGGCCT 1 cut(s) 215
PfeI GAWTC 2 cut(s) 29, 224
PflMI CCANNNNNTGG 2 cut(s) 234, 296
PkrI GCNGC 2 cut(s) 629, 656
PleI GAGTC 2 cut(s) 43, 236
PpsI GAGTC 2 cut(s) 43, 236
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 2 cut(s) 66, 310
RruI TCGCGA 1 cut(s) 423
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 1 cut(s) 471
SaqAI TTAA 1 cut(s) 612
SatI GCNGC 2 cut(s) 628, 655
Sau3AI GATC 5 cut(s) 141, 148, 412, 463, 475
Sau96I GGNCC 2 cut(s) 66, 310
SchI GAGTC 2 cut(s) 44, 236
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 1 cut(s) 683
SetI ASST 8 cut(s) 84, 202, 431, 475, 528, 641, 659, 709
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 2 cut(s) 265, 693
SinI GGWCC 2 cut(s) 66, 310
SmiMI CAYNNNNRTG 1 cut(s) 471
Sse9I AATT 1 cut(s) 609
SseBI AGGCCT 1 cut(s) 215
SsiI CCGC 1 cut(s) 516
SspMI CTAG 1 cut(s) 660
StuI AGGCCT 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 4 cut(s) 99, 131, 269, 688
TasI AATT 1 cut(s) 609
TfiI GAWTC 2 cut(s) 29, 224
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TscAI CASTG 1 cut(s) 274
TseI GCWGC 2 cut(s) 627, 654
TspDTI ATGAA 2 cut(s) 59, 600
TspRI CASTG 1 cut(s) 274
Van91I CCANNNNNTGG 2 cut(s) 234, 296
VpaK11BI GGWCC 2 cut(s) 66, 310
XceI RCATGY 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XspI CTAG 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.