MD10G1286900.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000510
Physical Location & Seq
Reverse (-)
37637964 .. 37638203
240 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1286900.v1.1.491

Sequence Viewer

Length: 240 bp
ATGGGTCGTGATCTGAGAGTTGGAGTGGAGGTTGAGAAGGGAGAGGAAGATGGGGTTTTTACGAAGGAGGGTGTTTGCAAGGCTGTGAGAGATGTGATGGATGCGGAGAGCGAGGTGGGGAAGGAAGTGAGGAGAAACCATGCAAAGTTGAGGGAGTTTCTTTCCAGTAAAGGCCTTGAGAACTCCTACATTGACAGTTTTGTGGAGAAGCTGCATGCGCTGCTTGGCTTAAATAAGTAA

Protein Analysis

80

Amino Acids

8.85

Weight (kDa)

5.69

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 2 cut(s) 211, 220
AspLEI GCGC 1 cut(s) 220
BbvI GCAGC 2 cut(s) 198, 207
BccI CCATC 2 cut(s) 44, 91
BisI GCNGC 2 cut(s) 212, 221
BlsI GCNGC 2 cut(s) 213, 222
BmsI GCATC 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bse1I ACTGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 5
BseNI ACTGG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 2 cut(s) 198, 207
BshFI GGCC 1 cut(s) 174
BsnI GGCC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 6
BsrI ACTGG 1 cut(s) 165
BssMI GATC 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 197
BstAPI GCANNNNNTGC 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 106
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 217, 220
BstNSI RCATGY 1 cut(s) 218
BstV1I GCAGC 2 cut(s) 198, 207
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 220
CviAII CATG 2 cut(s) 140, 215
CviJI RGCY 4 cut(s) 83, 174, 211, 228
CviKI_1 RGCY 4 cut(s) 83, 174, 211, 228
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco147I AGGCCT 1 cut(s) 174
FaeI CATG 2 cut(s) 143, 218
FaiI YATR 2 cut(s) 141, 216
FatI CATG 2 cut(s) 139, 214
Fnu4HI GCNGC 2 cut(s) 212, 221
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 2 cut(s) 212, 221
GlaI GCGC 1 cut(s) 219
GluI GCNGC 2 cut(s) 212, 221
HaeIII GGCC 1 cut(s) 174
HhaI GCGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 143, 218
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 8
HpyAV CCTTC 3 cut(s) 31, 58, 115
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4V TGCA 3 cut(s) 78, 143, 214
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 220
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 2 cut(s) 143, 218
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 1 cut(s) 178
Lsp1109I GCAGC 2 cut(s) 198, 207
LweI GCATC 1 cut(s) 91
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 59
MnlI CCTC 6 cut(s) 22, 37, 61, 106, 123, 144
MseI TTAA 1 cut(s) 230
MwoI GCNNNNNNNGC 2 cut(s) 217, 220
NdeII GATC 1 cut(s) 10
NlaIII CATG 2 cut(s) 143, 218
NspI RCATGY 1 cut(s) 218
PaeI GCATGC 1 cut(s) 218
PceI AGGCCT 1 cut(s) 174
PkrI GCNGC 2 cut(s) 213, 222
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 2 cut(s) 212, 221
Sau3AI GATC 1 cut(s) 10
SetI ASST 3 cut(s) 33, 117, 213
SfaNI GCATC 1 cut(s) 91
SgeI CNNG 8 cut(s) 20, 91, 124, 152, 177, 188, 227, 236
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SphI GCATGC 1 cut(s) 218
SseBI AGGCCT 1 cut(s) 174
SsiI CCGC 1 cut(s) 104
StuI AGGCCT 1 cut(s) 174
TaaI ACNGT 1 cut(s) 197
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TseI GCWGC 2 cut(s) 211, 220
XceI RCATGY 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.