RLG00000031670

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000510
Physical Location & Seq
Forward (+)
7215353 .. 7215661
309 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031670

Sequence Viewer

Length: 309 bp
ATGGGGCATTTGACTGCATATCTTCACATCTCGAACAAACTCGCAGAGAGAGGCCACAACATCTCATTCTTTTTACCTCTCAAAACTCAATCCAAGTTGCAGCACTATAATCTCCACCCTCATCTCATTACCTTCATTCCCCTCGATGTCCCTCATGTCGATGGCCTCCCTCGGGGGACTGAAACCACAGCTGACATTCCTCTCTCTTTAGGCTCTCTTCTTGCCACCGCCATGGACCTCACCCGACCCCAAATCGAACAATATCTGCTCAAACTCGAGCCTGATTTTGTGTTCTTCGATTTTAGTTAA

Protein Analysis

103

Amino Acids

11.57

Weight (kDa)

6.11

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000510)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08341 FvH4_3g08360 FvH4_3g13460 FvH4_5g23070 FvH4_6g03920 FvH4_7g24190
malus_domestica MD05G1307700.v1.1 MD05G1307800.v1.1 MD05G1307900.v1.1 MD05G1308000.v1.1 MD10G1286900.v1.1 MD10G1287000.v1.1 MD10G1287100.v1.1
prunus_persica Prupe.4G054800_v2.0.a1
pyrus_communis pycom05g28450 pycom05g28470 pycom10g23980 pycom10g24010
rosa_chinensis RchiOBHm_Chr3g0452471 RchiOBHm_Chr5g0009541 RchiOBHm_Chr5g0009571 RchiOBHm_Chr5g0009591 RchiOBHm_Chr5g0009631 RchiOBHm_Chr5g0009641
rosa_laevigata RLG00000025599 RLG00000031670 RLG00000031671 RLG00000031673 RLG00000031674 RLG00000031676 RLG00000031677
rosa_multiflora Rmu_co8094034.1_g000001 Rmu_co8292439.1_g000001 Rmu_co8399121.1_g000001 Rmu_co8467919.1_g000001 Rmu_sc0002711.1_g000003 Rmu_sc0002711.1_g000007 Rmu_sc0006311.1_g000004 Rmu_sc0006311.1_g000008 Rmu_sc0011680.1_g000005 Rmu_sc0025450.1_g000001 Rmu_sc0025487.1_g000001 Rmu_sc0034739.1_g000001 Rmu_sc0034740.1_g000001 Rmu_sc0036612.1_g000001 Rmu_sc0036650.1_g000001
rosa_roxburghii Rroxscaffold_1G00066560 Rroxscaffold_1G00066570 Rroxscaffold_1G00066590 Rroxscaffold_1G00067280 Rroxscaffold_1G00067290 Rroxscaffold_6G00429480 Rroxscaffold_6G00429490
rosa_rugosa Rorug02G0641100 Rorug02G0641200 Rorug04G0444300 Rorug04G0444400 Rorug04G0444500
rosa_samantha Rh3AG042900 Rh3BG044600 Rh3CG043200 Rh3DG044000 Rh4DG097500 Rh4DG250600 Rh5AG075400 Rh5AG075700 Rh5AG076000 Rh5AG076100 Rh5BG070900 Rh5BG071000 Rh5BG071100 Rh5BG071200 Rh5CG083100 Rh5CG083600 Rh5CG083700 Rh5CG083800 Rh5DG070900 Rh5DG071400 Rh5DG071500 Rh5DG071600 Rh5DG071700 Rh5DG071800
rosa_wichuraiana Rw3G003320 Rw5G006950 Rw5G006980 Rw5G006990 Rw5G007000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Ama87I CYCGRG 2 cut(s) 171, 275
AoxI GGCC 2 cut(s) 52, 163
ApeKI GCWGC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 2 cut(s) 171, 275
AvaII GGWCC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 155
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 2 cut(s) 171, 275
BmgT120I GGNCC 1 cut(s) 235
BsaJI CCNNGG 2 cut(s) 170, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 170, 231
BseLI CCNNNNNNNGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 2 cut(s) 54, 165
BsiHKCI CYCGRG 2 cut(s) 171, 275
BslFI GGGAC 2 cut(s) 134, 190
BslI CCNNNNNNNGG 1 cut(s) 172
BsmFI GGGAC 2 cut(s) 134, 190
BsnI GGCC 2 cut(s) 54, 165
BsoBI CYCGRG 2 cut(s) 171, 275
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 1 cut(s) 228
BspANI GGCC 2 cut(s) 54, 165
BssECI CCNNGG 2 cut(s) 170, 231
BssT1I CCWWGG 1 cut(s) 231
Bst6I CTCTTC 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 112
BstXI CCANNNNNNTGG 1 cut(s) 232
BsuRI GGCC 2 cut(s) 54, 165
BtgI CCRYGG 1 cut(s) 231
Cfr13I GGNCC 1 cut(s) 235
CviAII CATG 2 cut(s) 155, 232
CviJI RGCY 5 cut(s) 54, 165, 191, 213, 280
CviKI_1 RGCY 5 cut(s) 54, 165, 191, 213, 280
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 235
Eco88I CYCGRG 2 cut(s) 171, 275
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 2 cut(s) 158, 235
FaiI YATR 4 cut(s) 19, 108, 156, 233
FaqI GGGAC 2 cut(s) 134, 190
FatI CATG 2 cut(s) 154, 231
Fnu4HI GCNGC 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 101
GluI GCNGC 1 cut(s) 101
HaeIII GGCC 2 cut(s) 54, 165
Hin1II CATG 2 cut(s) 158, 235
HphI GGTGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 17, 100
Hsp92II CATG 2 cut(s) 158, 235
LpnPI CCDG 1 cut(s) 294
Lsp1109I GCAGC 1 cut(s) 112
MboII GAAGA 3 cut(s) 14, 209, 286
MnlI CCTC 9 cut(s) 44, 87, 129, 152, 162, 176, 180, 210, 248
MseI TTAA 1 cut(s) 307
MslI CAYNNNNRTG 2 cut(s) 159, 230
MspA1I CMGCKG 1 cut(s) 191
NcoI CCATGG 1 cut(s) 231
NlaIII CATG 2 cut(s) 158, 235
PaeR7I CTCGAG 1 cut(s) 275
PkrI GCNGC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 235
PspXI VCTCGAGB 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 191
RseI CAYNNNNRTG 2 cut(s) 159, 230
SaqAI TTAA 1 cut(s) 307
SatI GCNGC 1 cut(s) 101
Sau96I GGNCC 1 cut(s) 235
SetI ASST 4 cut(s) 79, 134, 193, 240
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 159, 230
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SsiI CCGC 1 cut(s) 228
StyI CCWWGG 1 cut(s) 231
TaqI TCGA 6 cut(s) 32, 144, 159, 255, 276, 297
Tru1I TTAA 1 cut(s) 307
Tru9I TTAA 1 cut(s) 307
TseI GCWGC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.